LOC110508465 (LOC106600202)


Basic Information

Item Value
gene id LOC110508465
gene name LOC106600202
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9373903 ~ 9392396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966384.1
gacaacaaccaccagagccactgcctgttcaccccgctataatccagaaggcaagAGGCAGTCAGTGTGTGTGCCAACACTCTTTCTGCTGACACTAGACGGCATCAAGACCAGACCAAGGAAGATACTCGGTGAAACACAACGgtttgCAATGGGGCTATATCTGGTGGTCCTCTGGGTCTGTGCTGTGGTGCTGCATTCCCTTGGGAGAGCAGAGAaagtggatttaacagtaaCTCAAACGACTGAAACAAGTTTCTCTGAGAGCACAGAAGGGTTGACTGCGGGGACAGTTACTACAAGGCTGGATGTGACCCGAAGCCCtgctagacacacacaccagagccTAGAACCTGACCAGAAGCAAGAACTGCCTCCCTTATACCCCTGTCAGGATGACGAGACGGATTACAGTGAAAGAGTGTACCAGAGGGATTCTCATGGTGTTATGCAGCTGGTTCAGAGCGACGACGATGAAGACAGCGAGGACTATGAAGACACTGACATTGACACCAGCATTCACCCCTGCAACCTATCACCCAGTGGACTGGCCTGCTGTCTTATCTACCCAACCAATCAACTCAACTGCTCCTGGAAATTCCATGGTCTCCTTAATGACAGCCAATCCTCTGCCTTTGTCTCTGTGTGTAGGAACAATGAGAGTATCTCCAGTGTGGACTGTGTCTCTGAGGTCATGGGAGGCCAGGGATGGCCTGGCGGTGTGGTTCGAGGCGTGTCTGCTGGCTGCCAGGGGAGTGTGGGTGACGGCGTCACCTCTTTGAGTCTGACTTtcaaagtgtcacgccctggcgtGTGCTGCATCTACACCAATAAAATGGACACCATAGATATTGAAGTACTGCGCCCGCCCCCCAACATCACTGCCTGGGTCAGAGAGGAGGGTCTGCTGGTCCAGTGGGATCTTCCGTCCAACACCACACCCAGATGCTTCCACTACCAGCTCCAGATCAATGACCTGGTGAGGAGCTTCACAGAGGGACTGACATTCACTGAGACCAACCTGGACCACACACAACGGTACGACGTGAAGATGAGGGTGAGGAAGAATAGTAACTGCAGAGGATCTGAACACTGGAGCAGCTGGAGCAACACCATCCcggtGGCCCCGTCTGAATCACACAATCAGCTGAACACTCCGGCGGTTGTTGGCATCACTCTGGGGATACCCATGATCCTCCTGGCTCTGCTGCTGCTGATCAGACTCCAGAGggaccGTCTGGACCGTCTGTTTCCCCCCATCCCTGGTCCCCCACTGAAGATTAAACACCTCTTGGAGAGAGACGACCTACTTCAGGCCCTGCCGTCCAAATGTGTTGAGGAGATCACAGTGGTGGAGGAAGCTGAGGAAACACCTGTCAATATAGCCAGTTAGACAAGATGGCCTGTTTTTAAAGTAGCCTCGTAAATACCAGCGTGAAGCTTGCGGGATCAGATGGCTTTGCTAGGCCGTTTTAAAGCCCCGTCAACATTAGCCCCTAGGCTCTCTGGCCGATCTGTAAGAAGGATCCCCTTAGCCTATCAGAGGTCAAGATGCAGTCATTATCATTTGTTAATACAGTCCTTTCCGATCTACAAGTAGGACAAGGAGAGTGTGTAAGGGCAAGTGtgaccttcctggtcccatccctCAAGTCTGTGAGTCAACACAGGAAGGAGTAATGGATGGATAGTTATTTTATTTCCAAAGCTGCAATCATGGGACACACACAGTATGGATGAATGATGAGTAGTAGACAGGATATAACAGCATTCCTAAAGAAGATGCATTCTCCAGTTAGCTACCAACTTCAAAGAGGGAACATTA

Function

NR:

description
cytokine receptor common subunit gamma-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966384.1 True 1825 mRNA 0.51 12 9373903 9392396

Neighbor

gene id symbol gene type direction distance location
trnal-caa-108 NA coding downstream 34013 9339778 ~ 9339890 (-)
LOC110508463 LOC106600184 coding downstream 104454 9265304 ~ 9269449 (-)
LOC110508462 lect1 coding downstream 110234 9255946 ~ 9263669 (-)
LOC110508459 LOC106599937 coding downstream 193661 9154717 ~ 9180242 (-)
LOC110508458 LOC105022262 coding downstream 250356 9107174 ~ 9123547 (-)
trnae-cuc-376 NA coding upstream 885 9393281 ~ 9393352 (-)
trnae-cuc-377 NA coding upstream 1526 9393922 ~ 9393993 (-)
trnae-cuc-378 NA coding upstream 2167 9394563 ~ 9394634 (-)
casp8 casp8 coding upstream 31017 9423413 ~ 9441034 (-)
si:ch73-71c20.5 LOC103478929 coding upstream 55320 9447716 ~ 9453799 (-)
G2102731 sugt1 non-coding downstream 118737 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 221503 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 230171 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 317537 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 372056 9001577 ~ 9001847 (-)
G2102863 LOC106600212 non-coding upstream 80233 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 149728 9542124 ~ 9547321 (-)
LOC110508470 LOC106600228 non-coding upstream 186788 9579184 ~ 9599623 (-)
G2102992 NA non-coding upstream 330175 9722571 ~ 9727884 (-)
LOC110508274 LOC106600446 other downstream 395804 8976699 ~ 8978156 (-)
LOC118936616 LOC106600091 other downstream 891490 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1134050 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 175570 9567966 ~ 9569051 (-)
G2103015 NA other upstream 384223 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 404098 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 611830 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 721032 10113428 ~ 10115397 (-)

Expression


Co-expression Network