c8b (c8b)


Basic Information

Item Value
gene id c8b
gene name c8b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11337787 ~ 11343799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124607.1
GTTGAAGCCTACCGTTGGCCTAGGCTACTGCCTCCTCTGTGCTGCATTGTGCTTGCTCCTACTCCGTGATGTTGCCATAGCCGGCAGTGGCGAGGAGCCCAGTGGCGTCCGTGAGGCTCGGTCTGTGGGGACTCAGGTCGCCGTGCAGCCGGTGGACTGTGTACAATCAGAGTGGTCCTCCTGGACGCGCTGCGATGTCTGCAGGAAGAAGAGGTATCGTTATGCTAAGCTTGTCCAGCCATCTCAGTTTGGCGGGGAGCCCTGTCATGTCCAGGGCAAAGAGGTGGAGCCCTGTAGCCCTCCATCTCGCTACGACTGTACACATGATGAAACACCTCTGTGTGAAGGCTTCCTCTGTACTTACACAGGGCGCTGTGTGCCTATAGACCTGCGCTGTAATGGGGATGATGACTGTGGGGACTGGTCAGATGAGAAGGGCTGTCAGAAGGTGAACAAGGCCTGCAAGCAGGAGGCACAGGAGTACCATGGCATCGAGAACCTGGCCAAAGGAATCAACATACTGAACAGTAACTTAGAGGGAGTGGTCATTGACAACAGATACTACGCAGGCAGTTGCTTGCCTCACTACATCCAGGACGTCAGGTTCAGGAAGCCTTATAACCTGCAGCAGTACACACTGGAGACCAAAGGCACATACGACTTCAAGCTGCAGTCTTTCGAGTCATACTCTGAGTTTGTCTATTACACCATGACGGAGCGCTCTTCCAAGACCACGGTGTCCATTGGCTTTGCCGTGCCGGGCGTGGCCGAGTTCGGCTTCAACTACGCTGACTCCAAATACTCCAAGTCAGAGAAGAAAATACGCCGCGCCTCTAGGAAGGAAAACAGCTTTGTCCAGGCCAAGGCAGAGCTGCAACTGGCCCGATACATCCTGAAGTCAGAGGATCTGATGCTGCACCCGGAGTTCTTCCTGCGTCTTCGTGCCTTGCCCCAGTCCTACAACTACGGGGAGTACAGACAGATCTACAGAGACTATGGCACCCATTACATCACAGAGGCGACCCTGGGAGGAGACTACGAGTACACGGTCATCCTGGACAAGGAGAAGCTGGAGAAGACAGGTTATTCTCTGGAAGCCTACAAGAACTGTGTGCAGATAGGTCTGAAGGTGGGGGCCAACATCAAGGGAGTGTATGTGACTGTGGGGGTCGAGGGAGGTGGTTGTGATGGTCTGCTCAATGAAATGGGAGaGGACACAGTGAAAGGCAGCATGGTGGAGGACTTTGTCGCGGTGGTTCGGGGGGGTGACAGTGAGTCCATCACCTGGCTGGCTGCCAAGAAGCTGCCCACGCCACAACTGATGAGACTGTGGGGAGAAGCGGTGCATTACAACCCTGACTTCATCCGCAGCGTGACGCGGCCGCTATATGAGCTGGTGACCGCCAGAGACTTCTCCAGTGCTAACTCGCTGAAGAAGAACCTGAGGAGAGCCCTGGCTgaatacctggaggagagcagctCTTGCCGCTGTGCCCCCTGCCGCAACAACGGACTGGCTGTTCTCAAAGgcaccaggtgtgagtgtgtgtgtccatctggcTACAGTGGACTGGGTTGTGAGATCACCCAAAGACCAGATATAGGCATAGACGGCAGCTGGAGCTGCTGGGGTTCGTGGTCACCCTGCGCGGAGCGGTCTAAGACACGGAGCCGCCAGTGTAACAACCCTGCACCTAGCAGCGGAGGCATAGCCTGCAGAGGACTCCAGATGGAAACTACTGATTGTTTCTGATATTGTCCCGGACTCTTGATTGAAATAAAGATAATTCATGTCACCCTTGGAAA

Function

symbol description
c8b Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in liver. Human ortholog(s) of this gene implicated in type II complement component 8 deficiency. Orthologous to human C8B (complement C8 beta chain).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0019835 cytolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
K03998 C8B; complement component 8 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124607.1 True 1806 mRNA 0.55 12 11337787 11343799

Neighbor

gene id symbol gene type direction distance location
LOC110508534 LOC106600415 coding upstream 141324 11179677 ~ 11196463 (+)
LOC110508532 LOC106569416 coding upstream 161857 11153632 ~ 11175930 (+)
LOC110508533 NA coding upstream 175341 11160069 ~ 11162446 (+)
LOC110508162 tada1 coding upstream 250155 11070901 ~ 11087632 (+)
LOC110508528 LOC106600409 coding upstream 330422 10999076 ~ 11007365 (+)
LOC110508536 LOC106600418 coding downstream 15125 11358924 ~ 11378730 (+)
LOC110508537 LOC106600419 coding downstream 87764 11431563 ~ 11453510 (+)
LOC110508540 LOC106600420 coding downstream 144449 11488248 ~ 11491159 (+)
mcoln3a LOC106599955 coding downstream 149834 11493633 ~ 11499821 (+)
ssx2ipa LOC106600421 coding downstream 158146 11501945 ~ 11514131 (+)
G2104235 NA non-coding upstream 70570 11266578 ~ 11267217 (+)
G2104224 NA non-coding upstream 87006 11250480 ~ 11250781 (+)
G2104217 NA non-coding upstream 96542 11240893 ~ 11241245 (+)
G2104216 NA non-coding upstream 97465 11240030 ~ 11240322 (+)
G2104192 NA non-coding upstream 116620 11220947 ~ 11221167 (+)
G2104284 NA non-coding downstream 10506 11354305 ~ 11355918 (+)
G2104304 NA non-coding downstream 37872 11381671 ~ 11455815 (+)
G2104340 NA non-coding downstream 114454 11458253 ~ 11458579 (+)
G2104342 NA non-coding downstream 115738 11459537 ~ 11460137 (+)
G2104343 NA non-coding downstream 117274 11461073 ~ 11461545 (+)
G2103533 LOC105021892 other upstream 584827 10713576 ~ 10752960 (+)
G2103519 NA other upstream 634767 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 815149 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 945814 10391614 ~ 10391973 (+)
G2103305 NA other upstream 1029814 10306831 ~ 10307973 (+)
G2104555 NA other downstream 545317 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1500588 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1783163 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1789600 13133399 ~ 13133761 (+)

Expression


Co-expression Network