LOC110508158 (LOC106598039)


Basic Information

Item Value
gene id LOC110508158
gene name LOC106598039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9938973 ~ 9940505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508158
ATGGAAAGGAGCCTTGGTTGGGGTGGATTTAAAtctgagagaggtggaggggtccCTCTGCATTCTTTCATACCTACCCCTCAGAGCTCTGTTCCTTTCCGCTGTGACAACAGACACTCGTCCCTTTCCTCcctgtccacctctccatcaCCGCCCACCCGCCGCCCATTCCTTTTGTCTCACGGAACCACTACCCTGGCCTTTGTGTTCCAAGGAGGTGTTATAGCAGCGGCAGACACACGTGCCAGCTGCTCAGGGCTtgtctcctgtccctctgtccagaAGATACTGCCCATCCACTCCCATTTACTGGTCACCACTTCAGGCAGTGGTGCAGACTGCATGCCATTGGAGAGAATCCTGGCTAGAGAGATCCGCCCTTTACCAGCTACGCCACGGCTGCCGCTTGTCAATCACTAGCTCTGCCAAGCTCCTCTCTCATATATTGGAACCATTTAAGGGGACTGATGTGTGTGTGGCAGCCATTCTATCTGGCTCGGATGTAGAGGAGGTTAGGGTTGATCGTTGTGGCCCAAAGCTCTTCTATGTGTGCAGTGACGGCACCCGTCTGCAGGGAGAGTTTTTCTCAGTGGGCTCAGGTTCGCCCTATGCCTATGCAGTACTGGATGGAGGGGTTCGGTGGAgcctgagggaggaggaggcaaTCTCATTGGCCAGAGAAATTGTGTACAGGGCCACACACAGGGATGCATGTTCAGGGAATTGTGTGGACCTCTTTCACATCACTGCCCAAGGATATAgccacagagacagggaggacttgagagaggagtaccacaaagagaagggagagggtgcTGAAGATGATTTCTACTCACAAAAGGACAAAGTCAGTGTAGAGTAA

Function

NR:

description
proteasome subunit beta type-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508158 True 865 mRNA 0.53 3 9938973 9940505

Neighbor

gene id symbol gene type direction distance location
LOC110508157 LOC106569426 coding downstream 1660 9897773 ~ 9937313 (-)
LOC110508473 LOC106600236 coding downstream 55002 9739138 ~ 9883971 (-)
LOC110508471 LOC106600234 coding downstream 263754 9629144 ~ 9675219 (-)
LOC110508470 LOC106600228 coding downstream 339350 9579184 ~ 9599623 (-)
LOC110508468 LOC106600218 coding downstream 398767 9500029 ~ 9540206 (-)
LOC110508476 LOC106600265 coding upstream 63721 10004226 ~ 10007929 (-)
LOC110508478 LOC106600269 coding upstream 90288 10030793 ~ 10041031 (-)
LOC118944863 NA coding upstream 117851 10058349 ~ 10060043 (-)
dhrs1 dhrs1 coding upstream 128361 10068866 ~ 10076428 (-)
mmp14b LOC106600280 coding upstream 212471 10152976 ~ 10174843 (-)
G2103098 NA non-coding downstream 10508 9928153 ~ 9928465 (-)
G2103095 NA non-coding downstream 12289 9926467 ~ 9926684 (-)
G2103090 NA non-coding downstream 16609 9922014 ~ 9922364 (-)
G2103044 NA non-coding downstream 101473 9837278 ~ 9837500 (-)
G2103042 NA non-coding downstream 104237 9834524 ~ 9834736 (-)
G2103111 NA non-coding upstream 4443 9944948 ~ 9945292 (-)
G2103115 NA non-coding upstream 6562 9947067 ~ 9947303 (-)
G2103127 NA non-coding upstream 28194 9968699 ~ 9974115 (-)
G2103148 NA non-coding upstream 77222 10017727 ~ 10017943 (-)
G2103153 NA non-coding upstream 81793 10022298 ~ 10022640 (-)
G2103015 NA other downstream 162065 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 369922 9567966 ~ 9569051 (-)
G2102731 sugt1 other downstream 683807 9231694 ~ 9255166 (-)
LOC110508459 LOC106599937 other downstream 758823 9154717 ~ 9180242 (-)
G2103203 LOC106600278 other upstream 172923 10113428 ~ 10115397 (-)
G2103257 NA other upstream 265558 10206063 ~ 10206676 (-)
G2103920 NA other upstream 767507 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 945693 10886198 ~ 10894141 (-)

Expression


Co-expression Network