LOC110508500 (LOC106600383)


Basic Information

Item Value
gene id LOC110508500
gene name LOC106600383
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10510527 ~ 10524470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589057.2
CCAGCCAAACATCTGGCTCAAGAGGGCCAGTTCATTACTTGTATTACACTCGAGTTGATGCCATTTAAAAAGTTTGGTGATGGGGGAGGCAGAAAACGCCTGGAAATACAAGGATGTGATGTCAAACTGTCAGAGGAAATGTATGCaataatctacagtatatgcCACATAACTGATTAATTATTCATAAGAACTTGGTAAAAAATCTCAAAGCAAGCAAACCTCCTCAGCTCATGGACataggcagggggagaggggagggggtctCCTTGACTGACAACCCAAATGTCCTATGGAATTCCAGTAACGGTCCAACTGTGCTGAGAAACCCACCCAAAGGCAATTAAGGGTAAAGTACTACAAAAATATTTGATACACTTTTTTTTCTGGTCGAATAGAAGAAAGGATGGCGAGAGAGCAATAGAATGAAACACTGATAGCCTGTGATGGAATAGATAGATAACGGTCCGATCGTTTGCGAATTTCAAAGAACTCAACGATATAGGCTAGCCTACGCATAACATTTGTCTTCTCCAAAACTTCGAATGAAATAGATGAAGCGGTGGTCCAAAAATATGTCTTATCGGCGGAAGACATTGTAAAAAGTTACAGAGAGAGTTTCTGAGCAAGAACGACCACAATAACGAATGTTGGACCTACCCTTGAACGTATACATTTTGCGAAAACGtcgatgtttttttttttaaaagaccaaggaaagtattattattattggatcaCACTTAGGTAGATCTCAATCTTTTCAGCCAGGGTGTTCTCTTCATCAGTCTCTCTGATTTATTCCGCGTGCTGAGGGGATGGGGGCCGCGCCGGGTTCGGGCTGGGAGGAGGGGGAGTTCGAGTTCAAGTTGGTTTTTGAGGAGGACCCGCCGCGCCAACTCCGGGGCCCATCCCCGCTGCGCAACGCGGACCAGGAGCACACCGTCgcaggggagaggacagagagctcCCTGTCGCTCCCAACGTCGAGCAATACTGACAGCCACCTGGCGGCCACTCATGTAGGCCAGCCAATCGGCATCCCTACCCCACCGTCTTCTTCAGCCAGTCAAAGGGCTGGGATGCATTCCCCGCCCCCCAGGCGTGCCTTGGTGAGGGAGTTCAGCGGGACTTATGAGAGTCTTCCAGCGCGATCTGTACAAgtctCAGAGTCCCGTGTGTTGGAGTGCCCTAGCATCCAGATCACTACTATCTCTCCAGAGGATGACACTGCCCCAGCAGGAAGTAACTACTGGGACACAGGaggtggctgggagagggagcgCCTCTACCTCCCCTTACTGGACCCATTCTGCTACCGCGACGGCGGCACCGGCACTGGGTCCCTGAGCCCAAGCCCGGCCTCCAGCCCCTCTTCTCGTGGCTGGCTCAGTCCTGCGTCCAGCTGTGATTCGCTgctagtagaggaggaggatctCAATGAGGTCACTTCCCATTTCTGCCTGTCGCCCTCCTCCCGGCCAACCTCCCCGGGGGGTAAGAAGCGCAGGAACTCCCCCCTGGCCTCCCCCTGCACCTCCCGCAGGAGCAGCTACTCTGAGGACCACTCCTGTAACCAGGAGGAAGGAGACTCCACCTCTCAGTCACAGGGTCCCAACAGCAGCTTTGAGCTGAGCATCCCACAGAAGACCAGGAAGACGTCACTGGAGCAGGTTTCCCCCAGGGAGGTGGAGCAAGTGCAGGCTCCAGCCCATAGCTCCCACTGCCCACTCCCAGAGCCGCTGCAGCAGAGGAGAGAGGCCCCTTCCATGGGCATGGACTACCTGTCTGTGCCCCCTGCTCTGGGCTGGGGGAGGACCAGAGCCAGCGCCCACAGCCCTCTGTTCAGATCCAATGCTCTGCCACCACTTGATTGGCCTCTGCCAACTCAGTTTGACCAATATGAACTGCGTATCGAGGTGCAGCCCCGCCCACACCACCGAGCCCACTACGAGACGGAGGGAAGCAGAGGAGCCGTCAAGGCATCACCAGGGGGACATCCGGTTGTTAAGCTGACTgggtacacagagagacagccgcTCTCTTTGCAGGTGTTTGTGGGAACAGCTGATGACAGGTCCATCCGGCCTCATCCTTTCTATCAGATTCACAGGGTGACAGGGAAGATGGTGGGCACTGCCAGCCAGGAGAGCGTCCAAGCTGGCACCAAAATACTGGACATCCCCCTCAACCCAGATACCAACATGACTGCGCTCATTGACTGTGCTGGCATTCTGAAGCTGAGGAACTCGGACATCGAGCTGAGGAAAGGAGAGACGGACGTAGGGAGGAAGAACACGCGTGTGCGCCTCGTGTTCCGTACCCACCTCCACCTGGCCCCTCACGTGGCCCCGCCTGGACGGGTGCTGGCCCTGCAGGTCGCCTCCCTTCCTATAGAGTGCTCCCAGCGCTCTGCTCAGGAGCTGCCAGTGGTGGAGTCGGTCAGTCTTACATCCTGCTCtgtggaaggaggggaggagctACTGTTGGGTGGGTCTAACTTCCTGCCCATGTCCAGAGTGCTTTTTATGGAAAGAGGGACAGATGGAAAGCTACAGTGGGAAGAGGAGGCACATGTTGACCGTGACAACAGTAGTGAGTGCTTGCTGTGTGTGCGAGTTCCAGCCTATAGCGACCTCTCAGTGAGCCGCCCAGTATCTGTGTGCCTTTACGTCTCCAACGGGAAGAGAAAAAGGAGCAGCACTCACTGTTTCAAGTACCTGCCGGTCATGTTTAAAGAGGAGGACCCTCTGCTGTCGCATCCCTCTGCCTTGCCCCTGGAGGGGGTGACACTCTGCTCCATGAGGGGGCCCAGCAGGGTGGACAGCGGTGTGCACCGGGGGAATGATCCCATGCTCGAGGAGGGAGGACTGGCCTTCCACCTTCCCCCCTACCCTTCAGCCTGCTCTCCCCCCTACCCCGGCCAGAGCTACCAGGAGTACTGCCACAAGCCGGAAGCTGTGGAGGAGAGCAGAGGTTCTCTGTCGGAGAGACACCCCAGCTTTGAGAACTTGGAGCTGGGCTTCACTGAGCTACTGCCTCCCTTTTACCCCAGAGTCCCCcagcctccctccccctccccttggCTGGACTCCCCATACCTgtcttcttccccctctccctcccactcctcctctctgagTCCCTTCCCCTCCAGcagccccatctcctcctcccctcgtCCCCCCATGACTACCTCTCCCTTCCCCCACTACCCCTACCCTCATGAGGTCTGCCCCTCGCCTCCTTCCAACCCTAGCCCGTATCAGGACTTCTACCCACCACCGTACTCCCACTATGAGGTATGGGACCACCAGGGCAGGGGACCTGGGGAAAGGGAAGCTCAGGCTGGACCTAAAATGCAGGAGAGCCCCCTGGAATTTGCCAGCTCATCATCCTTTCACCACATTACATTAGAGGAAGTGAATGAATTCATAGGAGAAGACATCAGATCCTTCCATTCGGGCTCACAGATGGACAGCCAACCGGGATGACAAGCTCCGTACTGTCCTGTCTTGTTCTGTTTTTATAGTATGAAGTGCGTTATTGATATCATATCACACCTTTTCCTATGCACTTGGTTTCTGACGTATTGCTCAAGTATGACAATACTGAATGGGGATTAAATAAAAGGGCACGGTTGTAAGTATGATCGAAGGTCActgttacagtttatataagggaGACTAATGTTTTTAACCTGTTTTCAATATAAATTATACAAGTAAATGTCTGTTATGGGTCTGTTTGTGTATATAGCTttagtgtgcttgtgtgtgcttgAATAGATTGCCATTCTCTCCACCTGGGAGTCTAATATCTGTTATCACTGGAGCAAAATAAATTTAGCTCTGTCCAAAGCCCCTTGGTTGAGTGGCCCGAGTGAATACAGTCTGGACAGTATGGAGGAGGGTAATTGTTTCAGAGACGCTCTAGAAGGACAGATCTCCAGCCCTGTGATCCAGGTACACCCCTACCCTACAGGACTCAGGGCCAGGGGCAGGTAGTTTAGTCTCTATGTTGTTATGTAGGAAACTACAGGCTTCTTTGGTGCAAAGTAAACCCCAGTACGTATCATTGAGGCCAAACTGGGCTTCTGGACCAAAGCCCATCCTGCTGACGTTGTTGTAAGAGACTGCTATGTAGGCCTTCTTCCCTctccactctacctcccagtTAAAGTGGGCCCCAGACAGACCATTCTTACACAGCACCTGGAGAATGTGGAACCTCTCTGGATGGTTGAGGCACAGTTTGGGTCCCTTCATTGTCACTTCCTGGTCTCCCTCAGTCAGGTGGAGGTTGTAGAAGACTGTGTTTGGGTTTAGTGTGAGCTGACAGgaatctgtggagagagaggagagggagaaaacagAGCAGATATAATTAGGATGTGTGATTGGTGTAGAATAGACCTTACCTTGTGCGATAACATAAATGTACAGTCGTGGctaaacgttttgagaatgacacaaatatacattttcacatagTCTggtgcctcagtttgtatgatggacatttgcatatac
>TU2405871
TCAGTCTTACATCCTGCTCtgtggaaggaggggaggagctACTGTTGGGTGGGTCTAACTTCCTGCCCATGTCCAGAGTGCTTTTTATGGAAAGAGGGACAGATGGAAAGCTACAGTGGGAAGAGGAGGCACATGTTGACCGTGACAACAGTAGTGAGTGCTTGCTGTGTGTGCGAGTTCCAGCCTATAGCGACCTCTCAGTGAGCCGCCCAGTATCTGTGTGCCTTTACGTCTCCAACGGGAAGAGAAAAAGGAGCAGCACTCACTGTTTCAAGTACCTGCCGGTCATGTTTAAAGAGGAGGACCCTCTGCTGTCGCATCCCTCTGCCTTGCCCCTGGAGGGGGTGACACTCTGCTCCATGAGGGGGCCCAGCAGGGTGGACAGCGGTGTGCACCGGGGGAATGATCCCATGCTCGA
>TU2405872
CCTCGCCTCCTTCCAACCCTAGCCCGTATCAGGACTTCTACCCACCACCGTACTCCCACTATGAGGTATGGGACCACCAGGGCAGGGGACCTGGGGAAAGGGAAGCTCAGGCTGGACCTAAAATGCAGGAGAGCCCCCTGGAATTTGCCAGCTCATCATCCTTTCACCACATTACATTAGAGGAAGTGAATGAATTCATAGGAGAAGACATCAGATCCTTCCATTCGGGCTCACAGATGGACAGCCAACCGGGATGACAAGCTCCGTACTGTCCTGTCTTGTTCTGTTTTTATAGTATGAAGTGCGTTATTGATATCATATCACACCTTTTCCTATGCACTTGGTTTCTGACGTATTGCTCAAGTATGACAATACTGAATGGGGATTAAATAAAAGGGCACGGTTGTAAGTATGATCGAAGGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589057.2 False 4532 mRNA 0.53 13 10510527 10524470
TU2405871 False 418 TUCP 0.56 4 10521731 10522638
TU2405872 True 425 lncRNA 0.48 2 10523016 10523600

Neighbor

gene id symbol gene type direction distance location
LOC110508499 LOC106600378 coding upstream 23498 10467328 ~ 10487029 (+)
LOC110508495 LOC106600345 coding upstream 125033 10362934 ~ 10385494 (+)
LOC110508493 LOC106600329 coding upstream 162336 10326728 ~ 10348191 (+)
tox4a LOC106600314 coding upstream 219218 10282905 ~ 10291309 (+)
chd8 LOC106600304 coding upstream 228886 10252736 ~ 10281641 (+)
LOC110508502 LOC106600385 coding downstream 27843 10552313 ~ 10558506 (+)
LOC110508503 LOC106600386 coding downstream 39735 10564205 ~ 10588319 (+)
ncstn ncstn coding downstream 76968 10601438 ~ 10619730 (+)
LOC110508506 LOC106600389 coding downstream 128589 10653059 ~ 10668838 (+)
LOC110508505 LOC106600388 coding downstream 144870 10669340 ~ 10678831 (+)
G2103341 NA non-coding upstream 123318 10386888 ~ 10387209 (+)
G2103304 LOC106600326 non-coding upstream 187366 10321846 ~ 10323161 (+)
G2103305 NA non-coding upstream 202554 10306831 ~ 10307973 (+)
G2103288 NA non-coding upstream 259240 10250054 ~ 10251287 (+)
G2103281 NA non-coding upstream 262914 10241831 ~ 10247613 (+)
G2103443 NA non-coding downstream 2773 10527243 ~ 10527524 (+)
G2103445 NA non-coding downstream 4940 10529410 ~ 10529742 (+)
G2103449 NA non-coding downstream 36233 10560703 ~ 10561379 (+)
G2103453 NA non-coding downstream 48035 10572505 ~ 10572742 (+)
G2103475 NA non-coding downstream 95909 10620379 ~ 10620813 (+)
G2103342 LOC106600349 other upstream 118554 10391614 ~ 10391973 (+)
cbln12 cbln3 other upstream 273260 10228449 ~ 10237267 (+)
G2102608 NA other upstream 528336 9981009 ~ 9982191 (+)
G2102469 NA other upstream 764353 9745673 ~ 9746174 (+)
G2103519 NA other downstream 178258 10702728 ~ 10703020 (+)
G2103533 LOC105021892 other downstream 189106 10713576 ~ 10752960 (+)
LOC110508540 LOC106600420 other downstream 964290 11488248 ~ 11491159 (+)
G2104555 NA other downstream 1364646 11889116 ~ 11933092 (+)
G2106278 NA other downstream 2319917 12844387 ~ 12844904 (+)
G2103441 NA non-coding upstream 3174 10519490 ~ 10519842 (+)
G2103440 NA non-coding upstream 3554 10519214 ~ 10519462 (+)
LOC110508500 LOC106600383 other upstream 378 10510527 ~ 10524470 (+)

Expression


Co-expression Network