LOC110508456 (LOC106600142)


Basic Information

Item Value
gene id LOC110508456
gene name LOC106600142
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8993922 ~ 8995746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588982.2
ATTGACATGTATCAGAATcatcaacaaacacacactcacatgcacacacctgTTTGTAGGGGTATATAGGATCAGTCCGTAGGCGTGTTTGGTGTATCTTCTCTAGTCTACCATCACCATGGCTCCCACATACCTGGAGACAATCCTGCTTCTCTGCTGTGTTGGGACCATGTTCAGTTCAACCTCAGCTGCATACGGTCCTAGGAGACTTTACTGTTGTGTGGAGTACCAGGAGAAGCCTATACCCGACCAGCAGATAAAAGGCTACAAactacagcgctccaaggaggtGTGCAACATCGACGCTATCATCTTCTACACCTCGAAGAACAAAAAGGTGTGCGCCACAGTTAAGGACGAATGGGTGAGGAAGGCTCTGGCTCGTCTCAGCTCCGAACTGAAGAAGATGTCTAGCAGCAAGACTGTGACGGgaaccccccccaccaccccgaTCTGAAAGGAACATCCAGCCACATCACCAGTAATCCCAAACGTTCAGTAATGTGGTGAAATGATGCAGCTATTATTTGAAATATAATGCATTGCATTAGCTCTGATGTTTGCTGTTGTTGATGACTGTAGTACTCGATTCATGCTTAAGCTTACAGGGGtcctctgaatccacaatataaGCTAGTAAAGTCAACGGCTTCAATTAATcatatttttttctacatttaaATGTTGAACGTTTGTTTCTTTTAAGGTCGGCAGAAATAAAAAATTATTTGAGATAATGCCA

Function

NR:

description
C-C motif chemokine 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588982.2 True 742 mRNA 0.44 4 8993922 8995746

Neighbor

gene id symbol gene type direction distance location
LOC110508274 LOC106600446 coding downstream 15766 8976699 ~ 8978156 (-)
epha4b LOC106600124 coding downstream 83421 8781818 ~ 8910501 (-)
dnah9l LOC102781332 coding downstream 395655 8522163 ~ 8598267 (-)
LOC118936616 LOC106600091 coding downstream 471769 8480324 ~ 8522153 (-)
LOC110509208 LOC106600076 coding downstream 570936 8408883 ~ 8422986 (-)
LOC110508458 LOC105022262 coding upstream 111428 9107174 ~ 9123547 (-)
LOC110508459 LOC106599937 coding upstream 158971 9154717 ~ 9180242 (-)
LOC110508462 lect1 coding upstream 260200 9255946 ~ 9263669 (-)
LOC110508463 LOC106600184 coding upstream 269558 9265304 ~ 9269449 (-)
trnal-caa-108 NA coding upstream 344032 9339778 ~ 9339890 (-)
G2102083 LOC106600129 non-coding downstream 77 8992929 ~ 8993845 (-)
G2102077 NA non-coding downstream 12700 8980992 ~ 8981222 (-)
G2102043 NA non-coding downstream 23512 8965210 ~ 8970410 (-)
G2102047 NA non-coding downstream 57395 8936294 ~ 8936527 (-)
G2102045 NA non-coding downstream 58100 8935323 ~ 8935822 (-)
G2102087 NA non-coding upstream 5497 9001243 ~ 9001520 (-)
G2102088 NA non-coding upstream 5831 9001577 ~ 9001847 (-)
G2102112 NA non-coding upstream 59273 9055019 ~ 9056366 (-)
G2102729 NA non-coding upstream 134043 9129789 ~ 9143732 (-)
G2102736 NA non-coding upstream 154733 9150479 ~ 9152400 (-)
G2101464 NA other downstream 754069 8238144 ~ 8239853 (-)
G2101243 NA other downstream 835404 8158219 ~ 8158518 (-)
LOC110508443 LOC106600051 other downstream 995057 7993411 ~ 8044009 (-)
G2102731 sugt1 other upstream 235948 9231694 ~ 9255166 (-)
G2102910 nop9 other upstream 572220 9567966 ~ 9569051 (-)
G2103015 NA other upstream 780873 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 800748 9739138 ~ 9883971 (-)

Expression


Co-expression Network