mmp14b (LOC106600280)



Basic Information


Item Value
gene id mmp14b
gene name LOC106600280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10152976 ~ 10174843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021589022.2
caAAGGCCTCGCGGGACTGTCAAACTAGCAGTTGCtgtgtggcagagagagagggggtgaagaaagAAGAATCAAAACATCCCGACCATCCCGACACGAGAAACATTTAGGGGAAGCTGCAaataaatatataggcctaaaacgCTGAGACGGCGACAAAGGGAAACAAGGTTGTCGTTTATAATTATTGTGGAATGTGAGCTGTTAAAACGTTGCCAAATTATTGATGCAACTTCTCGCAGCTCTTTAATCAAGTTACTCCTCAGTTTATGTTTACAAATACATCTGGTTTTGATTTTTAGAACAAGTAAAGAATGCCCGGCTTTCATCAACGCAAATTGCTGTttaaacaattatatttttgatCCATAATTTTGAATTTGGAAGCGTTCTTCCAACCGGTGTAGCTACTTCAAGAATCAAGGAAAAGTGATACAGGGAAAACAGAAGCTATTTGGTCGTTTTTGCCGGTGTCGTGGTCGAGGAATGGCACTCCGTGTAGAGGCATATGCCCAATTGCTGTTGCTCGTGTTGGCATTGGACCTGAGCGTGCAAGGAGCGGCGCCACAGTATCAAAAACCAGAGGTGTGGCTGCAGCAGTATGGCTACCTGCCCCCAGGTGACCTGCGGACACACGCTGCCCGTTCCCCTCACTCCATCACCACGGCCATCGCAGCCATGCAGAGGTTCTACGGCCTGACCATCACCGGCTCCATTGACCCCAAAACTGTAGAGGCAATGAAGCGGCCACGCTGTGGAGTTCCAGACAAGTTCGGGACTGAGCTGAAGAGTAACCTGAGAAAGAAGCGCTACGCTATCCAGGGCCTGAAATGGGATAAGACTGATCTCACCTTCTGtATACAGAACTACACCCCTAAGGTGGGGGAGTATGAGACCCATGACGCTATCAGGAAAGCCTTCAAGGTGTGGGAGAGTGTGACCCCTCTACGCTTCCGGGAGATCCCCTACAGTCACATACGGGACAAGGTGGAGGACTTTGCCGACATCATGCTCTTCTTCGGTGAGGGTTTCCATGGCGACTCCAGTCCCTTTGACGGCGAGGGGGGTTTCTTGGCACATGCCTACTTCCCCGGTAACGGCATAGGGGGAGACACACACTTTGACTCTGCAGAGCCTTGGACGGTCGGCAACAGTGATCTGTCAGGTAATGACGTGTTCCTGGTGTCGGTACATGAGTTGGGTCATGCCCTGGGTCTGGAGCACTCCAACGACCCCTCTGCCATCATGGCTCCATTCTAccagtggatggagacagagaactTCCAGCTGCCTGAAGATGACCTCAGGGGAATACAGCAAATCTATGGGGGTAGATCAGGTGGTGGCCCCCGCCCTCCCCCACCTAGCCCACGCTCCCCTCACCACCCACCCAAACCCACTCACACCCCATACAACCCTCGCTTTGGCCCCGACATCTGTGAGGGACACTTTGACACCATCGCCATCCTCCGAGGAGAAATATTTGTCTTCAAGgatAAGTGGTTCTGGAGAGTCCGTAACAACGCAGTTCTGGACGGATACCCAATGCCAATAGGCCATTTCTGGAGAGGCCTGCCATCAAACATCAATGCTGCTTATGAAAGGGATGATGGGAACTTTGTATTTTTCAAGGgagaCAGGCACTGGGTTTTCAAGGAATCTATTCTGGAGGATGGTTATCCCAAGTCTCTAAAGGAGATGGGCAGTGGTCTACCCAAAGACAAAATAGATGCCGCCCTCTTCTACACCCCCACCGGCAAGACATACTTCTTCAGGGGAAACAAGTACTATCGTTACAATGAGGACTCACGCTCTGTGGACCCTGAATACCCCAAACCAATCAATGTGTGGCAGGGCGTCCCAGACAATATTAAAGCTGGCTTCATGAGCAGAGACCAAGGACACACCTACTTCTACAAAGCCAATAAGTATTGGAAGTTCAACAACCAGAAGCTTCGTGTAGAGCCTGGATTCCCCAAGTCTGCTCTTAAAGACTGGATGGGTTGTCCAGAGGAGGACCCCAAGACCGACGGAGGAAGGGGGGGTGGAGGACATGACCgggaagacagagaggaggatagagatgaGACAGAAGTAATCATCAtcgaggtggaggaggaaggaggatcTGGCGGAGGGGCGGGTGCGGCGGCAGTGGTGGTTCCCCTCATGCTGTTGGTGTGTGTGATCCTCACTCTGGGGGCACTGCTGTTCTTCCGCAGGTATGGCACCCCACGCCGTCTCCTGTACTGCCAACGCTCCCTACTGGACAAggtgtagaggggaggagagggagaggagagaaagggaggagagagaggaggttgatgAGTTGAGAGGGGctgtaggggagagaagagagcaaATAGAGAGTAATACTAGTGGAGATAAAAAGAGAAGTCTGTGGACCTTGAATGAGGGTTAGCCAGAGCCAAGATATACTTGTTAGCTATGGCTAAAATATTCCTACCACTACCAACTTAAACATGGAGGAGATTCCTTTTTCTCTTCCACTCCCACTCTTTTCTGCCATTTctgtcccctcttctcttccctcctttctctctcgttctttctgtGGTTGTTGACTCCAGCTCTTCGCTGTTTGTTTAGCCTTTTTAAATGTCCTTTTTTTTAGTGGGTGTCGTCAGTGTTTGTGTCCTTGCGAATTTCAGCTTTGAACATGACTATGTCCAGTGCCTCCATCTGCCCATATTTAGTGTCGACTGTGTCAAAGAATGCAATCGGCATCATTTCATGTCGTGTGGATGTTCTGCTCCATGATAGTACATGACGCTAGATTCTGTCAAAGCCTTTTACCCATTAAGCGTTGTCTCCTATATCTCAGTTCTATCACATGAACTATGAACTGTCTAAAGAGAGGGGGTATATATCAGATAAGTCTATTCACTAAACACTCAATGAAACACGAAAAGTGCTGCAGTCAATGCGCGCCCCCAGTCCATCCTTACCACAATTTCATATCTGGATATTTCAGAGAGCCAGTATTGAACATAAAAAAATGCCAAATTATACACCTAGTGTCCCTTTGAAGCATATATAACACTCATTTGAAAGCTGAGCAATTTGTCTGTGTCATTAATATTCCTTTATGTCATGCAGTGTTttagtgattattattattatgattattattatccaggatgttgtcattattattatgtCTATTACTATTGTTATTGTTGTTCTCCATGTATAGAATGTGTTTGTGTACATTGTCATTAAATGTCCTGCTGGACAGGGAACTACATTTTGAAAGTGGCCTTAATTTTATATTCATTTTGGGGGAAAGTGAATGGGATGGGGATATTATTTTTGAAACTTGATTGTTTTTCCGTCTCAATGCAATAAATTGAAGATATGGAAATGACTCCTTTTTGTCAATGCACTTGTTTACAGTTCTCAATTCATggtgctgtttttttttatttttcagggATGAGAGGGTTTACTAGTAGTAAAAACaataataattatattaatttTTATGATAATAATGATAACTATCGGAACTATTTGAATGAGATTGTGCCTGTCTTTTTCACTTTTACACTTTTctttcaaataaaatgttttgaaaAGTT

Function


NR:

description
matrix metalloproteinase-14-like

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021589022.2 True 3605 mRNA 0.46 10 10152976 10174843

Neighbor


gene id symbol gene type direction distance location
dhrs1 dhrs1 coding downstream 76548 10068866 ~ 10076428 (-)
LOC118944863 NA coding downstream 92933 10058349 ~ 10060043 (-)
LOC110508478 LOC106600269 coding downstream 111945 10030793 ~ 10041031 (-)
LOC110508476 LOC106600265 coding downstream 145047 10004226 ~ 10007929 (-)
LOC110508158 LOC106598039 coding downstream 212471 9938973 ~ 9940505 (-)
LOC110508484 LOC106600289 coding upstream 3553 10178396 ~ 10195465 (-)
LOC110508487 NA coding upstream 62512 10237355 ~ 10244790 (-)
LOC110508490 LOC106600323 coding upstream 117168 10292011 ~ 10301368 (-)
LOC110508491 LOC106600322 coding upstream 126645 10301488 ~ 10306620 (-)
LOC110508492 LOC106600326 coding upstream 131868 10306711 ~ 10323084 (-)
G2103153 NA non-coding downstream 130336 10022298 ~ 10022640 (-)
G2103148 NA non-coding downstream 135033 10017727 ~ 10017943 (-)
G2103127 NA non-coding downstream 178861 9968699 ~ 9974115 (-)
G2103115 NA non-coding downstream 205673 9947067 ~ 9947303 (-)
G2103229 NA non-coding upstream 1086 10175929 ~ 10176164 (-)
G2103231 NA non-coding upstream 9065 10183908 ~ 10184116 (-)
G2103233 NA non-coding upstream 11148 10185991 ~ 10186191 (-)
G2103234 NA non-coding upstream 12665 10187508 ~ 10187723 (-)
G2103237 NA non-coding upstream 15795 10190638 ~ 10190863 (-)
G2103203 LOC106600278 other downstream 37579 10113428 ~ 10115397 (-)
LOC110508473 LOC106600236 other downstream 341118 9739138 ~ 9883971 (-)
G2103015 NA other downstream 376068 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 583925 9567966 ~ 9569051 (-)
G2103257 NA other upstream 31220 10206063 ~ 10206676 (-)
G2103920 NA other upstream 533169 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 711355 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1324283 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 5364925 15539768 ~ 15554897 (-)

Expression



Co-expression Network