LOC110508490 (LOC106600323)


Basic Information

Item Value
gene id LOC110508490
gene name LOC106600323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10292011 ~ 10301368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589036.2
GGGAGCCTTGCTTTCACTTTTGAATGTTTGCACTATACAGTGAAGTACACACAGGCAAGGACCGAAAGCTGACTTTACAGCTGGCTACTATTTGAAACGGACATTTTGGAGCACCACCTACAGCAGTCAGGGGATACTTCATTTCCTTTTAACCTTATACTCCAATATTTGAACAGCAGGAAAGGGAGCAAGATGGACGAAGACTGTACCATTCCTCTGTCAAGCAAAACCCAGCTTGAGGTGTTGCTGACATGCCCAGTGTGCCATGACATATTTAAAGACCCGCACCAGCTGTCCTGTGGGCACAGCTACTGTATGGTGTGTCTGGAGGGCATAATAGACTTCGGTTCAAACATGCCCTTCCGCTGCCCAGACTGCAGGGCCTACTTTGGATCCACGATTGACGTCCAGAAGAGCTATACCCTGGCTAACATCGCAGAGGACTTCAGAGAAAACGTAAAGGCTAAGAAGACAGAGAGTGCATATTGTGACTGCTGTCCAGAGAAACAGAGCCTGGCAGTGAAGACGTGTCTGAAGTGTGAGGTGTCACTGTGTCAGGAGCATGTCCAGGATCACCTGCAACTCCCTGCCTACATGGGACACCCTCTGGTCAAACCCCTGGGGGACCTGAGCAGGAGGAGGTGCCCTGAGCATGACGATGAGGTGCTGAGGTACTACTGCTCCATGTCGAAAACCTACATCTGTAATATCTGTGCCATGGACAAGAAGCAGATGAACCTCACCGCTGACACCACCAACGTTCTGGGGAGAAAACTGACTGCATTTATGGAGCAGCAGTTCCAGGTGCTAGAGGGAAAGCTACAGGAATGCAAGGACTCTGTCAGCAAGTTGAAAGAAGACTTCAAAAACGAAAGGCAGAACTCTAATTCCAAAGACTCCCGCATTAACAGTGTAACTGTGGTGTTGCTGTGCCTCTGGTTCATTGTCCTTTATTATGCATATAGTTCCTCTCTGGAAAATCAAAACCTCACAGACACACTGAAGAAACAGGAGACTCTCTTGCACGATGTCTACTCCTCCGTGGCAGAATTCATAGTTGACAATCCACCAAAGGGCTACAGAAATGCAGACACCAGAGAAGCCCAACGTGCGCTGACTCTGGACGTAGACTCGGCCAGCCCTTTTCTCAAAGTGTCCATTGATCTCCAGTctgtggagagagtggaggacaaACTGTCCCTCCCCAGCCACCCCTCCCGCTTTGACAAAGCCCCCCAGGTTCTCACCACCCAGTGCTACTCCTCTGGGAGACATTACTGGGAGGTGGAGGTCAAGGGCTACTGGGACATCGCTGTGTCCTACCAGAGCATTAAGCGCAAGGGGACTGAGGGCCCTGTTTTTGGCCTCAACAAGGAATCCTGGAGCATCACACACAATGCAAAGGGAAATCTGTTTGCCTACCACAACAAGATGAAGAGGGAAATCGCCAATTCATTGAAAGGCAACAGAGTGACAGTGGTGGTAGACTTTGCGAAGGGAACCATCACTTTTTCTGAGGTGAATATCAACCTGATCAAGCTGCACCAGTTCAATGCTCAGCTCAGTCAGCCTGTGTGCCTGGGATTTGGCCTGTACCGCGTAGATCCTCCCAGTAGAGTCGCCATTATAAAGACCCAGTAGTGGCCCTCCACGGCACACTCATCACAAAGCACTGGACTGTAGAGAATAACCAAGTATTGTCTCTGCTGAAACAAATATGTAAATGTTTTACTACAACTCCCGTTGTCTCAGGTTTCTATTATACAAATAATGTTGACATGATTCTATTGCATCTTGATTAAATAAGTTTAAATGATTGTTTTACCTGATGTGTCCAacgtattttttaaatatatttttttacattatagtcgtttagcagacgctcttatccacagcgacttacagttagtgtatTAATCTTAGGATAGCTAGGTGGGACTACCACATCAGTCATAGTAGGTAAATTTTTTCTCTCAAAGTAGCTATCAGCGAAGTCTGTGctagtagtaaaaaaaaaaatggctctattcaatccgcatggcggaagttcagctttacagcTTGATTGCAGTTTAAAGGCAAAGTTCCGCTTTAGCTAGCGGAGACCCCATTCAAGATAAACGTGCCATTTGTCAGTTCAATCTGAAATGACCTTTACATGTCTATCACGGAATCTGTAACTCTTTAGCTTTACAGATTGAAGTCAAGTGAAGTTAAAATAAAAACCTTACCTAATGTA
>XM_021589034.2
AAGTGGCTCCAATGACAGTTGAGTCTAGCCCCGCCTCCAAAGGAAGTATACACAGGGAGCCTTGCTTTCACTTTTGAATGTTTGCACTATACAGTGAAGTACACACAGGCAAGGACCGAAAGCTGACTTTACAGCAGGAAAGGGAGCAAGATGGACGAAGACTGTACCATTCCTCTGTCAAGCAAAACCCAGCTTGAGGTGTTGCTGACATGCCCAGTGTGCCATGACATATTTAAAGACCCGCACCAGCTGTCCTGTGGGCACAGCTACTGTATGGTGTGTCTGGAGGGCATAATAGACTTCGGTTCAAACATGCCCTTCCGCTGCCCAGACTGCAGGGCCTACTTTGGATCCACGATTGACGTCCAGAAGAGCTATACCCTGGCTAACATCGCAGAGGACTTCAGAGAAAACGTAAAGGCTAAGAAGACAGAGAGTGCATATTGTGACTGCTGTCCAGAGAAACAGAGCCTGGCAGTGAAGACGTGTCTGAAGTGTGAGGTGTCACTGTGTCAGGAGCATGTCCAGGATCACCTGCAACTCCCTGCCTACATGGGACACCCTCTGGTCAAACCCCTGGGGGACCTGAGCAGGAGGAGGTGCCCTGAGCATGACGATGAGGTGCTGAGGTACTACTGCTCCATGTCGAAAACCTACATCTGTAATATCTGTGCCATGGACAAGAAGCAGATGAACCTCACCGCTGACACCACCAACGTTCTGGGGAGAAAACTGACTGCATTTATGGAGCAGCAGTTCCAGGTGCTAGAGGGAAAGCTACAGGAATGCAAGGACTCTGTCAGCAAGTTGAAAGAAGACTTCAAAAACGAAAGGCAGAACTCTAATTCCAAAGACTCCCGCATTAACAGTGTAACTGTGGTGTTGCTGTGCCTCTGGTTCATTGTCCTTTATTATGCATATAGTTCCTCTCTGGAAAATCAAAACCTCACAGACACACTGAAGAAACAGGAGACTCTCTTGCACGATGTCTACTCCTCCGTGGCAGAATTCATAGTTGACAATCCACCAAAGGGCTACAGAAATGCAGACACCAGAGAAGCCCAACGTGCGCTGACTCTGGACGTAGACTCGGCCAGCCCTTTTCTCAAAGTGTCCATTGATCTCCAGTctgtggagagagtggaggacaaACTGTCCCTCCCCAGCCACCCCTCCCGCTTTGACAAAGCCCCCCAGGTTCTCACCACCCAGTGCTACTCCTCTGGGAGACATTACTGGGAGGTGGAGGTCAAGGGCTACTGGGACATCGCTGTGTCCTACCAGAGCATTAAGCGCAAGGGGACTGAGGGCCCTGTTTTTGGCCTCAACAAGGAATCCTGGAGCATCACACACAATGCAAAGGGAAATCTGTTTGCCTACCACAACAAGATGAAGAGGGAAATCGCCAATTCATTGAAAGGCAACAGAGTGACAGTGGTGGTAGACTTTGCGAAGGGAACCATCACTTTTTCTGAGGTGAATATCAACCTGATCAAGCTGCACCAGTTCAATGCTCAGCTCAGTCAGCCTGTGTGCCTGGGATTTGGCCTGTACCGCGTAGATCCTCCCAGTAGAGTCGCCATTATAAAGACCCAGTAGTGGCCCTCCACGGCACACTCATCACAAAGCACTGGACTGTAGAGAATAACCAAGTATTGTCTCTGCTGAAACAAATATGTAAATGTTTTACTACAACTCCCGTTGTCTCAGGTTTCTATTATACAAATAATGTTGACATGATTCTATTGCATCTTGATTAAATAAGTTTAAATGATTGTTTTACCTGATGTGTCCAacgtattttttaaatatatttttttacattatagtcgtttagcagacgctcttatccacagcgacttacagttagtgtatTAATCTTAGGATAGCTAGGTGGGACTACCACATCAGTCATAGTAGGTAAATTTTTTCTCTCAAAGTAGCTATCAGCGAAGTCTGTGctagtagtaaaaaaaaaaatggctctattcaatccgcatggcggaagttcagctttacagcTTGATTGCAGTTTAAAGGCAAAGTTCCGCTTTAGCTAGCGGAGACCCCATTCAAGATAAACGTGCCATTTGTCAGTTCAATCTGAAATGACCTTTACATGTCTATCACGGAATCTGTAACTCTTTAGCTTTACAGATTGAAGTCAAGTGAAGTTAAAATAAAAACCTTACCTAATGTA
>XM_021589037.2
AAGTGGCTCCAATGACAGTTGAGTCTAGCCCCGCCTCCAAAGGAAGTATACACAGGGAGCCTTGCTTTCACTTTTGAATGTTTGCACTATACAGTGAAGTACACACAGGCAAGGACCGAAAGCTGACTTTACAGCAGGAAAGGGAGCAAGATGGACGAAGACTGTACCATTCCTCTGTCAAGCAAAACCCAGCTTGAGGTGTTGCTGACATGCCCAGTGTGCCATGACATATTTAAAGACCCGCACCAGCTGTCCTGTGGGCACAGCTACTGTATGGTGTGTCTGGAGGGCATAATAGACTTCGGTTCAAACATGCCCTTCCGCTGCCCAGACTGCAGGGCCTACTTTGGATCCACGATTGACGTCCAGAAGAGCTATACCCTGGCTAACATCGCAGAGGACTTCAGAGAAAACGCTAAGAAGACAGAGAGTGCATATTGTGACTGCTGTCCAGAGAAACAGAGCCTGGCAGTGAAGACGTGTCTGAAGTGTGAGGTGTCACTGTGTCAGGAGCATGTCCAGGATCACCTGCAACTCCCTGCCTACATGGGACACCCTCTGGTCAAACCCCTGGGGGACCTGAGCAGGAGGAGGTGCCCTGAGCATGACGATGAGGTGCTGAGGTACTACTGCTCCATGTCGAAAACCTACATCTGTAATATCTGTGCCATGGACAAGAAGCAGATGAACCTCACCGCTGACACCACCAACGTTCTGGGGAGAAAACTGACTGCATTTATGGAGCAGCAGTTCCAGGTGCTAGAGGGAAAGCTACAGGAATGCAAGGACTCTGTCAGCAAGTTGAAAGAAGACTTCAAAAACGAAAGGCAGAACTCTAATTCCAAAGACTCCCGCATTAACAGTGTAACTGTGGTGTTGCTGTGCCTCTGGTTCATTGTCCTTTATTATGCATATAGTTCCTCTCTGGAAAATCAAAACCTCACAGACACACTGAAGAAACAGGAGACTCTCTTGCACGATGTCTACTCCTCCGTGGCAGAATTCATAGTTGACAATCCACCAAAGGGCTACAGAAATGCAGACACCAGAGAAGCCCAACGTGCGCTGACTCTGGACGTAGACTCGGCCAGCCCTTTTCTCAAAGTGTCCATTGATCTCCAGTctgtggagagagtggaggacaaACTGTCCCTCCCCAGCCACCCCTCCCGCTTTGACAAAGCCCCCCAGGTTCTCACCACCCAGTGCTACTCCTCTGGGAGACATTACTGGGAGGTGGAGGTCAAGGGCTACTGGGACATCGCTGTGTCCTACCAGAGCATTAAGCGCAAGGGGACTGAGGGCCCTGTTTTTGGCCTCAACAAGGAATCCTGGAGCATCACACACAATGCAAAGGGAAATCTGTTTGCCTACCACAACAAGATGAAGAGGGAAATCGCCAATTCATTGAAAGGCAACAGAGTGACAGTGGTGGTAGACTTTGCGAAGGGAACCATCACTTTTTCTGAGGTGAATATCAACCTGATCAAGCTGCACCAGTTCAATGCTCAGCTCAGTCAGCCTGTGTGCCTGGGATTTGGCCTGTACCGCGTAGATCCTCCCAGTAGAGTCGCCATTATAAAGACCCAGTAGTGGCCCTCCACGGCACACTCATCACAAAGCACTGGACTGTAGAGAATAACCAAGTATTGTCTCTGCTGAAACAAATATGTAAATGTTTTACTACAACTCCCGTTGTCTCAGGTTTCTATTATACAAATAATGTTGACATGATTCTATTGCATCTTGATTAAATAAGTTTAAATGATTGTTTTACCTGATGTGTCCAacgtattttttaaatatatttttttacattatagtcgtttagcagacgctcttatccacagcgacttacagttagtgtatTAATCTTAGGATAGCTAGGTGGGACTACCACATCAGTCATAGTAGGTAAATTTTTTCTCTCAAAGTAGCTATCAGCGAAGTCTGTGctagtagtaaaaaaaaaaatggctctattcaatccgcatggcggaagttcagctttacagcTTGATTGCAGTTTAAAGGCAAAGTTCCGCTTTAGCTAGCGGAGACCCCATTCAAGATAAACGTGCCATTTGTCAGTTCAATCTGAAATGACCTTTACATGTCTATCACGGAATCTGTAACTCTTTAGCTTTACAGATTGAAGTCAAGTGAAGTTAAAATAAAAACCTTACCTAATGTA
>XM_021589035.2
GAAGTGGCTCCAATGACAGTTGAGTCTAGCCCCGCCTCCAAAGGAAGTATACACAGGGAGCCTTGCTTTCACTTTTGAATGTTTGCACTATACAGTGAAGTACACACAGGCAAGGACCGAAAGCTGACTTTACAGGAAAGGGAGCAAGATGGACGAAGACTGTACCATTCCTCTGTCAAGCAAAACCCAGCTTGAGGTGTTGCTGACATGCCCAGTGTGCCATGACATATTTAAAGACCCGCACCAGCTGTCCTGTGGGCACAGCTACTGTATGGTGTGTCTGGAGGGCATAATAGACTTCGGTTCAAACATGCCCTTCCGCTGCCCAGACTGCAGGGCCTACTTTGGATCCACGATTGACGTCCAGAAGAGCTATACCCTGGCTAACATCGCAGAGGACTTCAGAGAAAACGTAAAGGCTAAGAAGACAGAGAGTGCATATTGTGACTGCTGTCCAGAGAAACAGAGCCTGGCAGTGAAGACGTGTCTGAAGTGTGAGGTGTCACTGTGTCAGGAGCATGTCCAGGATCACCTGCAACTCCCTGCCTACATGGGACACCCTCTGGTCAAACCCCTGGGGGACCTGAGCAGGAGGAGGTGCCCTGAGCATGACGATGAGGTGCTGAGGTACTACTGCTCCATGTCGAAAACCTACATCTGTAATATCTGTGCCATGGACAAGAAGCAGATGAACCTCACCGCTGACACCACCAACGTTCTGGGGAGAAAACTGACTGCATTTATGGAGCAGCAGTTCCAGGTGCTAGAGGGAAAGCTACAGGAATGCAAGGACTCTGTCAGCAAGTTGAAAGAAGACTTCAAAAACGAAAGGCAGAACTCTAATTCCAAAGACTCCCGCATTAACAGTGTAACTGTGGTGTTGCTGTGCCTCTGGTTCATTGTCCTTTATTATGCATATAGTTCCTCTCTGGAAAATCAAAACCTCACAGACACACTGAAGAAACAGGAGACTCTCTTGCACGATGTCTACTCCTCCGTGGCAGAATTCATAGTTGACAATCCACCAAAGGGCTACAGAAATGCAGACACCAGAGAAGCCCAACGTGCGCTGACTCTGGACGTAGACTCGGCCAGCCCTTTTCTCAAAGTGTCCATTGATCTCCAGTctgtggagagagtggaggacaaACTGTCCCTCCCCAGCCACCCCTCCCGCTTTGACAAAGCCCCCCAGGTTCTCACCACCCAGTGCTACTCCTCTGGGAGACATTACTGGGAGGTGGAGGTCAAGGGCTACTGGGACATCGCTGTGTCCTACCAGAGCATTAAGCGCAAGGGGACTGAGGGCCCTGTTTTTGGCCTCAACAAGGAATCCTGGAGCATCACACACAATGCAAAGGGAAATCTGTTTGCCTACCACAACAAGATGAAGAGGGAAATCGCCAATTCATTGAAAGGCAACAGAGTGACAGTGGTGGTAGACTTTGCGAAGGGAACCATCACTTTTTCTGAGGTGAATATCAACCTGATCAAGCTGCACCAGTTCAATGCTCAGCTCAGTCAGCCTGTGTGCCTGGGATTTGGCCTGTACCGCGTAGATCCTCCCAGTAGAGTCGCCATTATAAAGACCCAGTAGTGGCCCTCCACGGCACACTCATCACAAAGCACTGGACTGTAGAGAATAACCAAGTATTGTCTCTGCTGAAACAAATATGTAAATGTTTTACTACAACTCCCGTTGTCTCAGGTTTCTATTATACAAATAATGTTGACATGATTCTATTGCATCTTGATTAAATAAGTTTAAATGATTGTTTTACCTGATGTGTCCAacgtattttttaaatatatttttttacattatagtcgtttagcagacgctcttatccacagcgacttacagttagtgtatTAATCTTAGGATAGCTAGGTGGGACTACCACATCAGTCATAGTAGGTAAATTTTTTCTCTCAAAGTAGCTATCAGCGAAGTCTGTGctagtagtaaaaaaaaaaatggctctattcaatccgcatggcggaagttcagctttacagcTTGATTGCAGTTTAAAGGCAAAGTTCCGCTTTAGCTAGCGGAGACCCCATTCAAGATAAACGTGCCATTTGTCAGTTCAATCTGAAATGACCTTTACATGTCTATCACGGAATCTGTAACTCTTTAGCTTTACAGATTGAAGTCAAGTGAAGTTAAAATAAAAACCTTACCTAATGTA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589036.2 False 2242 mRNA 0.46 8 10292011 10301313
XM_021589034.2 False 2200 mRNA 0.47 8 10292011 10301367
XM_021589037.2 False 2194 mRNA 0.47 8 10292011 10301367
XM_021589035.2 True 2198 mRNA 0.47 8 10292011 10301368

Neighbor

gene id symbol gene type direction distance location
LOC110508487 NA coding downstream 47221 10237355 ~ 10244790 (-)
LOC110508484 LOC106600289 coding downstream 96546 10178396 ~ 10195465 (-)
mmp14b LOC106600280 coding downstream 117168 10152976 ~ 10174843 (-)
dhrs1 dhrs1 coding downstream 215583 10068866 ~ 10076428 (-)
LOC118944863 NA coding downstream 231968 10058349 ~ 10060043 (-)
LOC110508491 LOC106600322 coding upstream 120 10301488 ~ 10306620 (-)
LOC110508492 LOC106600326 coding upstream 5343 10306711 ~ 10323084 (-)
LOC110508496 LOC106600349 coding upstream 85985 10387353 ~ 10414640 (-)
LOC110508497 LOC106600370 coding upstream 117159 10418527 ~ 10463830 (-)
LOC110508159 LOC106600382 coding upstream 203346 10504714 ~ 10508349 (-)
G2103629 LOC106569449 non-coding downstream 4131 10285253 ~ 10287880 (-)
G2103649 NA non-coding downstream 58935 10232818 ~ 10233076 (-)
G2103647 NA non-coding downstream 60431 10231362 ~ 10231580 (-)
G2103639 NA non-coding downstream 69486 10222297 ~ 10222525 (-)
G2103627 NA non-coding downstream 80064 10211731 ~ 10211947 (-)
G2103695 NA non-coding upstream 23590 10324958 ~ 10325299 (-)
G2103707 NA non-coding upstream 30292 10331660 ~ 10339065 (-)
G2103696 LOC106600329 non-coding upstream 40213 10341581 ~ 10385478 (-)
G2103735 NA non-coding upstream 84871 10386239 ~ 10386822 (-)
G2103736 NA non-coding upstream 95417 10396785 ~ 10397069 (-)
G2103257 NA other downstream 85335 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 176614 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 284108 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 480153 9739138 ~ 9883971 (-)
G2103015 NA other downstream 515103 9776619 ~ 9776908 (-)
G2103920 NA other upstream 406644 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 584830 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1197758 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 5238400 15539768 ~ 15554897 (-)
G2109705 NA other upstream 5302317 15603685 ~ 15604463 (-)

Expression


Co-expression Network