LOC110508522


Basic Information

Item Value
gene id LOC110508522
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10886198 ~ 10894141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471323.2
AGATTAGACGTTTGGTATTTGCTTAGTTAGGCCTAGTCATTAAACTCAAGACCGTCGGTCCAGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGTCCTGCTGGAGTTCATATACACAGCTTCGTCCTGTCATGAAATGTACCATTTTACTGAAtgtgtagtgtacagtagtgttCATACACAAAACAGTACATAATACAGATGTCTTTGTGTTTCTTTGAACTGAATCCGTCCAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTACATAGGTGGTTTGGTTGGATCAGAGATTGGGAAGACGATGGAGCCACATCAAAGACGAGTCCTCGAGTTCATTGTCAACATAGCCTTCACCAGCAATGTGTTTTAACCTTTGAACAGCAGTGGCAGAATGCTGCAGGAGAATCGAATTCTGTTATTTCCCATATTGTACTCATATAGCCAATAGAGGGTGCGACTCAGAATACTTTTTTCATCACCTCACAGAGCATGAACACAGAGCCTTTTTCTAGCTAGAACAGTTTGGTCTTTGCAAAATACAAGGCAAATCACTTTCTGTGGTCTTGCAGGGGAATTGATGGATTTCAGAATGTTTGGATTGTTCTGTTATTTTGGATAGTTTATTGCTTTTATGTAACTGAACTAGAAGTTCATTGTACACAGACAAACAGATGACTGGGAGACTGCCAACAGGGGGACTGTTGATTCAACTGAGCTAGCAAGACTGCAGTACCTACTCCGTCAGTTACATGGCagacctgtctgtctccatcACTCAGTCATATACTTCCTGCTCCGTTTCAGAGGTGTGCCAGTGTTTCTGGAGGGTAAATAGCTTTCATTGTTTACTGTACTTTCTCTGCTAATTTGTGTGGACTTAAACATTGGTACTTTCAGGACCATTACGTTTTTACATAAGTGTAAAGGATTGTTTGTCCGTTTTTGAGAATGGGATAGCTGTCTGTCACTGATATCCTGTCAATTGTTTCAACCTGTGCACTTTGAGTGTCACATTTAAAATTAACACCAAAACTATTAACTTACATGGGAGTTGTCCATTATCCATGTCGACTTAAGGTAGACTGACTGCTAGTGCGATGGGCTTCATGTGTCTACACGGAGTTGTATTAAAACCTTGTACTGCA
>XR_005040243.1
AGATTAGACGTTTGGTATTTGCTTAGTTAGGCCTAGTCATTAAACTCAAGACCGTCGGTCCAGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGTCCTGCTGGAGTTCATATACACAGCTTCGTCCTGTCATGAAATGTACCATTTTACTGAAtgtgtagtgtacagtagtgttCATACACAAAACAGTACATAATACAGATGTCTTTGTGTTTCTTTGAACTGAATCCGTCCAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTACATAGGTGATGAGATGGAATGATACTCCTGATTTGTCAAGCAGGATCtttcttattttttacttattCATCAAGAAATCCTCATTTATTTCTTGCACCATTAAAATACCCCCCAATCTTCA
>XR_005040244.1
AGATTAGACGTTTGGTATTTGCTTAGTTAGGCCTAGTCATTAAACTCAAGACCGTCGGTCCAGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTACATAGGTGATGAGATGGAATGATACTCCTGATTTGTCAAGCAGGATCtttcttattttttacttattCATCAAGAAATCCTCATTTATTTCTTGCACCATTAAAATACCCCCCAATCTTCA
>TU2406504
AGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGTCCTGCTGGAGTTCATATACACAGCTTCGTCCTGTCATGAAATGTACCATTTTACTGAAtgtgtagtgtacagtagtgttCATACACAAAACAGTACATAATACAGATGTCTTTGTGTTTCTTTGAACTGAATCCGTCCAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTGGTTTGGTTGGATCAGAGATTGGGAAGACGATGGAGCCACATCAAAGACGAGTCCTCGAGTTCATTGTCAACATAGCCTTCACCAGCAATGTGTTTTAACCTTTGAACAGCAGTGGCAGAATGCTGCAGGAGAATCGAATTCTGTTATTTCCCATATTGTACTCATATAGCCAATAGAGGGTGCGACTCAGAATACTTTTTTCATCACCTCACAGAGCATGAACACAGAGCCTTTTTCTAGCTAGAACAGTTTGGTCTTTGCAAAATACAAGGCAAATCACTTTCTGTGGTCTTGCAGGGGAATTGATGGATTTCAGAATGTTTGGATTGTTCTGTTATTTTGGATAGTTTATTGCTTTTATGTAACTGAACTAGAAGTTCATTGTACACAGACAAACAGATGACTGGGAGACTGCCAACAGGGGGACTGTTGATTCAACTGAGCTAGCAAGACTGCAGTACCTACTCCGTCAGTTACATGGCagacctgtctgtctccatcACTCAGTCATATACTTCCTGCTCCGTTTCAGAGGTGTGCCAGTGTTTCTGGAGGGTAAATAGCTTTCATTGTTTACTGTACTTTCTCTGCTAATTTGTGTGGACTTAAACATTGGTACTTTCAGGACCATTACGTTTTTACATAAGTGTAAAGGATTGTTTGTCCGTTTTTGAGAATGGGATAGCTGTCTGTCACTGATATCCTGTCAATTGTTTCAACCTGTGCACTTTGAGTGTCACATTTAAAATTAACACCAAAACTATTAACTTACATGGGAGTTGTCCATTATCCATGTCGACTTAAGGTAGACTGACTGCTAGTGCGATGGGCTTCATGTGTCTACACGGAGTTGTATTAAAACCTTGTACTGCACTTGATGACAGAAGCAAAAGCTACTACGAGCAAAATGTTACTTGTGGTCCTCATGTCAAACTGTTATGGTTGGAAATGCTAACCTTACAGTAACATTCTGCTGTGCTTACGGCATTTGTTAAACGATCACTAAACGTTGATGTTTTAAGCTGCAATTACTCTAGTACAACCGTTGCACTCAGTATTTGTTTAATATGGCTCATTGACCGAAATGCAGCCATATAACACCACTGTAAATATCAGTGCCTTTTTAGTCAGTACACAGTAGTCACCATTttaaaacactgagaaatgtCCCCTTGGTTGGAATGAGCTTGTATCACCTTCATTTCAGCAGCGGCACTAGATTACAACGTGAAATTGTATTTCACCACTCACCTGTTGAGGTACAGAAGTGTCTAAGTAGCACATTGATTAAAAGGAAATCCA

Function

NR:

description
PREDICTED: actin-binding protein IPP isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471323.2 False 1939 mRNA 0.47 4 10886627 10894141
XR_005040243.1 False 1179 mRNA 0.50 3 10887630 10894141
XR_005040244.1 False 1037 mRNA 0.52 4 10887630 10894141
TU2406504 True 2299 TUCP 0.46 4 10886198 10894080

Neighbor

gene id symbol gene type direction distance location
LOC110508520 LOC106600403 coding downstream 2037 10869116 ~ 10884590 (-)
LOC110508519 LOC106600402 coding downstream 33753 10845215 ~ 10852874 (-)
LOC110508508 LOC106600390 coding downstream 194382 10689183 ~ 10692245 (-)
LOC110508509 LOC106600390 coding downstream 204880 10677802 ~ 10681747 (-)
LOC110508501 LOC106600384 coding downstream 346282 10535026 ~ 10540345 (-)
LOC110508523 LOC106600405 coding upstream 11386 10905527 ~ 10911512 (-)
LOC110508524 NA coding upstream 78629 10972770 ~ 10985411 (-)
LOC110508527 LOC106600407 coding upstream 96954 10991095 ~ 10994103 (-)
LOC118944867 NA coding upstream 132900 11027041 ~ 11028427 (-)
LOC110508529 LOC106569411 coding upstream 143057 11037198 ~ 11063179 (-)
G2103993 LOC106600392 non-coding downstream 51980 10832777 ~ 10834647 (-)
G2103897 LOC106600396 non-coding downstream 62271 10737947 ~ 10824356 (-)
G2103970 NA non-coding downstream 76086 10810038 ~ 10810541 (-)
G2103894 LOC106600393 non-coding downstream 129290 10720152 ~ 10757337 (-)
G2103921 NA non-coding downstream 177454 10708832 ~ 10709173 (-)
G2105123 NA non-coding upstream 59612 10953753 ~ 10953984 (-)
G2105190 NA non-coding upstream 179049 11073190 ~ 11073427 (-)
G2105194 tada1 non-coding upstream 184553 11078694 ~ 11078982 (-)
G2105195 NA non-coding upstream 185061 11079202 ~ 11079927 (-)
G2105197 NA non-coding upstream 186593 11080734 ~ 11081223 (-)
G2103920 NA other downstream 178128 10708012 ~ 10708499 (-)
G2103257 NA other downstream 679951 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 771230 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 878724 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 1074769 9739138 ~ 9883971 (-)
G2105419 LOC104953893 other upstream 604985 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4645627 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4709544 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4809195 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5905249 16799390 ~ 16799869 (-)

Expression


Co-expression Network