LOC110508462 (lect1)


Basic Information

Item Value
gene id LOC110508462
gene name lect1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9255946 ~ 9263669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966816.1
agagcgagagagagagagagagagagagagagacagagagagaggattagtGGACACCTTTGCTCAGGCTCTCAGACCCACTCGCAGCCATGGCCGAGAGTTCAGATAAAGTGCCCATCGCTTTAGCGGGACCCGAGGACCTGCAACAGTTTATGCCACCTGCATACACTGCGGTGGCAGTTAAACCGGTGGCCACCGGCCGCCTGCTGAAGTCCGGGATTGTGGTTTTGATCGCCGGGGCAATACTGCTGCTGTTCGGGGCTATCGGAGCTTTTTACTTCTGGAATATTAACAACAAACATatcTACAACGTCCACTACAGCATGAGTATTAATGGTAAGGTGGAGGAGGGCTCTATGGAGATTGATGCTACCAACAACATGGAGAGGTTCCGTACtgggagtggaaaggaggaggcAGTGGAGGTCCACGACTTCCAGATTGGTATAACTGGTATCCGTTTTGCTGGAGGAGAGAAGTGTTACATTAAGACCCAGGTCAAAGCTCATCTGCCTGACGTGGAAACACTCAACAAAGACTCTCTTCTATTCGACCTGgaggATGAGGTGATGCCTGCTAAGTTTGAGGAGGACTCTCTGATCTGGGTGGCGGCTGACATGCCCCTCTCTGACCCCACCTTCCTCAGCTCCAAGATCCGCGATTTGTGTGGAGACCTGCCAATCTTCTGGCTCCGCCCTACCTACCCCAACGGtgggcagaggaagaggagggcagCCCCTCGGCAGCGCCGCCAGGCACCGGgggcagaggaggaagtggacccGGAAGCAGAATTTAACCCTGAGAACCCCTATCATCGTGGTCTGGAGGGCGAGGAGGGCACAATGACCTTTGACCCCATGCTGGACCACCAGGGCGTGTGCTGTACGGAGTGCCGGAGGAGCCACACCCAGTGCCAGAGGATCTGTGAGCCCCTGGGGGGGTTCCAACCCTGGCCCTACCACTACCGCGGGTGCAGGGTGGCCTGCAGAGTCATCATGCCCTGCCGCTGGTGGGTGGGTCGCATCCTGGGCATCCTCTAAACACCCCCTGCCTAGACCTGGAGTGGTAGAATCCAGAGAAAGAcaggtggtggagagagagagagagaaagaggaaagaaaaacagagagtagtggggggggggggagataggTCAACCAAATTGAGTACTTAGCTTGGCTAGGTATAGTGCAGTTCACTTAAGATTTGGGCAAGGGAGGAAGAGCGAGAcaaagattattattatttttttttaaaggggagTGAGCAAACAATCAATCAAGGATATTCAGTTTTCAACCATAACAGAGAAATATGTATGCTACAATAACATAAGTTGTATATCATTATTCATACCATACTCTTTAAGAGTACTACATACCCTGTGGTGACATCAACCTGTCTGATCTTGTCACCTGAAACCAAATATTAAAATAATTTACATATTTTCTGTCAATAGTTTTATCTTATTAGTGATTGACACGACAGTTAGTGATGTGTAAACTTACCTTTCAGTTTTTCCTTTGCCTTTTTGATGGAAACAAATGTCAGAAATAACAAGTCTTCTGTAGGCAGAAGTTAAAGTATACGAGTTGGGACGAGACTgtcagctgtgtgtgtctgtagctaTTCATCATGCTAGTGAGAAGTGTTTCTGTCCTCCAGACCGTTGTTATTCATTTCCCCAACAGTTTCTCCAGAAGTAGAGCCTACCAACATCTACTGTACACCATCTGGCATTCTCCATCAGCATTAAATAACTATTTCAAAGTGCCAATTCAatgaataaaatgttattttaagtAACCATA

Function

NR:

description
leukocyte cell-derived chemotaxin 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966816.1 True 1814 mRNA 0.49 7 9255946 9263669

Neighbor

gene id symbol gene type direction distance location
LOC110508459 LOC106599937 coding downstream 75704 9154717 ~ 9180242 (-)
LOC110508458 LOC105022262 coding downstream 132399 9107174 ~ 9123547 (-)
LOC110508456 LOC106600142 coding downstream 260200 8993922 ~ 8995746 (-)
LOC110508274 LOC106600446 coding downstream 277790 8976699 ~ 8978156 (-)
epha4b LOC106600124 coding downstream 345445 8781818 ~ 8910501 (-)
LOC110508463 LOC106600184 coding upstream 1635 9265304 ~ 9269449 (-)
trnal-caa-108 NA coding upstream 76109 9339778 ~ 9339890 (-)
LOC110508465 LOC106600202 coding upstream 110234 9373903 ~ 9392396 (-)
trnae-cuc-376 NA coding upstream 129612 9393281 ~ 9393352 (-)
trnae-cuc-377 NA coding upstream 130253 9393922 ~ 9393993 (-)
G2102731 sugt1 non-coding downstream 780 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 103546 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 112214 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 199580 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 254099 9001577 ~ 9001847 (-)
si:ch73-71c20.5 LOC103478929 non-coding upstream 184070 9447716 ~ 9453799 (-)
G2102863 LOC106600212 non-coding upstream 208960 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 278455 9542124 ~ 9547321 (-)
LOC110508470 LOC106600228 non-coding upstream 315515 9579184 ~ 9599623 (-)
G2102992 NA non-coding upstream 458902 9722571 ~ 9727884 (-)
LOC118936616 LOC106600091 other downstream 773533 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1016093 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 304297 9567966 ~ 9569051 (-)
G2103015 NA other upstream 512950 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 532825 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 740557 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 849759 10113428 ~ 10115397 (-)

Expression


Co-expression Network