LOC110508463 (LOC106600184)


Basic Information

Item Value
gene id LOC110508463
gene name LOC106600184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9265304 ~ 9269449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588994.2
CAGGCTTAGAGGTCTTTTAGAAGTCCCCTTTTCGTTTTCAACGCGCGGATTGGTTACAGTGCAGCTCATTTGCATGCACCGCGGTATAAACCCTCCCGCCACTGCAGCCCTCTCGCGCTGAGAGAGCACACCTCGGAGCGAGCACCGCGGAGAGAGTTAGAGCTTTATTACCTCGTCGTCCTAAAACGAACACTGTCGTACCCAACGAGACTTGGAAAGTGCTTTTGTTTGAATAAATAGTTGAGCCAAGCTCCAGACAGTTTTTAGTGGATTTTTGTTGTGTTATTTAAATTGGCAGGATGGGTATGAGAGGGTGGAATTGGTGGGTGCTGGTGTGCACCTCACTGGCTGTCCTGCCCGCTCTCACGGAGGGAAAGACGGTGAAGTATGAGACATTTGAGGAGGACGCCCCGACGACTGTCATCGGAAACTTGGCCAAGGACATTTCAATCAGCCCCTCCTCGGGCTCCAAGACAAATTTCAGGATGATGAAGCAGTTCAACTCGTCTTTTATCCGTTTGAGGGAGAGCGACGGCCAGCTGACTATCGGAGAgagaattgacagagagagaatttGCAAACACACCCTTCACTGCCTCATCGCATTTGATGTGGTCAGCTTCTCCAAAGAGCAGTTCAAACTCATCCACGTCGAGGTGGAGGTCAAGGACATCAACGACAATTCCCCCGAGTTCCCCCGGAAAGAGTCGAGTCTGGAGATCTCCGAAAACACAGCTGTGGGCACGCGGATCCCGTTAGACTTCGCTGTGGATGAGGACGTGGGTTTGAATTACATCCAGAGCTACCAGATATCCGTTAACAGTCACTTCACCATAGATGTGCTCAGCAGAGCCGACGGGGTTAAATATGCGGAGCTTGTGCTCATGAAGGAGCTGGACCGTGAGACACAGGCTTCCTATGCGCTCGAGCTGGTTGCTATGGATGGTGGCAACCCGTCCCGCACTGGAACGACTCGCATCAACGTCAAGGTGAAAGACTACAATGACAACAGCCCGGTGTTCGACAGGAACAATTTCTCAGTCGACCTCCCTGAGGACGCACCGGTAGGGTTTCTCTTACTGGACCTGAACGCAGAAGACCCGGATGAGGGGCTGAATGGGGAGGTGGTGTATGGGTTTGGTAACCAGGTGCCATCAGAGATTCGACAACTTTTCAGAGTGGACCGCAAAACGGGACGCCTCACCCTTGAGAGCCCCATTGACTTTGAAGCAAAAAAAACGTACGAATTCGACGTCCAGGCGACTGACCTGGGTCCAAACCCGAGCCCGGCTATCTGTAAGATAGTGGTGCAGGTGCAGGACGTTAACGACAACGCGCCAGAGATCTCCATCACGCCTATGACCTCCATCACCGCGGGAATCGCCTATATCACGGAGTCTGCGGCACGCGAGAGTTTTGTTGCTCTAGTCAGCACCTCGGACAGGGACTCTGGTGCTAACGGACAGGTGCACTGCACGCTCTACGGCCATGACCACTTCAGGTTGCAGCAGGCGTACGAGGACAGCTTCATGATCGTGAGCACAAGCCCGTTGGACCGGGAACAAATCCCTGAGTATAATCTAACAGTGGTGGCAGAGGACTTGGGTTCCCCACCATTCCGGACCATCACCCAGTACACCATCCGGTTAATGGACgagaatgacaatgcccctgtgttCAGTAAGCCAGTGTATGAAGTGGCTGTGGTGGAGAATAACGCACCGGGTGCTTACATCACCACGGTGGTCGCCAGGGACATGGACTTGGGCCACAACAGTAAGGTGAGCTACAAGCTCGCTGACGCCTATGTCATGGGCTCTCCAGTGTCTGCTTTTGTCTCACTGGACCCCGCGAGTGGCTCCCTTTATGCACTCAGGAGCTTCAACTATGAAGTCATGAAACAGCTCGAGCTCCGCATCACAGCCAGCGACGGTGGGTCCCCGCCCCTCACCGGAATCACGACCGTTAACATTAGGATAGTGGACCAAAACGACAACGCACCTGTCATCAACCAGCCCGTGCTCAATAATGGGTCCGCGGAGGTTCTGCTGCCCCGGGATGCGCCCTCAGGCTACGTCATCACCCGGGTGGAGGCGCAAGATGCTGATGAGGGCTTGAATGCAGAGCTGTCCTACAGACTTGCCTTTGGAGAAGCATCCGTGTTCTCCGTTAACAAAGCCACCGGAGAGGTCTACCTCAACCGCGTGCTCAGTCACGGCGTGGACGAGACCCTGCGCGTGACCGTCACGGTGAGTGACAATGGGAGACCTGCGCTCACCACCGCCGCCACGCTTCACTTCCTCATCATTGCGGGCGCCCCTCCGAGCGACAGGACCGTGTACCGGGCAGGCAGCAGGGAGGCAGGGGAGCACACACAGTGGGACCTGTCAGTGGTGATTATCATCGTCCTCGCGGGGAGCTGCACGCTCCTGCTGTTAGCCATCATCCTCATCGCCACCACCTGCAACCGGCGGAAACGGGACAAGACTGGAGATGACACCGACTCGTACGGGGAGAAGGAGACTCTGGAAAGAGGCAAAAACAACGGCGACAACCCTCTGCTGCCGCTCCACGGAGTCGTGGGAGGGTTTGAAGCCCACACTTTCTCGAGCCAGCCTGGTTTTGCCGGGGAACACACTGGTAGCAGTGACCTGTGCTCCGCCTCAGAAGATGGGAGCGAGGCCCCGTGTGTCTACGAACCGGACAGCAAACCCAAGGGCTACTCCACTCTGCCCGGCTACGGAAACGGCTACAATAACGGTAAAGAAGTGGTCAGACCAATCACCATCTGGAAGGGCAACTCCTACACTACCATCTCCGCAAGAGACCCCGCATTCAGCGGGAAGGACAGCGGGAAAGGCGACAGTGACTTTAACGACAGCGATAGTGACATCAGTGGCACCGACCTGAAGAAGGAGGGAGCACCGGTACCCCCCATGGGTGGCCAGAGTGgtctatGGGCGTGTACCAGCGAGTGTAAGATTCTGGGTCATTCTGACCGCTGCTGGAGCCCTTCCACTGTCCACGCTAACACCGGTCCCTCGCCCGTCCCCACCCCCACCGGCCAGACTCTCTCCTCCTTCAACAGTCTCTCCAAGACGGCCTCGCTGCCCCGAGACTCGCTCCGGCGGGACAATTATTACCAGGCTCACATCCCCAAAACAACCGGCCTGCAGAGTGTGTATGAGAAGGTTCTGCATAGAGAATATGACTATGTCCTGGTCACTCCTCCCATACCCATGAGAGTTCAGGAGATTAGTGAAATCACTAGCCCAGTCTACGGTCCGACCACAACACGGTGTCCCAGCAATGAAGTCTAGAGAAGAACCTACATAACAGCATTCAAAAATGTGTTTCATTTCGTTTATAAAACCATGACAATGAGAATTACATGTTGCTTACAAATGTAGGAGATTATTTGTCATGCAAATTAGTTTGTATATCCTAAAGAATATTTGTGTATTTTGAATTTTTAAGTGTTTCAATGTAAAAGTCACATTTGGACTCTATCCAATCACTGTTAAGACTTTGTTGGACATATACTGTGTAACTTATGCAAGGATTTGTACATAAAGagagtttattttttttataaaaaatcaTAATTAAACACCGACGATGTGTACATATGAATTGTAATTATACTGATTCTAAGGCATGCCTACTATTCAAATGGCCCAGAAACCACGGTTTGATGCCGGAGACCCAATGTATCAAGTTGATAACTAtgtatgaatttatttaaatgcaATGATGTAATAATTGTTTCGATTTTCTATCACAATATTCGAAAGAAAATAAACGTAGAAATACCGTTTTGAAACCTTAA

Function

NR:

description
protocadherin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588994.2 True 3829 mRNA 0.52 4 9265304 9269449

Neighbor

gene id symbol gene type direction distance location
LOC110508462 lect1 coding downstream 1635 9255946 ~ 9263669 (-)
LOC110508459 LOC106599937 coding downstream 85062 9154717 ~ 9180242 (-)
LOC110508458 LOC105022262 coding downstream 141757 9107174 ~ 9123547 (-)
LOC110508456 LOC106600142 coding downstream 269558 8993922 ~ 8995746 (-)
LOC110508274 LOC106600446 coding downstream 287148 8976699 ~ 8978156 (-)
trnal-caa-108 NA coding upstream 70329 9339778 ~ 9339890 (-)
LOC110508465 LOC106600202 coding upstream 104454 9373903 ~ 9392396 (-)
trnae-cuc-376 NA coding upstream 123832 9393281 ~ 9393352 (-)
trnae-cuc-377 NA coding upstream 124473 9393922 ~ 9393993 (-)
trnae-cuc-378 NA coding upstream 125114 9394563 ~ 9394634 (-)
G2102731 sugt1 non-coding downstream 10138 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 112904 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 121572 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 208938 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 263457 9001577 ~ 9001847 (-)
si:ch73-71c20.5 LOC103478929 non-coding upstream 178290 9447716 ~ 9453799 (-)
G2102863 LOC106600212 non-coding upstream 203180 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 272675 9542124 ~ 9547321 (-)
LOC110508470 LOC106600228 non-coding upstream 309735 9579184 ~ 9599623 (-)
G2102992 NA non-coding upstream 453122 9722571 ~ 9727884 (-)
LOC118936616 LOC106600091 other downstream 782891 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1025451 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 298517 9567966 ~ 9569051 (-)
G2103015 NA other upstream 507170 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 527045 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 734777 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 843979 10113428 ~ 10115397 (-)

Expression


Co-expression Network