LOC118944864 (LOC106605357)


Basic Information

Item Value
gene id LOC118944864
gene name LOC106605357
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9395496 ~ 9412390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040256.1
ttgtgatgtactgaacaTGACTTGTTGAacaatgcctctgtctcgtcatttaacgTTCAAACAGCCACCTCCCACCACCGAGCCATGCAAAGACCAGATGACCATTGGTCCCATTTCCCAGAGGTCCTCAACATCCTCACTCAGGTCATTGCTGGTTGGAAAACTACACCCCTTCCAGAATCTCGATAGGACAAGGAAGGTGATTGAAAAGAAGACGGATAACATTACTAAAGAGATCGATGTTAAGATAGGAACGGTCTTTGGAAGCAATAGCAGGCCATTCAGCTGAACTACAGAGGGTTGTCAAGCGTGTGGATGAGGCAGGAGGAAGAATTGCTACTGTGGAAACTTCAACTAGATCAATAAATAAAGGCACTTGAGAAACAGGTGCGCGAAATTGCGGAGCACATTGACGGCTTGGATAATCGAGGACGCAGATGCAATATCCGTGTTGTGGGACTCCCGGAAAGGTACTCGTTCAGTATACATGTTCGTGGAATGGATCCCTGGCTACCTACAAATTGATACTAGGGCTGGTCGTGTGAAGCTGGACAGAGCCCATCGCTGTCAAGAACCGATACACGGTCACAACCAGCGCCCACGGCCAGTGGTTAGAAAGTTCCACAACTTCACCCACAAGCAGCGCGTCCTGGATGCGGCCAGACGCATATCGGTTCTGACTGTAGTCAAGGTCCAAGGGTCTCATTCTTCAATGATTATTCCACAGCGGTTGTACTAAGACGCGTGTCGTTTGATGAGGTGAAGGCTCGACTCAAGATAATGAATATGGACTACGCACTGATGTACCCGGCCACATTGAAGATTATGGTCAACGGATCGCCTAAAAAAACTTTACACACCAGAAGAGGTTGCTGCGTTTATTGACTCTCTCAGAGAAAGCATGTACACCATCTTAAAAAGTATGGAGAACTGACGGCAAACATACTGAAGAGAGAACATGCCCCTAAGACTCCCTCCACCATCAAGCAGAGCACATTACTGAAGACGGTGTCTCTCAAATCCATCGACAAAGCTGTGATGAAGTATGTGGTCCAAGGGCTCCAACCATTTTCTGTTGTAGAACAAGAACCGATTAGAGAGTTTGTCCAGGATCTACAGCTTAAccagTTCAATCCAGCTGAACTTGCCTTCCTCACAGTGTATGCTGCCACCATGAGCCCAGTCGCAAAGGCCATCAACATCCTGCAGGCTGAAACCAATGTCCAGATGGGCTGGCTACTTCCAACTATCAACCTGCTGATCACAAAACTTGACTGAATCAAGTTGTCCATGAAGTACTGTAAGCCTCTGGTGGATGTGCTACAACTGAGACTGAAGAAGCGCTTCAGCCACATGTTTCACGACCCTGAGCTGATAGCCGCTGCAATCCTTCTCCCCAAATTCTAAACAACGTAGACAAAGCATGACGCCACCATCAGAATGGGAATGGACGACATCAAGGACCACCTGGAAGAACCCTTGCAGCAGCTAGGTGATGGCACCAGTTCATCAGATGAGGACTTCTTCTCTGCATTGAAAACGTCTCAAGCACAGGAAAGCTCCAATCAGCTGGACAGATTCCTGGCCTGTTCAGCTGATCGTATGGAGTTGCTCAAGTCCTTCTCGGcagtctgtaacctgtctctGAGGTTAAACACACCCGTACCTGCATCAGCTTCCTGTGGAAGGCTGTTCAGCATTGCAGGACTTGTTTTCAGCCCCAGGAGAGCAAGGCTGTATTCCAGAAACTTTGAAAACCAGCTTTCACTGAAGATTAACCATAAATTCTTCAACTTCAAGTAATGACAGCTTAACGCTTGCAAGGCCAAGGACAAGGATGCCTTATGCATTTTTGTTAACTGTGAAATTTCAACATAAATTATAGGTGTCCTTGTTACAAAGTTATGACCAGACACTGATTTCTAATACAGTTCCATCAGTGGTGATGTCCTCATATTCCTACAGTGATGTTTTGTGTACTTTTGATGAGCTGTTTTTTCTAAAGCAATGTAACTGATTGTAAGTACTGATTGTAAGTACTGGCTATATTCCTTTTCTATTAAGGCATAATTCTGTTTTGTCTGTAAGAGATGTATTTTGAAGTGTTGCCTATATTTGACAatccactttttatttttttttatctgagctCTTACTGCGTCCTTAAGACTTAACTTTCAGAAAAACTCAAACTAAATAAAAGGTCTGGTTGTTTTGCTTTTTAGATTTACGGCTCTTACGTTTCATACTTTTGATACATCCACCactgcttaatataaggaattgaaTGTATAACTTTTACTTTgtactttcactcaagtatgataattgtTACTTTTTACACtactgtacttaagtacatttaaaaccagatacttttttacttatactcaagtagtatttgacTTGGTACCTTggtcacttttacttgagtaattttctattaaggtatctttacgtTTTACTCAAGACAATTGAGTACCTTTTCCACCCCTGCCAgcaacaaggcacacttgttggGTCAGCACAAGATGCAGTTTAGCATTGGCTTTAGAGGAAGCAGACCTGTGCTGggttaaaaattttaaaaaaaaatgttttattcaaaATGCAGATCAACAATTTACATTCTTACAACATACAAAACAGAACGCAGGTATTAACGAGAAAATactgaaa
>TU2404560
ACGGTCACAACCAGCGCCCACGGCCAGTGGTTAGAAAGTTCCACAACTTCACCCACAAGCAGCGCGTCCTGGATGCGGCCAGACGCATATCGGTTCTGACTGTAGTCAAGGTCCAAGGGTCTCATTCTTCAATGATTATTCCACAGCGGTTGTACTAAGACGCGTGTCGTTTGATGAGGTGAAGGCTCGACTCAAGATAATGAATATGGACTACGCACTGATGTACCCGGCCACATTGAAGATTATGGTCAACGGATCGCCTAAAAAAACTTTACACACCAGAAGAGGTTGCTGCGTTTATTGACTCTCTCAGAGAAAGCATGTACACCATCTTAAAAAGTATGGAGAACTGACGGCAAACATACTGAAGAGAGAACATGCCCCTAAGACTCCCTCCACCATCAAGCAGAGCACATTACTGAAGACGGTGTCTCTCAAATCCATCGACAAAGCTGTGATGAAGTATGTGGTCCAAGGGCTCCAACCATTTTCTGTTGTAGAACAAGAACCGATTAGAGAGTTTGTCCAGGATCTACAGCTTAAccagttgagtctatgggggcgctatttcattattggataaaaaaagtGCCccttttaagcgcaatattttgtcacgaaaagatgctcgactat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040256.1 False 2679 mRNA 0.43 4 9395496 9412390
TU2404560 True 636 lncRNA 0.46 2 9396077 9406624
Loading

Neighbor

gene id symbol gene type direction distance location
si:ch211-91p5.3 LOC106600195 coding upstream 25825 9348424 ~ 9369671 (+)
zgc:153935 LOC106600186 coding upstream 51439 9340229 ~ 9344057 (+)
sugt1 sugt1 coding upstream 140331 9231686 ~ 9255165 (+)
LOC110508153 LOC106600169 coding upstream 167499 9219477 ~ 9227997 (+)
LOC110508460 LOC106600156 coding upstream 186473 9180376 ~ 9209023 (+)
LOC110508466 LOC106600207 coding downstream 4301 9416691 ~ 9423308 (+)
LOC110516585 LOC106600212 coding downstream 59859 9472249 ~ 9474057 (+)
LOC110508469 nop9 coding downstream 152006 9564396 ~ 9569066 (+)
LOC110508474 LOC100380736 coding downstream 549880 9962270 ~ 9970046 (+)
LOC118944823 LOC100380736 coding downstream 558698 9971088 ~ 9974117 (+)
G2102289 NA non-coding upstream 2602 9392344 ~ 9392894 (+)
G2102165 NA non-coding upstream 243218 9150240 ~ 9152278 (+)
G2102181 NA non-coding upstream 245679 9149482 ~ 9149817 (+)
G2101905 NA non-coding upstream 375369 9019657 ~ 9020127 (+)
G2101884 NA non-coding upstream 411151 8984070 ~ 8984345 (+)
G2102300 NA non-coding downstream 35352 9447742 ~ 9448348 (+)
G2102306 NA non-coding downstream 41001 9453391 ~ 9474717 (+)
G2102387 NA non-coding downstream 166868 9579258 ~ 9581515 (+)
G2102416 NA non-coding downstream 207589 9619979 ~ 9620264 (+)
G2102422 NA non-coding downstream 227998 9640388 ~ 9706814 (+)
G2102205 NA other upstream 149281 9190961 ~ 9246215 (+)
G2101665 NA other upstream 763047 8627972 ~ 8632449 (+)
G2100382 LOC106600009 other upstream 1830950 7539189 ~ 7564546 (+)
G2100344 LOC107579696 other upstream 1967081 7427571 ~ 7428415 (+)
LOC110508407 LOC106599981 other upstream 2548508 6834257 ~ 6891325 (+)
G2102343 NA other downstream 84171 9496561 ~ 9501330 (+)
G2102469 NA other downstream 333283 9745673 ~ 9746174 (+)
G2102608 NA other downstream 568619 9981009 ~ 9982191 (+)
cbln12 cbln3 other downstream 821811 10228449 ~ 10237267 (+)
G2103305 NA other downstream 894441 10306831 ~ 10307973 (+)

Expression

LOC118944864(LOC106605357) Expression in all Baseline Samples

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LOC118944864(LOC106605357) Expression in each Bioproject

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LOC118944864(LOC106605357) Expression in each Sample
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Co-expression Network