LOC110508484 (LOC106600289)


Basic Information

Item Value
gene id LOC110508484
gene name LOC106600289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10178396 ~ 10195465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589023.2
CAGCCGCCACTGCCGCAGAAACCAGACACAGACCGAGAAGCAGGCCGCCCTCGCCAAATAGCCTACAAAGAGGATTGaaaagggaaggggaggaggatgacAGGAATACTAATCCAATTCCCTTTCATTACCGCATAGTAGGCTAGCCTATCTTCACCCTCCCCCGCCTCTTTCTCTGGGTCAGTAAAAACAATGAATTGATACATTTAAGATACCAAATAGTCCCTCTACACTGCGAcgatataaataaataatttgccAATGCGGTGTTCCGCCCGTCTGTCTCAGGGACGACTGCGCATCTTTGTGGCTGAATGCCGGAAAAGGCTATGTCGATGTCCCGACTGGGAGACTTAGCCTATTGCCCAACATATTTTATCATTTTGTAAACCACAGTCAAATATCATCGATTCTAACATGTGTGCAGGGAGAAAAAAATCTAAGCATTCTGTTGGCCCATGTACCGCTGCATCAGTCGCGTCCTGCTGAAGCATGTCTCGTCGGAAACAGAAACGACCCCAGCAGCTCATGAGCCCGCTCCCTGCCGCCTCTCCAATACTAGAGCATGATGACCAGTTGGCAGTGAAGTCATTTTCCTTTCCTCTGACCACagactcctcctcttcttcatcttccttctctcctcaaaGATACCACCCCCCCCTGGCTCAAGGTCCCAACTTCGGGGGGCTTCACACCCCCTCTCTACCAAGCGAGGGCTCCCCCCTCTCCCGCTCCCCCTGCCAGCCCACTCCCTGCCCCATCTCCCTCGCAGACCCccagtcctccctctcccctgaCTTCCccgatccctccctctcctcccagacaGTCCTGAGCCTCCCCGACCTCACCTCCACGTCACCTTCCAATCAGACCCACCCTCCCCGCTCTCTCATGGCCTCTCCCAAGCTAGGCGTGTCAGCcactaccacctcctcctcctcttcatcagctTCCCTCTGCCCCCCGCCCCACCCCGGCAGCCCTAGCCCCGTTCCAGAGGGCCCCCCCAGCCCCGTGACGCCCTCCCCAAGCCCGGGCACTGCCTCTGCCCCTCCACCCCGTGCCCACCTTAGCATTGCAGTGATCCTGGAAGAGCTGCGGGTGCTGCAGCAGAGGCAAATCCACCAGATGCAGATGACGGAGGAGATCTGCAGGCAGGTGCTGCGGCTGGGTGGGGCCTCCTGTGCCCTGGAGGTGCCCCAGATCCTCCTGCCTCCTCTGccccagctctgtctggagggcAGTGAGAGGACGTCCAGTCCTCCCCAGCCTACACCCACTCAGCCTCCTAACACTGTAGCCCCTCTCCTGGCCTGCTTCTCCACCTTGCTCCCTCCCCAGCCTGCCTCCAAGCCCTCCAAGCCCAGCCACAGCCTGTCCCATGTCCTGCGTCCACACAAGCCTCAGACGGAGGGTGCAGGAGGGGCTACTGGGTCTTATCTTTACCCTGGGACCAGTGTCcgcccttcctcctcctcttcttcctcctcggCCTCGTCTGCCATCTCCACCATGGCTTCCTCCAACTACCCCCTGGCCCTCTCCCTGGCCTTGCCCACTCGTTTCCTCCATGAGAAATCCCCCAACACCACCTTAACCAGTGGCCACAGTGGTCTGTCCTTCCTCACCCCGCCCCTGCCCACCACTGCCTCTATGGCACCCCCCTCCTCTCAGGAGCCccacctgtctgtctcctcagcggggtcctcatcctcctccctggGGCGTCTGCAGCATGCCTGTCGGTTCTGtgggaagctgttcagcagtgaCTCGTCCCTGCAGATCCACCTGCGCTCCCACACGGGTGAGAGGCCCTACCAGTGCCCTGTCTGCCTCAGCCGCTTCACCACCCGCGGCAACCTCAAGGTTCACTTCCTCCGCCACCGCGAGCAGAACCCAGAGCTCTCgctttccctcctccccccctccctattTGGAATGGGTATGGGACCAGTGGGGGGGTCTGAGCCCCAGGGTCAGCCAATGAGCAGCACTGGCCTGAGCGTAAGCGCAGCGCAGGCTCAGAGGCGTCGTAAACGGCGAGCCGAGGATGACCCGTATGGAGACGGTATGGAGGTGGATGGTGCCGGAGGGGGATTTTCTCTGGGGATATCCACCGGTGCTCCCCCCTCTTCACTCCCCCTGCCCCCCAGTGTGGACCTGGCCCTCATCTCCACCGCCCACTCCCTCCTGCGGCTCAACCAAGCCGCTGCTGCAGCGGCCGCTGCCTCCATATCCTCTGCTGCTTCCTCACTCacatcctcttcttcttcctctgcgTCCTCCTCCCTcgcctcctctcacctctctgtcccctcctcggCCGCCTCCGCCATTGCTGGGTTCTTTAAAGGGGCCAAGCAGCAGTGCTTTGATGAGAACACGCCTCCTCACCTTCCCATGATGTCTCACTCTGCTTACTCCCAGCTGGCCCACCTCCCTAAACTCCTCTTCCCCTCTGGTTCCCCCCACCATCACCCTGCCTTGGGCCTACTCCGCCCTCCACCCCCTGCTCCAGGCTCTTcccacctctcctccacccactctcagctctccttccccttctcccaCTACCCCAAAGCCCAGGCcttcaccacctccacctcctcctccactccctcctcagACACCTCCAAGTTGCAGCGGCTGGTGGAAAAGCTGGAGAAGGAGCCTCCCACCTCCTCTTCCTGGGCCTCCTCCTCAGGAGAGACCTCTCACAGCAGCATGGCCTCCACTGGGTTGTTCAGCAGCGGCCTCATGGGTGCTAGTACCTCCAGTACCTACGTGATGGCCTCCCCATCATCCTCCACCCACGTCCCCACCTCTGTCTCCAACTTCACCAGAGAGATGGTGGCCGCTCTGGGCATGAGTGCCAACGGGGGCAGCGCTCTGGCAGGCGCCATTCTCCCCGGCCTAGGCATCATGAGCACTGGCTCCCTGGCCCCCAACCAGTGTGGGGTATGTCTACGTGTGCTGAGCTGCCCCAGGGCACTGCGTCTGCACCAGGCCACCCACCTGGGTGAGCGCCCCTTCCCCTGTAAACTGTGTGGACGCTCCTTCTCCACCAAGGGCAGCCTGCGGTCCCACCTGGCCACCCACCGTGCCCGCCCGCCCAACTCCCGTGCCCAAAACTCCTGCCCACTGTGCCAGCGCAAGTTCACCAATGCACTGGTGCTGCAACACCACATCCGCATGCACCTGGGAGGGCAGCTGCCACCGGAGGGAGCTCCGGAGTCTCTGTCAGAGCCAATAGCAGAGCCAGACGCTGTATCCCAGCCCAAGCCCAATGACACCTCCGATGTTTCTTTTGAGAGGTTCACTGCAGCCTCAGGCAGCCAGTCAAAGAGCTCAGCAGCGTCCACCCACATTCAAACCCTAGTAGGAGCCTCTGCCCCCATATCCGTCAGTGTGACATCACCAGCGTGTGTCGGGGAGCCAAGCAGATCTCACTCCTCCAGCCCTGACCTGATCCCACCCTCTGACCTCAGCCCTGACCCTTTCCTAAACCCCACCTCACTTACCCCTCCGCCTGGCAGCGCAGACCCCCCGGTCCTGTGTGTCAGCGTGCCCTCCCCACCTCCAGCCCTGGGCGATTCAAGCTCCCCAGTCAGTGATGGCAAACATGCGGAACTCCTTGATACAACCATTGATACTCCAGCGAGTAAGACAAGCCCCGCTCACACTTCCTCCAGTGTTCTCAAAACCACCCCCTTGTCCAGTCTCATGATGTCAGACTGTCTATTGGGTGAGAATTCCATTCCTCTCGATGTCTTCTTCCCTGGCCCAAGATCAAACCTGGAAGATCTACTGAGCACTCCAACACTTGGTGCACCAGTAGCACACCCTAGCCCAGCCCCCTCCTTCACCTCTGTCCTTAGCCCAGAGTACCCTAAAACCTACCTAGCACCCACACTAGACCCTGAACAGCCTACTAAACCCAACACCCCAGAGcccacagaggaagacagggttgAAACCTCCCCACCTGCAGCACCAAAGCAAGCCCCTGTGCTTGATATGGACCACAGAATGGCACCACTGTCAGAGACTACAGAGACAGGCAACACTGAGGCTGGGGATGTGCCCCAGAAAGCTGTCGCCTACACCAGGGAGACGAGGCTGGGGGCGTACCTCAGCTCCCATGGGAAGGAGGATGGGATGGGTGGTGTCAGAGACCGACTGGAAGGCACTGTTCCAATCAGTCTggctcccactctccctcctcccatgTCTCGCCCTGAGAAAAAGACCTACAGCTGTGTCGAGTGTGGGAAAGAGTATGCCAGCCGCAGTGGACTGAAgGGACACATGAAGCATCATGGAGGGGTTGTCAAGGCAACACGTCCCCCTGTACGGAGCGGTCGATCAGCGTCTGAGCGACTTCCTGCTAACACACCTACAATGTCCTCCACCCCGCCAGCCACCAGGAGCAACGTGGGCTTCTGGAACCAGTACCAAGCATTCCTCAACACTAGCAATGACCCGGCAGACGACCCAGCACAAGGCCCGACCAGTGGCAGCCAAGGAGAGGACGGGGAGATGCCCCGATTGGCTGAATCTCCTGTTAGATCCCAACTGTCAAAGGAGCCGACCACTGGGAGGGGCTCAGGTGAGGGATCTGATGAAGGGCCTACTCTAGAGTCAATGTGATTGGCTCTGTGATGCTCTGGTGCTCTCAATGTACATTCACTGTTCCTTTGGGTCAAATTGTATGGGCTTTTGTATTGTATTGCTTCCAAAATAATTTGAGTAGTCTGTCGGTTTGGTAGTACCTGAGTAAATTGCTTAGTTAGTTTGTGAAAACTGTAAGTTGGCCATCCTGGCCTTTTGTTTTAAAAGAGAAGGAAGCTGAAGGATGCAAAAAGATGACATGACTCCAGGATTGAGAGCTTGAGGAGGCCAGAAGTCACTGTCAAGATGATGAGAGTTGGAGCTGGTTTCTAGAATGAGAACTCTGTTAGACAGAGACCTCTGTTAGACAGAGAGCTCTGTTAGCTCTTCTTTAGCTAGTTTTAAAGGTCATTTTCCTGAACAGAGTCTGACTCCATGTTTATTTGATAGATAGAATCTCTAATAAAGACATGCATTGGAAAAGGAGGCAAGGTAGAGAGGAAGTAACACTGTTCACACATAAACCATTCCTTCATTCAATCATAAAAGGGTAAGGTAGGTGGAACAGATTGGGAGGGGTCACTAAACTAAACTCGTACAGCAGCTTCAACCCTGACAGCCTATGGAGATGCAGTCTCTCATCCTCAACCTGCTACTGTACAAAACCTAATCATTTATGTCATGGTGAATAACTCTAGATTACTCCAGACTCTTCTTCCAACTGATGGGCAGAGAAGCGCAGAGTAGAGGAGGTTGTGGTCTGCCAGGTAGAGACCCTTTCCTTTGGATCTTATGAATCAGCTGATTGTTGTTTGGTCTCACAGTGATGTCCGTTTTCTGTAACTCGTTGTCTTCGGTTCATGTTTGTGtctttacaacaacaacaaacaacaaaaaagAAAAGAATCAGAGGTGTACGTCTGATATTGTTGTGAGTTGTACTTTCAGTGTATGCCAGAGAATTaagattgataaaaaaaaaataaagaaacagcAACTGGGATGAA

Function

NR:

description
sal-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589023.2 True 5627 mRNA 0.57 4 10178396 10195465

Neighbor

gene id symbol gene type direction distance location
mmp14b LOC106600280 coding downstream 3553 10152976 ~ 10174843 (-)
dhrs1 dhrs1 coding downstream 101968 10068866 ~ 10076428 (-)
LOC118944863 NA coding downstream 118353 10058349 ~ 10060043 (-)
LOC110508478 LOC106600269 coding downstream 137365 10030793 ~ 10041031 (-)
LOC110508476 LOC106600265 coding downstream 170467 10004226 ~ 10007929 (-)
LOC110508487 NA coding upstream 41890 10237355 ~ 10244790 (-)
LOC110508490 LOC106600323 coding upstream 96546 10292011 ~ 10301368 (-)
LOC110508491 LOC106600322 coding upstream 106023 10301488 ~ 10306620 (-)
LOC110508492 LOC106600326 coding upstream 111246 10306711 ~ 10323084 (-)
LOC110508496 LOC106600349 coding upstream 191888 10387353 ~ 10414640 (-)
G2103229 NA non-coding downstream 2232 10175929 ~ 10176164 (-)
G2103153 NA non-coding downstream 155756 10022298 ~ 10022640 (-)
G2103148 NA non-coding downstream 160453 10017727 ~ 10017943 (-)
G2103127 NA non-coding downstream 204281 9968699 ~ 9974115 (-)
G2103255 NA non-coding upstream 10123 10205588 ~ 10205902 (-)
G2103625 NA non-coding upstream 14099 10209564 ~ 10209898 (-)
G2103627 NA non-coding upstream 16266 10211731 ~ 10211947 (-)
G2103639 NA non-coding upstream 26832 10222297 ~ 10222525 (-)
G2103647 NA non-coding upstream 35897 10231362 ~ 10231580 (-)
G2103203 LOC106600278 other downstream 62999 10113428 ~ 10115397 (-)
LOC110508473 LOC106600236 other downstream 366538 9739138 ~ 9883971 (-)
G2103015 NA other downstream 401488 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 609345 9567966 ~ 9569051 (-)
G2103257 NA other upstream 10598 10206063 ~ 10206676 (-)
G2103920 NA other upstream 512547 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 690733 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1303661 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 5344303 15539768 ~ 15554897 (-)

Expression


Co-expression Network