LOC110508530 (jun)


Basic Information

Item Value
gene id LOC110508530
gene name jun
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11089516 ~ 11091825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589099.2
GTGTTAGTATATAATTTCCCATTTTTTTGCATgaaatatagctcagtatttgaattatttatttgatATCGTTTTTTTGcgaatctttatcaagggtgacaATTTGTGTGGTGACTGTGGTGCCAAATTGCCACGCTTCCACCTACAAAGTCAAAGAGCAAAAGAAGGAAAGCAATATTAGTCAACCTGATTAAGATTGGGTTGCGAAATAGAGCGGGTAACAATATTTTCAAAAACAATACGTAATCCCAGAGGACACCGCTCCTTTTACTGCATTACCTAATCCCATCAACCATTGCGGGAGGCGGGAACATGGCTGGTTGTCCACGCAACGTGCATGTCATTACAAAAAGTAACGCCCATCACATCATCTCAAACCAATAGGAAGCCTTAGAAATTACATCATTGTTATTTTCAGTATAGCAGCAGCATAGAAGTGGATAAAGTTCGTCTCCACGTTGGAAGTGCTAGAAAGTACATTGTATCGAGTGAGACACAGCATCTGCTTAGAAAAGAAAAGCCTTATTTCAGTTGGCAGATCGAATAAAACAATTCTTAATTGAAAAGACGTATATCGATTGAGGAAGTGAATATTTTTGTTTGATACTATTCTTCTTTTATCAAGTCTCAAGAAAAGTTTCCACGTAGGACATCAATAGTTGTCCTCCGACTTGAGTTTCGAACATTAGTCTACTTGTCCTAAAATTGTCAAAAGATTGGGGACATCGGATTGCAGTTTATCACTCCAAATTGTTTATTGCAATTTCAACAGTTGATGCTTTTATTTTTTCCCAACAACTATCTTCGAGATAAAGACCAGTCAATTGATGCCCACCAAGATGGAAGCTACATTCTATGACGAATCGGTAAATGGTCAGCAAGGCGCAGTGGGTGGATATCATGAGTTTAACCCGAATAGTATGAAGCAGAGTATGACACTGAACCTCAACGACCCTAAAATGTTTAAACCTCATCTGCGGGCGAAAGCTATCGATATACTGACGTCCCCTGATGTGGGATTATTAAAACTGGCCTCTCCGGAATTGGAAAGGCTCATCATCCAGTCGTGTAATGGTTTGACGACTCCGACCCCAACTCAGTTCCTCTGTCCCAAGAACATCACCGACGAGCAAGAGGGTTTTGCTGAGGGTTTCGTGAGGGCGCTCGCGGAGCTTCATTATCAACAGCATATGCCTAATGGCAGTTGTGACTCTCAGACGAATGCTTCCAACGACATGGCATCCGTATCTACTGTGTTGGACAGTCCTATACCCTACAGCTGCACCGTGCGCCCCGAGCCACCGGAATACACAAACTTGGGCCTTTTCAATCGGACTGTCAGCTCTGCGTCGGCACCTACCGGCGACAGACACTCCTCCGCCAGTTACACGTCCGTCCCGTCCCAAACCCACATCGAGACCCAGCTGCCAGCCCAGCACCCACGGCTACAGCCATTCAAAGAGGAGCCCCAGACGGTGCCCGAGATGAGCGGCGATACCCCTCCGATGTCTCCTATCGACATGGAGAGCCAGGAGAGGATAAAGGCCGAGAGAAAGCGCATGAGGAACAGGGTGGCCGCGTCTAAATGCCGGAAAAGGAAGCTGGAGAGGATCTCGAGGCTGGAGGACAGGGTCAAAAACCTGAAGACGCAACACACAGATTTGGTCTCTTCTGCCAACGTGCTCCGGGACGAACTGGCACTGCTCAAACAGAAGGTCATGGACCATGTTAACAGCGGGTGCCAACTCATATTGACGCAGCAGCTCCAGGCGTTCTGAACAGCCATAAGACATTGCGGTTTGAGTGAGACTTTTCATTATGGGACCAAACGCAGCTCCTATAGGGGCGTGTTCTTCGTCTTTGCGCCCTGACAGAATGGCGACAAGAAAAATAAACGTATTGGTGGAATAAATAGGCTAGTGGTGGCTACGGCCAACAAACAGTGGCAATGCCTGTTGATCGATTACGAGTTCTGACATTGTCTAGTATGTATATAGACCAAGTCTAGCACTGAGTTTTCTCACCAGCGACAAGTTGTACAATGTAACACTATAACGTTACGAGACTTTGCTTTATTGACACACCTTGTGCGAGGATTGACCCAGAGGTGTTTGTGTACTAGGACTGACACAAAACTGCCTTACTTTCATAACATTTACATTAATACCATTTTGTGAAAAGGTTCAAACAAATGTTAGACCTGAATGAATACTTTATCATAATACTATTTTTATGCCTGTCTTTTGAGCACTTCAGAAAATACAAATATACGACAAATACAATGTGGAATAAAAAGTCATGAATTGAGAA

Function

symbol description
jun Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Contributes to DNA-binding transcription factor activity and beta-catenin binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including hematopoietic progenitor cell differentiation; response to cadmium ion; and response to methylmercury. Part of transcription regulator complex. Is expressed in several structures, including digestive system; hematopoietic system; mesoderm; musculature system; and sensory system. Human ortholog(s) of this gene implicated in pulmonary tuberculosis. Orthologous to human JUN (Jun proto-oncogene, AP-1 transcription factor subunit).

NR:

description
transcription factor AP-1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589099.2 True 2310 mRNA 0.44 1 11089516 11091825

Neighbor

gene id symbol gene type direction distance location
LOC110508529 LOC106569411 coding downstream 26337 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 61089 11027041 ~ 11028427 (-)
LOC110508527 LOC106600407 coding downstream 95413 10991095 ~ 10994103 (-)
LOC110508524 NA coding downstream 104105 10972770 ~ 10985411 (-)
LOC110508523 LOC106600405 coding downstream 178004 10905527 ~ 10911512 (-)
LOC110508163 LOC106569415 coding upstream 51658 11143483 ~ 11145238 (-)
LOC110508539 NA coding upstream 367548 11459373 ~ 11464078 (-)
LOC110508543 LOC106600422 coding upstream 423729 11515554 ~ 11518446 (-)
LOC110508547 pter coding upstream 464766 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 498283 11590108 ~ 11631741 (-)
G2105144 NA non-coding downstream 4726 11084254 ~ 11084790 (-)
G2105197 NA non-coding downstream 8293 11080734 ~ 11081223 (-)
G2105195 NA non-coding downstream 9589 11079202 ~ 11079927 (-)
G2105194 tada1 non-coding downstream 10534 11078694 ~ 11078982 (-)
G2105190 NA non-coding downstream 16089 11073190 ~ 11073427 (-)
G2105226 NA non-coding upstream 50681 11142506 ~ 11142727 (-)
G2105230 NA non-coding upstream 54080 11145905 ~ 11146181 (-)
G2105241 LOC106569416 non-coding upstream 76078 11167903 ~ 11168500 (-)
G2105221 NA non-coding upstream 81519 11173344 ~ 11175278 (-)
G2105251 NA non-coding upstream 106112 11197937 ~ 11200525 (-)
LOC110508522 NA other downstream 195436 10886198 ~ 10894141 (-)
G2103920 NA other downstream 381017 10708012 ~ 10708499 (-)
G2103257 NA other downstream 882840 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 974119 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 1081613 10004226 ~ 10007929 (-)
G2105419 LOC104953893 other upstream 407301 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4447943 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4511860 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4611511 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5707565 16799390 ~ 16799869 (-)

Expression


Co-expression Network