LOC110508478 (LOC106600269)


Basic Information

Item Value
gene id LOC110508478
gene name LOC106600269
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10030793 ~ 10041031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589018.2
ACCCTCTCTATCGTCACTCAGGAGATGGTGGGGCCTGTGTGAGTTTCTGGTCCTCGTCTTGGCAGGACAGGGGAAACGCTCGGATTTTCAGAACTAAAGCAACAACTGACCGAGAGGGGTACAGTAAGGAAACGGGTTCAACCAATTGCTGATTCACTTCTAAAGGTGTATCATTATCAAGTATCCGTTTGGTTCTTAACTTGAGACAAAACAAAGTTCTAGAATTGTTTCGCGTCATTGTATCCGAAACGAGAACCCGTTTGAGGTTCGACGGATAGATAAAGCGACGGGGTCAGACAGACTATTGTTTCCTGTCCAACTTCAGCCATTAACAGGGTTAACAAAAAAAGACTGGgatataaaaaattaaataaaaactttATCCAACGCCAGAGAATAAATGGGCTAAAACATGATTCCGGTGTTTCTGTTGTGACTCACTGCCTCTGGTGTGGGGTCAAACTTCATTCTCAGAGGACGGAGAACTTGTGAAAAGAGGACAGAGCGCTTTGAAAAGTAGATGCAATTATACTTAGCTGTGGATATTGTCTCACATTCCTACAGCCCAAAGGACCAACTGCACGGACAACTGGTAAAACTGGAGTGACGTGCGGTGACACCACCGATGGCAACACACATTGACCGTAACAGAAGAATAGGCCTGGAGGTGAATATGGAGACATTCCAGAGTGACGTCACAAAGACGGCGTGTGAAGGAAAGCATGCCGCCCCGCGTTCCTCCAAAACGCCACACCACCAGATAACCAATGGAAAGAGCCATCTATCCTTTGACCACGATGCAACAGACAGTGATGGAGGCAAGGTTAGAGATGGTGGTGTTAGTTTCAGCACCAACCACAACTCTGTGGTGTGCCTGCCTTTGGTCTCTGAGGGCCCGAAGCTAGTATGGACACAGTCAAATCAGACACGTGAGCTTGACACCATCCAAGAGCTGATCCAGGCATTCAATGTGTTCCCATACCCAACATCTCGTGAGGTGAATGCCTTGGCACGGCTCTGTGCCCTGCCTCTGGACAAAGTCAAGGTCTGGTTCATGGTGCAGAGAATCAAATACGGCATCAGCTGGGCCTCAGAGGAGATTGAGGAGACGCGTGGCAAGCTGGCCGGACCTGAGTGGACTAACGACTATGCAAATGAGAAAGAGGAGATAAAGATGAGGAAGGGGTGTGGGGAGATGACTGTGGAAGCAGAGGACACAGGCCAAATGAATAATGGTCTTAACTCTTCCCTGCTCCACCCAAGAAAACGTGCCAGACATGAGACTCCAGAACACTGCAAACCAGCCTCCACCATCCGACATTTCAgttcctctctcccaccccctcagGATTCATACTACTACCGCCCTCCTGTAGACATGCCAGCAACTACCGCGACAGAGCCTTCCCTGAACCTCTCTGAGACCTCACTTGGCTCTCCACAGCGACAACAACGCGGACGCTACAAAAAGACCAAAGCTCAGCTTGCAGTCCTTCGCAGCAGCTTCCTGCGTGAAAACTGGCCTGCAGAGACAGAGCTCCGATGCCTGCAGAATGAAACGGGCCTGAGCCGCAATGACATCCGCAAATGGTTCAGCGACAGCCGGTACCAGCTTAGAAATGGGCGCGGACTGCTAAGAACATCCATGGTCTACCCTCAGCTCGTCATAGGAGAAGCAAAGGACGAGTCTCAGCAACTCCAGTCTTTTCCACGCGTAGCTCACAGGCCTCGGGATCAAGAAAATGATATTGAAGTGCAGAGAGGGGCTCAATGGAAGGGAGCTCGCAGCAATGGGGTGAAAGATTCACATTTCTTCCAGAACTTCCTGTCAAACAGCCTGGAGACCTTTGGGGAGGGAGCAGTAGAGGCGGAGGAGGACGAGGTTGCGGAGGAGGACGAGGTTGCAGAGGAAGCCTCTGTTCACACTGAGACTGTTAAGGAAGAGGAGGTGAAAAAGGAAGAAAAGCCCCTACAGTTGATTAGGGGCAACAAAGACCCAGAGATTAAACAACCACCATCATCCGTTACCATCTGTgcttcttcctccccctctcattctaccacccctcccctttcGACTATTGTCCCCACTATTAAGTATAGTTCCACTAGCACCAGCACCCTGCAGAAGTCTGCTCGCTCAGCCAAAGCCTCACTCacagccctgtctctctccagtcctccctcATCCTGGTCTACTCTTACACCTGCTGGCCGACTACGGAAGACCAAGGAACAACTGGACATACTAAAGGAGCACTTCCTGCACTGCCAGTGGCCTATGAGTGAGGACTACACCCAGCTGGTAGAACTCACAGGCTTGCCCCGTGCAGACATCATCCAGTGGTTTGGGGATACGCGCTACGCTGTTAAAAATGGGCAGCTACGCTGGGTGCAGGGGGTCCGTGAGCAATTTCTGTCTGAACTAGCCACACAGCAAAATGGCAGTGGAGTCACCGGTGGAAACTGTTCCAGTGGGATCCCTCGGGTTATGGGTAGCCGCAAACGTAAGTCTCAAGCGAATGGCGCCACAGCAGCATCCACTGCCGATTTCCCGGACATCAAGCCGCTGGGGGTTTACCATCGCTTGACTGGGGTTCTTCATGAGAAAGACCTTGATGCCCTTTGCAAAAAGTCACGAATGAGCTACCAGCAGGTGCGAGACTGGTTTGCATCTCAGGAGAGCAAGGAAATTGACCCAGAAACCAATGTTACTGATTGAGATGAGGAAATTGTGGGCGGATAAGGGTTGGAAATCAGCACTCTTTTTACAGAGGACAAGACTGATCATCTCTACGCAGAACGATGACGCTCCTTAGTTACAAAAACGTTTCATATTGAATTGACTTTGCTCTAATGTGAGCAGGTGTGACTCTTAAATGCTTACAGTCTTTGTAGTATAAGCACagatctggtgactgtgctgAATTATTGCTGCATTCAGTGTTTTGTTTTCTCATAAGCTTGGTCTTGAAGTCCTGCTTGTGCTGCCTGCCTACTATAGATAGGACAGTACCTAGTGCACTGGTTCAATTCCCCCACCCCCttattttgtttgtgtgttgtgATATAATTTGTAGTCCAGTATTGTAGCAAAATATAATTAACTGGATATAAAGTATGTATTGGTTGGAGCTCCTTAGGTAGTGTGGTTCTCCATTTTATTCAGAAGTGAAACTACACTGTGGAAACCTAAATAGAACAATTTATGAGCCTTAGGGTAAAGACACTGACTAATCACTGAAAGTATTTTCATTCCTTTACAACCTACAATTCCTCTTCGCTAAATTAACAAACTGGACATTAACACTTTATCCTTCTAAATAGACACGTTGCACTTGAATTTTTTTAACCCTGACATTTTAGCTGCCATAATGTTAATTAAATAGATTCCTTTTTATAAAAGTTTGAATTCCTATTAAAATTGTTATGCAGTTTGCACTGACCTACAAATGTTTTAAAGTGAAGTTCAATGTCCATGCAGACCATATGTTCAAAACATTTTGATCAACTGAATTGCACTCTTTGGTCCTGTAAAATCCTGTATTTGTGGCCTCTGCTCACCAATTATGTTCTGAAGGGCTGCAATGTAGGCTTATTTTATTGTTGTGTGTGCAGTTTATTTCCCCTTGTTCATACCCCAGATTGGTGGGAGTAGAGTATTCTGCCTATATCGAGCATTTGTGTGAGTAGAATGATTAGGGGCACAGAGGTCACTGGAATTGTGTAGTCCAACCAAATTCCAAGTTCAGGCATAGATAGATAGATTGGCTTAGTCCACTATAATCCAAAGCAATAACTAGTGTTTTGTGCAGGCCATTTCCTATGCCTCAGAGATTAAAAAGCATGCAAATGTGTCATTCAAACAGGTATACTGGAAAGTATTTAATCAACATTTTCTAGTGTAGAAGTTTATTCTGTTAGCTATGAGAAGATTACACGTGGAAGTACAAGAATACTGAAGGAGAAATGTTAATGTCCTATTACACTTGTCACATTGCAGCCTTCAGTTGTAAACCGTTATTTACATTTGTACTTCACTGGATAGATGGCACtcattttcataaattcatcTTTGTTAAATTTCAAATGTGCCCTACTGCGTCACTAGAAACAAGTAAAAAAACATATTTGCAAATGTGTGAATGTTTTCTTGTTTGTGTGAACTGGTTCGATGGAGGCCTTTCATTCCCTGAACTTTCTGAGATGGGGGTCAGTTTTTCATCACAGATGCTGCAGAAAGAGGTAAGAACTATGCCATAATACTTAGTTGTCTTTTGGCTTAATGTTATGTTAAGTCACATACTGAAATCAATCAGAATTTATCAATTGGATTTCAGTTTTGTCATTGACGAAATGTTATTTTAATTCCAATGGGGTTTACTTGCCATTTCTGAAAAGATTTGCAGAGTGTAGTGATTAACCCAGTCAAGAACTGGTATTGGATGTTAGTCAGATTCTCAGAcctgagaatagaggagagaggtagtAGTTAAGACTGAGCAGACAACTTTCAATGATGCACTGTGGAAATCAACTGATATTAATTCATTCTTACCGGATGGGAGTGTTAATAATGGTGGGTGTCCCTATTCGGAGAGATAAAAACGATTAACATTTcagtcccacatttgacagtttGATGTTCCAAGTGATTAACAGAAAAATAAAGTATTGTTCCATGAATGGATAACCATGGCATGCTAAG
>XM_021589019.2
CACCCTCTCTATCGTCACTCAGGAGATGGTGGGGCCTGTGTGAGTTTCTGGTCCTCGTCTTGGCAGGACAGGGGAAACGCTCGGATTTTCAGAACTAAAGCAACAACTGACCGAGAGGGGTACAGTAAGGAAACGGGTTCAACCAATTGCTGATTCACTTCTAAAGGTGTATCATTATCAAGTATCCGTTTGGTTCTTAACTTGAGACAAAACAAAGTTCTAGAATTGTTTCGCGTCATTGTATCCGAAACGAGAACCCGTTTGAGGTTCGACGGATAGATAAAGCGACGGGGTCAGACAGACTATTGTTTCCTGTCCAACTTCAGCCATTAACAGGGTTAACAAAAAAAGACTGGgatataaaaaattaaataaaaactttATCCAACGCCAGAGAATAAATGGGCTAAAACATGATTCCGGTGTTTCTGTTGTGACTCACTGCCTCTGGTGTGGGGTCAAACTTCATTCTCAGAGGACGGAGAACTTGTGAAAAGAGGACAGAGCGCTTTGAAAAGTAGATGCAATTATACTTAGCTGTGGATATTGTCTCACATTCCTACAGCCCAAAGGACCAACTGCACGGACAACTGACTGGAGTGACGTGCGGTGACACCACCGATGGCAACACACATTGACCGTAACAGAAGAATAGGCCTGGAGGTGAATATGGAGACATTCCAGAGTGACGTCACAAAGACGGCGTGTGAAGGAAAGCATGCCGCCCCGCGTTCCTCCAAAACGCCACACCACCAGATAACCAATGGAAAGAGCCATCTATCCTTTGACCACGATGCAACAGACAGTGATGGAGGCAAGGTTAGAGATGGTGGTGTTAGTTTCAGCACCAACCACAACTCTGTGGTGTGCCTGCCTTTGGTCTCTGAGGGCCCGAAGCTAGTATGGACACAGTCAAATCAGACACGTGAGCTTGACACCATCCAAGAGCTGATCCAGGCATTCAATGTGTTCCCATACCCAACATCTCGTGAGGTGAATGCCTTGGCACGGCTCTGTGCCCTGCCTCTGGACAAAGTCAAGGTCTGGTTCATGGTGCAGAGAATCAAATACGGCATCAGCTGGGCCTCAGAGGAGATTGAGGAGACGCGTGGCAAGCTGGCCGGACCTGAGTGGACTAACGACTATGCAAATGAGAAAGAGGAGATAAAGATGAGGAAGGGGTGTGGGGAGATGACTGTGGAAGCAGAGGACACAGGCCAAATGAATAATGGTCTTAACTCTTCCCTGCTCCACCCAAGAAAACGTGCCAGACATGAGACTCCAGAACACTGCAAACCAGCCTCCACCATCCGACATTTCAgttcctctctcccaccccctcagGATTCATACTACTACCGCCCTCCTGTAGACATGCCAGCAACTACCGCGACAGAGCCTTCCCTGAACCTCTCTGAGACCTCACTTGGCTCTCCACAGCGACAACAACGCGGACGCTACAAAAAGACCAAAGCTCAGCTTGCAGTCCTTCGCAGCAGCTTCCTGCGTGAAAACTGGCCTGCAGAGACAGAGCTCCGATGCCTGCAGAATGAAACGGGCCTGAGCCGCAATGACATCCGCAAATGGTTCAGCGACAGCCGGTACCAGCTTAGAAATGGGCGCGGACTGCTAAGAACATCCATGGTCTACCCTCAGCTCGTCATAGGAGAAGCAAAGGACGAGTCTCAGCAACTCCAGTCTTTTCCACGCGTAGCTCACAGGCCTCGGGATCAAGAAAATGATATTGAAGTGCAGAGAGGGGCTCAATGGAAGGGAGCTCGCAGCAATGGGGTGAAAGATTCACATTTCTTCCAGAACTTCCTGTCAAACAGCCTGGAGACCTTTGGGGAGGGAGCAGTAGAGGCGGAGGAGGACGAGGTTGCGGAGGAGGACGAGGTTGCAGAGGAAGCCTCTGTTCACACTGAGACTGTTAAGGAAGAGGAGGTGAAAAAGGAAGAAAAGCCCCTACAGTTGATTAGGGGCAACAAAGACCCAGAGATTAAACAACCACCATCATCCGTTACCATCTGTgcttcttcctccccctctcattctaccacccctcccctttcGACTATTGTCCCCACTATTAAGTATAGTTCCACTAGCACCAGCACCCTGCAGAAGTCTGCTCGCTCAGCCAAAGCCTCACTCacagccctgtctctctccagtcctccctcATCCTGGTCTACTCTTACACCTGCTGGCCGACTACGGAAGACCAAGGAACAACTGGACATACTAAAGGAGCACTTCCTGCACTGCCAGTGGCCTATGAGTGAGGACTACACCCAGCTGGTAGAACTCACAGGCTTGCCCCGTGCAGACATCATCCAGTGGTTTGGGGATACGCGCTACGCTGTTAAAAATGGGCAGCTACGCTGGGTGCAGGGGGTCCGTGAGCAATTTCTGTCTGAACTAGCCACACAGCAAAATGGCAGTGGAGTCACCGGTGGAAACTGTTCCAGTGGGATCCCTCGGGTTATGGGTAGCCGCAAACGTAAGTCTCAAGCGAATGGCGCCACAGCAGCATCCACTGCCGATTTCCCGGACATCAAGCCGCTGGGGGTTTACCATCGCTTGACTGGGGTTCTTCATGAGAAAGACCTTGATGCCCTTTGCAAAAAGTCACGAATGAGCTACCAGCAGGTGCGAGACTGGTTTGCATCTCAGGAGAGCAAGGAAATTGACCCAGAAACCAATGTTACTGATTGAGATGAGGAAATTGTGGGCGGATAAGGGTTGGAAATCAGCACTCTTTTTACAGAGGACAAGACTGATCATCTCTACGCAGAACGATGACGCTCCTTAGTTACAAAAACGTTTCATATTGAATTGACTTTGCTCTAATGTGAGCAGGTGTGACTCTTAAATGCTTACAGTCTTTGTAGTATAAGCACagatctggtgactgtgctgAATTATTGCTGCATTCAGTGTTTTGTTTTCTCATAAGCTTGGTCTTGAAGTCCTGCTTGTGCTGCCTGCCTACTATAGATAGGACAGTACCTAGTGCACTGGTTCAATTCCCCCACCCCCttattttgtttgtgtgttgtgATATAATTTGTAGTCCAGTATTGTAGCAAAATATAATTAACTGGATATAAAGTATGTATTGGTTGGAGCTCCTTAGGTAGTGTGGTTCTCCATTTTATTCAGAAGTGAAACTACACTGTGGAAACCTAAATAGAACAATTTATGAGCCTTAGGGTAAAGACACTGACTAATCACTGAAAGTATTTTCATTCCTTTACAACCTACAATTCCTCTTCGCTAAATTAACAAACTGGACATTAACACTTTATCCTTCTAAATAGACACGTTGCACTTGAATTTTTTTAACCCTGACATTTTAGCTGCCATAATGTTAATTAAATAGATTCCTTTTTATAAAAGTTTGAATTCCTATTAAAATTGTTATGCAGTTTGCACTGACCTACAAATGTTTTAAAGTGAAGTTCAATGTCCATGCAGACCATATGTTCAAAACATTTTGATCAACTGAATTGCACTCTTTGGTCCTGTAAAATCCTGTATTTGTGGCCTCTGCTCACCAATTATGTTCTGAAGGGCTGCAATGTAGGCTTATTTTATTGTTGTGTGTGCAGTTTATTTCCCCTTGTTCATACCCCAGATTGGTGGGAGTAGAGTATTCTGCCTATATCGAGCATTTGTGTGAGTAGAATGATTAGGGGCACAGAGGTCACTGGAATTGTGTAGTCCAACCAAATTCCAAGTTCAGGCATAGATAGATAGATTGGCTTAGTCCACTATAATCCAAAGCAATAACTAGTGTTTTGTGCAGGCCATTTCCTATGCCTCAGAGATTAAAAAGCATGCAAATGTGTCATTCAAACAGGTATACTGGAAAGTATTTAATCAACATTTTCTAGTGTAGAAGTTTATTCTGTTAGCTATGAGAAGATTACACGTGGAAGTACAAGAATACTGAAGGAGAAATGTTAATGTCCTATTACACTTGTCACATTGCAGCCTTCAGTTGTAAACCGTTATTTACATTTGTACTTCACTGGATAGATGGCACtcattttcataaattcatcTTTGTTAAATTTCAAATGTGCCCTACTGCGTCACTAGAAACAAGTAAAAAAACATATTTGCAAATGTGTGAATGTTTTCTTGTTTGTGTGAACTGGTTCGATGGAGGCCTTTCATTCCCTGAACTTTCTGAGATGGGGGTCAGTTTTTCATCACAGATGCTGCAGAAAGAGGTAAGAACTATGCCATAATACTTAGTTGTCTTTTGGCTTAATGTTATGTTAAGTCACATACTGAAATCAATCAGAATTTATCAATTGGATTTCAGTTTTGTCATTGACGAAATGTTATTTTAATTCCAATGGGGTTTACTTGCCATTTCTGAAAAGATTTGCAGAGTGTAGTGATTAACCCAGTCAAGAACTGGTATTGGATGTTAGTCAGATTCTCAGAcctgagaatagaggagagaggtagtAGTTAAGACTGAGCAGACAACTTTCAATGATGCACTGTGGAAATCAACTGATATTAATTCATTCTTACCGGATGGGAGTGTTAATAATGGTGGGTGTCCCTATTCGGAGAGATAAAAACGATTAACATTTcagtcccacatttgacagtttGATGTTCCAAGTGATTAACAGAAAAATAAAGTATTGTTCCATGAATGGATAACCATGGCATGCTAAG

Function

NR:

description
zinc fingers and homeoboxes protein 1-like

GO: NA

KEGG:

id description
K24883 HOMEZ; homeobox and leucine zipper protein Homez

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589018.2 False 4708 mRNA 0.45 3 10030793 10041030
XM_021589019.2 True 4704 mRNA 0.45 3 10030793 10041031

Neighbor

gene id symbol gene type direction distance location
LOC110508476 LOC106600265 coding downstream 22864 10004226 ~ 10007929 (-)
LOC110508158 LOC106598039 coding downstream 90288 9938973 ~ 9940505 (-)
LOC110508157 LOC106569426 coding downstream 93480 9897773 ~ 9937313 (-)
LOC110508473 LOC106600236 coding downstream 146822 9739138 ~ 9883971 (-)
LOC110508471 LOC106600234 coding downstream 355574 9629144 ~ 9675219 (-)
LOC118944863 NA coding upstream 17325 10058349 ~ 10060043 (-)
dhrs1 dhrs1 coding upstream 27835 10068866 ~ 10076428 (-)
mmp14b LOC106600280 coding upstream 111945 10152976 ~ 10174843 (-)
LOC110508484 LOC106600289 coding upstream 137365 10178396 ~ 10195465 (-)
LOC110508487 NA coding upstream 196324 10237355 ~ 10244790 (-)
G2103153 NA non-coding downstream 8153 10022298 ~ 10022640 (-)
G2103148 NA non-coding downstream 12850 10017727 ~ 10017943 (-)
G2103127 NA non-coding downstream 56678 9968699 ~ 9974115 (-)
G2103115 NA non-coding downstream 83490 9947067 ~ 9947303 (-)
G2103111 NA non-coding downstream 85501 9944948 ~ 9945292 (-)
G2103229 NA non-coding upstream 134898 10175929 ~ 10176164 (-)
G2103231 NA non-coding upstream 142877 10183908 ~ 10184116 (-)
G2103233 NA non-coding upstream 144960 10185991 ~ 10186191 (-)
G2103234 NA non-coding upstream 146477 10187508 ~ 10187723 (-)
G2103015 NA other downstream 253885 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 461742 9567966 ~ 9569051 (-)
G2102731 sugt1 other downstream 775627 9231694 ~ 9255166 (-)
G2103203 LOC106600278 other upstream 72397 10113428 ~ 10115397 (-)
G2103257 NA other upstream 165032 10206063 ~ 10206676 (-)
G2103920 NA other upstream 666981 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 845167 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1458095 11499126 ~ 11500072 (-)

Expression


Co-expression Network