LOC110508442 (LOC106600049)


Basic Information

Item Value
gene id LOC110508442
gene name LOC106600049
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7988636 ~ 7992523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588959.2
AGGAAAGTGCAATTTCATCTTAGTGAAATGATTTATTAAAGACTACAATAACCAAGATGCTAAGCGTAAATTTTCAACATAGAGCTGTCAAACAACACAAACGCCATCTTGACAGCAGCCTTAAAATGGCAGAAAAATGCCAGGGAGAAACCGAACTACGGACAGggtttattttcttattttgaaAAGACTGTCCCTTCCCTGTTTTTCTAAAAACGTAGCTAGGGAGTTGATGGCCAGTGAGAGAGACGAAATACGTTAAAATGGATATCACGACGGCGGTTTTCAACGCGGCCAGAGATGGTAAGCTGAAACTTATCCAGAAGTTGCTGAGCAACAAAAGTCCGGAGGAGTTGGAAGCTCTCGCCGAGGAGAAAACACAGGGAGGCACACCTCTCCTCATTGCTTCTCGACACGGACACTTAGAGGTTGTGGACTATTTGCTTGAACATTGCAAAGCTAACGTGGAACTAGGAGGCTCGGTAAACTTTGACGGTGAGACGATTGAAGGGGCTCCCCCGCTATGGGCGGCTTCGGCGGCTGGTCACCTCCCTGTCGTCCGCACACTCCTCAAACACGGTGCCTCTGTCAACAACACTACGCTGACCAACTCAACGCCCTTACGCGCTGCCTGCTTCGATGGTCACCTGGAGATTGTCCGTTACCTGGTGGAGCACCGAGCCGATATGGAGGTAGCCAACCGCCACGGCCATACCTGCCTGATGATCTCCTGCTACAAGGGCCACAAAGAGATAGCAAAGTTCCTCCTGGAGCGTGGTGCCGATGTCAACCGTAAGAGTGTGAAAGGCAACACCGCTCTCCACGACTGCGCTGAGTCCGGTAGCCTGGACATCATGAAGATGCTGCTGAAATGTAATGCCCGCATGGAGAGGGATGGATACGGCATGACCCCTCTTCTAGCTGCCAGCGTCACGGGGCACACCAACATCGTGGAGTACCTCGCCCACCAGCCCCGCTCTTCACGAGAAGAACGCATTGATGCACTCGAACTCCTGGGGGCCACCTTTGTAGATAAGAAGAGAGACCTCCTGGGGTCCATGAGATACTGGAGGAGAGCCATGGAGCTGAGACAACCAGCTGACAAGGTGGGACTCCTGGCCAAGCCCCCTCCGGGTCCCCCTGTCCCTGCCTATGACTGTGCCCGAGAGGTGAGCACAGCCGAGGAGCTGGAGGCTCTGATCACAGACCCTGACGAGATGCGGATGCAGGCCCTGCTGGTCCGTGAGAGAATCCTGGGGCCCTCGCACCCCGACACCTCCTACTATATCCGCTACAGAGGGGCCGTCTACGCCGACTCTGGTAACTTTGAACGCTGCATCAGCCTGTGGAAGTACGCCCTGGACATGCAGCAGAGTAACCTGGACCCCCTCAGCCCCATGACGGCCAGCAGTTTCCTGTCCTTCGCTGAGCTCTTCTCCTTCGTGCTGCAGGACCGGGCCAAAGGTACCCTGGCCACTCGCGTCACCTTTCACGACCTGATGGGGGTGTTGGGGAAGAGtgtgagggaggtggagagggcggTGGCCCAGAGGGACAGCCCCCCCGAAGCCCCCCAGTTCACTAAAGCCCTGTCTATCATCCTCCACCTGGTGTTCCTGCTGGAGAAGCTGGAGTGCACCACGGAGCAGGAGCACCAGAAGAAGCAGACGGTGTACCGCCTCCTGAAGTTGAACCCGCGGGCACGGAGTGGCTTCACCCCCCTGCATATGTCTGTGGACAAGGATACCACGTCGGTGGGCCGCTACCCTGTGGGTCGCTTCCCCTCTCAGACCGTGGCCTCGCTGCTGCTGGAGTGCGGAGCGGACGTGGACTCCCGGGACTGCGACAACAACACGCCCCTGCACGTCGCTGCTAGCAACGGTTGCCCGGAGATCATGGCGCTGCTGGTGAGGGCAGGGGCACACTTCGATGCCACCAATGCACAGAGGAAAACTGCGTACGAGCTGCTGGAGGATCAGAGCAGTGGACACCCGGCCCTCTACCCCCTCAACTACGTCACTCTGCAGTGCCTGGCAGCGCGCACCATTGAGAGGCACAGACTGCCCTACAAGGGCCTCATCTCAGAGGAGATGGAGACCTTCATTGAGCTGCACTGACACACCCCTCCCCCTTAAAATCCCCACCCTGTCCCCACACTCTCCCTCAGACCCCTCTAAACCACCCAACAATGACCCCCTTCACCCCACCTCACCCATGTCCCACCCGACCCCCTCATTGTCACCATACCCCAGCCCACCCCCTTTCCCCATGGCCTTTCCCCTCTCAGTACCCCTTCTAACACCAGACTATTAGCTCTGTCTCAGACCAAATCGCAGCAATAATCCTCCTGGCTTCTAAACGTTACACTAACAACAGACTGGGAGCATTTTAGCTGTGGCTAGATGCCTCCGGTCAGTGCTCTCTCTTTAGGTTatgggcaattccacggtaacagagtgatgctgagattcagatttttcacttttaaaatgtatgtcaaacaaaaaactatGATAGCAAAGTTAAACAATAACGCAATTGCACAAGGAATagttttaacaatttccacagaacaTTTTACAAGAACATATTCACTCTTAAGAACAGTGAAGAATCTTGAGTCTCAGCATTGCTCTTGTATCGTGGATTTGCCCTTATCTGTTATTAAGACATGGACACTTTCTAAGTGCTAGGTTGCTATTTGTTTGCAGGTGGGGAAAAAAATACCTTTTGGACTTGATTTTAGGATTTGATGCTTTCTTTTTCTTCTCCTGTTTCTCTTGATAAGCAAGGAAGACTCCTAACAGAAAGGAAAGAATGGCAGTGCCTATATATCTATTGGGTGGTGGCTTGTTTTAAGGTGGGAATGGAAGCTGTATTACTTGATAGTACATGATCAAATATTGACAGTTAACTGCATGAGAGGCTTAAGAGTGAATAGGATAGCTTGTTTGTTAAATCGGTCTTGTTTTGCAAGGTTATCCAGAAGCATCCTTTGAACAAACAAAGTACACATTGTATGCTTGGCTGCCTGGTATCAatggattttattttttttataattcaTTTAGCGTTATTTAATCCTCCGCCCCATACTTTGACATTTTAAGGAGTGTTTGAAAACCCATTTGTGCCAAAACTCAGCCTTATATCGTTCCTCTACACGTGTAATCTTGCAGGTTAGCCTGAACCTACTGAACTAGCTTACTACAAATGGAGCAACTCACAACTGTAGAGCGCAGACTAGCATGGGAACTCTCATAAGGATACAGTTTGTTTTAGCCTAGCCTACATCTCTTAGTTTACTCTGTATTTttttagactgtgtgtgtgttttacaacCTGGTCAATGTCGTGAAGTTTCCCTCTGGACAACTTGGACAAAGTGGGAAAGGAAAGATGGAGATTTCTCTTCATCTCCTCTTGAGTGAAAGTTTATGTTGATCCCAGTATCAGATCATCTATTCTAGTCTATCTACAGTCCATGCAGAACAATTGGAATCTATGCAGTCACTCAGTGTGACAATATCAAAACCCAGGGGTGACCCGATTTAAGCACAGATGCAGGTGATAAGGATGTGGAACAAATCGCACactgcattttattttatttttttaatttttttttacaatttcagTTTTGTGTTTTCATACATGCTCTCTTTTAtttttttctgtttgtctgtccctatgtaacaaacaaaaaaacacctgATTGAATGCACTTTGAAAAACCTCCGTGAATCCTAAAGTGTCCCTGTACAACATCCAGGCTATGGACTGTCGCAGCCTCTCTCTCAACGGATTGATTAATTTAACTGATGATGATAACTTCAGAACAAAACTGTGTTGAGATACTTGAATAAAATTCAGTGTCCCTGCAGCAAG

Function

NR:

description
protein fem-1 homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588959.2 True 3888 mRNA 0.49 1 7988636 7992523

Neighbor

gene id symbol gene type direction distance location
LOC110508438 LOC106600038 coding downstream 8418 7883892 ~ 7980218 (-)
LOC110508437 LOC106600038 coding downstream 78881 7906401 ~ 7909755 (-)
LOC110508436 LOC106600442 coding downstream 110270 7862322 ~ 7878366 (-)
LOC110508434 LOC106600027 coding downstream 151369 7767544 ~ 7837267 (-)
LOC110508432 LOC106600026 coding downstream 282764 7688645 ~ 7705872 (-)
LOC110508443 LOC106600051 coding upstream 3870 7993411 ~ 8044009 (-)
LOC110508444 LOC106600443 coding upstream 69517 8062040 ~ 8066701 (-)
LOC110508446 LOC106600062 coding upstream 268633 8261156 ~ 8304991 (-)
LOC110509207 LOC106600069 coding upstream 333372 8324762 ~ 8335344 (-)
LOC110508449 NA coding upstream 365305 8357821 ~ 8383590 (-)
G2100940 NA non-coding downstream 52674 7924813 ~ 7935962 (-)
G2100851 NA non-coding downstream 131174 7857231 ~ 7857462 (-)
G2100844 LOC106569516 non-coding downstream 131695 7853544 ~ 7856941 (-)
G2100832 NA non-coding downstream 150243 7838136 ~ 7838393 (-)
G2100822 NA non-coding downstream 158071 7830281 ~ 7830565 (-)
G2101052 NA non-coding upstream 16545 8009068 ~ 8028624 (-)
G2101155 NA non-coding upstream 63916 8056439 ~ 8056817 (-)
G2101164 NA non-coding upstream 76014 8068537 ~ 8068752 (-)
G2101173 NA non-coding upstream 86000 8078523 ~ 8078732 (-)
G2101184 NA non-coding upstream 101306 8093829 ~ 8094465 (-)
G2100707 NA other downstream 394821 7593294 ~ 7593815 (-)
G2100109 NA other downstream 782148 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1549540 6426170 ~ 6439096 (-)
G2098997 NA other downstream 1750023 6238169 ~ 6238613 (-)
G2101243 NA other upstream 165696 8158219 ~ 8158518 (-)
G2101464 NA other upstream 245621 8238144 ~ 8239853 (-)
LOC118936616 LOC106600091 other upstream 489209 8480324 ~ 8522153 (-)
LOC110508274 LOC106600446 other upstream 984329 8976699 ~ 8978156 (-)

Expression


Co-expression Network