LOC110508492 (LOC106600326)


Basic Information

Item Value
gene id LOC110508492
gene name LOC106600326
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10306711 ~ 10323084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966100.1
CAGGGGGTTTAATAAGGGGGGCTCAGGAGTTGGTCTTGCTCTGTTCTGGGTGGTGGGGATTGGACGTCCTTCCTCATTTTTatcaaattatttatttatttattcttttttttaactCATTGAAACTACATTAATTCCCAAATAAGTAAGGAAACATGAATTGGAGCTGGGTGGTTGTGGCAGTCCTTCTGTCTTGCGGGGGACCGTCATGGGGTGAGGAGGGTTTGGACTTCCCTGAGTACGATGGCACGGACCGGGTCATCGAGCTGACTGCCAAGAACTACAAGTCTGAGATGAAGAAGTATGATGTGATGGTTCTGTACTACCATGAGCATCCCGGAACAGACACCGTTTCCCAGAAACAGTTTGAGATCGAGGAGCTGGCCCTAGAGCTTGCAGCTCAGGTCCTTGACGACCTTGACGATGAGGAAATTGGATTCTGCCTTGTTGATGAAAAGAAGGGCAGTATTGTTGCTAAGAAACTAGGACTGGAGGAGGTTGACAGCATCTATATCTTCACCGAGGACGAGATCATTGAGTACGATGGGGAGCTTGCTGCAGACACAATTGTGGAGTTCATATTTGATGTTCTTGAAGACCCCGTTGAGATCATTGAGAAAGATGGAGAAGTTAAAGGTTTCCACAACAATGAGGAGGACATCAAACTGGTGGGCTACTTTAAGAGTGAAAAGTCCGAACATTATTTGGCCTATGTGGACGCGGCTGAGGAGTTCCATCCACACATCAAGTTCTTTGCTACATTCACTCCCAAGGTTGCCAAAGATCTGGGCCTGAAGGTGAATGAAGTGGACTTCTATGAGCCCTTCATAGATGAACCCATAGTCATCCCTGGAAAACCCTACACAGAGGAGGAACTTGTTGCATACATTGAGGATCACGACAGACCAACCATGAGGAAGATGGAACCAGATAACATGTATGAGATCTGGGAGGACGACATCGATGGCGAGCACATCATTGCATTTGCAGAGGAGGATGACCCAGACGGTTTTGAGTTTCTGGAAATCCTGAAGGAAGTAGCAGAGGAGCACAATGATAATCCCAACCTCAGCATTGTCTGGATTGACCCAGATGATTTCCCCCTGCTTGTCCCATACTGGGAGAAGACCTTTGGAATTGACCTGGGCTCTCCCCAGATTGGTGTTGTGGATGTTGAAGATgCTGACAGTGTATGGATGGAAATCGACGATGATGACGACCTGCCAAGCGCAGATGAGCTTGAGGAATGGATCGAAGATGTTCTGTCCGATGAAATTGATCCAGATGATGATGACgacgatgatgatgacgatgatgatgatgatgatgatgatgatgatgacgatgatgatgatgacgacgacGATGACGACgacgatgatgacgatgatgatgatgatgacgacgacGAGGATGACgacgatgacgatgatgatgatgatgatgagtaaATTGTTGATGTCATCAATGTATAAATCTGGCCAATATATCATAATCTGGCCAATCAACATCATCACCTTCCTCAAATCTTCCTTGTTCTCTGTTGAAATAAGTCATTAGGTTAAATCTGTCAGCTCTTATGGACATCTTCATGTTTTCAACATCCTCACTCAGAGCATCTTTCAAAAAGATTGTTCTATTTCCCAAGCTATCCTAAACTCCCTTTGCTTTGAATTCATAAAATACAGTACTTTCTCAAAGTCCCAGTCAATTTTTTATTCACACCTGTAACTTTGCCATCAGTACAATATGAAAAGGGAAAACATAAAACATTGATTTAGAAAATAATATTTTCACAACTGAATTATTGGATATTCACTAGCACTTACCCTAAAAACACCTAATGCTTCTGATTTTATATTTCAGACAAATAGAAGGGTTAACTCTGCATTTTAAGTCTAAGGCCATCTGTAAACTTGTTGTTtggatgtattttatttttgttttatttctctGGAATAAATGTTCGCCCCTCTCCCAACTTGTAAAATCCAAGGGTGCAAGCCGGCTTTTCCTGCAGGTCAAAGGTCATACCAGCCTACTCAGTTAAATTATTGTAACTTTACTTGAAAAGGGCGGTTAGCTTTTTTTCTTCTTGTGCACTGAAAAGTGCTGTAAATCACATGGATGTTTTCTACTGATAAAGAAATATAACAACAACAGTAttctatttttttaaacaagaaaaCTTAAACATACTGTAAAGTCTTAAAATAAATGACAGCTTggaaaaatatacaaaaatgacTGGTGTTCTGGATTCTTGTGCGCATGTGTGCTCTTGtgtgcgagagagacagagagaataaaccGTCATTTCTATTATTTGTCATGCATTGAAACTGTACCATAAAACGATAAAAGATCAAAGCAA

Function

NR:

description
calsequestrin-1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23468 CASQ1; calsequestrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966100.1 True 2374 mRNA 0.41 11 10306711 10323084

Neighbor

gene id symbol gene type direction distance location
LOC110508491 LOC106600322 coding downstream 91 10301488 ~ 10306620 (-)
LOC110508490 LOC106600323 coding downstream 5343 10292011 ~ 10301368 (-)
LOC110508487 NA coding downstream 61921 10237355 ~ 10244790 (-)
LOC110508484 LOC106600289 coding downstream 111246 10178396 ~ 10195465 (-)
mmp14b LOC106600280 coding downstream 131868 10152976 ~ 10174843 (-)
LOC110508496 LOC106600349 coding upstream 64269 10387353 ~ 10414640 (-)
LOC110508497 LOC106600370 coding upstream 95443 10418527 ~ 10463830 (-)
LOC110508159 LOC106600382 coding upstream 181630 10504714 ~ 10508349 (-)
LOC110508501 LOC106600384 coding upstream 211942 10535026 ~ 10540345 (-)
LOC110508509 LOC106600390 coding upstream 354718 10677802 ~ 10681747 (-)
G2103629 LOC106569449 non-coding downstream 18831 10285253 ~ 10287880 (-)
G2103649 NA non-coding downstream 73635 10232818 ~ 10233076 (-)
G2103647 NA non-coding downstream 75131 10231362 ~ 10231580 (-)
G2103639 NA non-coding downstream 84186 10222297 ~ 10222525 (-)
G2103627 NA non-coding downstream 94764 10211731 ~ 10211947 (-)
G2103695 NA non-coding upstream 1874 10324958 ~ 10325299 (-)
G2103707 NA non-coding upstream 8576 10331660 ~ 10339065 (-)
G2103696 LOC106600329 non-coding upstream 18497 10341581 ~ 10385478 (-)
G2103735 NA non-coding upstream 63155 10386239 ~ 10386822 (-)
G2103736 NA non-coding upstream 73701 10396785 ~ 10397069 (-)
G2103257 NA other downstream 100035 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 191314 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 298808 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 494853 9739138 ~ 9883971 (-)
G2103015 NA other downstream 529803 9776619 ~ 9776908 (-)
G2103920 NA other upstream 384928 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 563114 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1176042 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 5216684 15539768 ~ 15554897 (-)
G2109705 NA other upstream 5280601 15603685 ~ 15604463 (-)

Expression


Co-expression Network