LOC110508536 (LOC106600418)


Basic Information

Item Value
gene id LOC110508536
gene name LOC106600418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11358924 ~ 11378730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589105.2
GAGGCGGACACCGGAGGTGGGAGCGCAACTAAATTTCGGTGCTCCTCAATGATTATTAGAAGTAACTTAGAAATTGCTCAACAGTCAACAACGAAAGTCACAGGGTGAATGAGCAGAATACACGGGAACGAAATAAAAGCCAAACCCTTGCAGTTAACTTAAAGGCAATCGTCACATCTCAATTGAATTTATCAGCACAATATATGGGTAAATATTCAGAATCATCTCTCAGCTGATGGTTAACTAACTATTGAACTCACTCCGCTTCGCTTTCTAGTTCAATTTACGAGAATTTAACGCGACTGAAGCTGCAACTTCGCCACTCTTTACTTGTTTATTTGGAAAATCATTTAAGTAAGTAGCCTATAAATGCAACGCTGTTTAATTTATGAGAAGACAATGGCACCAGAAACAAGGAACGGAGGAAGTTCTTCCCTGAataacaacaacagtaaagacaacagcaggaaaaccttcctggtcggTGTGGATCTCTTCTGCTTGTTTTTAGCCGGCCTGCCTTTCCTGATCATAGAAACTAGTGCTGTACAGCCCTACCGCCGAGGCTTTTACTGCAACGATGAGTCCATCAAGTACCCGGCCAAACACGGAGACACCATAAGCGACGCTGTGCTTTCTGCTGCTGGCATTCTTATCACCATCCTTTCTATCATCATTGGTGAGAGCTACATGATCTACTACCTGAACGAGGGCTCGAAGTCCTTCGTAGGGAACCCCTACATCTCCGCCCTCTACAAGCAGGTGGGCGTGTTCATCTTTGGCTGCGCCGTCAGTCAATCGTTCACGGACATCGCCAAGGTATCGGTGGGCCGCATGCGACCCCACTTCCTGGACGTGTGTAGGCCCGACTGGTCCGCCATCAACTGTTCTTTGGGCTACATCACAGACTACCAGTGTAATGGACCCGAGAGCAAAGTCCAGGAGGCCAGGAAGTCGTTCTTCTCTGGCCATGCATCCTTTTCCATGTACACCATGCTGTATTTGGTGTTCTACCTGCAGTCCAGGTTCACCTGGCGTGGAGCCCGTCTTCTGCGCCCCCTGACACAGTTCACCCTCATCATGATGTCCTTCTACACCGGCCTGTCCCGCGTCTCCGACCACAAGCACCACCCCACCGACGTCCTGGCTGGCTTCGCACAGGGAGCCCTGGTGGCCTACAGCATAGTGTTTTTCGTATCTGACCTGTTCAAGCCCAAAGGCAGAAGTTCAGCTCTACCAGTGACCCCATTAAAGAACCCCAACAACCCCATGGCAGACATCAGAGAGAGGAGCAACCACATCACCATGGCatagtagagaccagtagagtaTACCTGTACAGCTATCTTCCGCTGTAGGTTTTAAACATCCTTTATTTCACCTACTGGTCTGTACTGGATGTGTTAAACAACCAGCGAAAGCAGCAAGATTGCTGACCGACATGTCTGCAAGGCACAGAGAAATAATGAGCTATGGAGAACTTACTttggaaagaagaggagagacacacacacaaacaacacacacacgcacttgaACAGCCAGCAACATCCATGTTTCTCACCATCTCATCTGACATGTGAATGTGGAAGAGTTTGGGGAGAGAATTCATATTTTGCTTTGATTACCCAAGGTCTCTATATCAAACCTGGTGCTTTGCAGATTAACTGTATCTTTATCTGCAGACAAGGAACTTTCACAGACAGAAtcatgaaggaaggagagaaggaaac

Function

NR:

description
phospholipid phosphatase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589105.2 True 1733 mRNA 0.48 6 11358924 11378730

Neighbor

gene id symbol gene type direction distance location
c8b c8b coding upstream 15125 11337787 ~ 11343799 (+)
LOC110508534 LOC106600415 coding upstream 162461 11179677 ~ 11196463 (+)
LOC110508532 LOC106569416 coding upstream 182994 11153632 ~ 11175930 (+)
LOC110508533 NA coding upstream 196478 11160069 ~ 11162446 (+)
LOC110508162 tada1 coding upstream 271292 11070901 ~ 11087632 (+)
LOC110508537 LOC106600419 coding downstream 52833 11431563 ~ 11453510 (+)
LOC110508540 LOC106600420 coding downstream 109518 11488248 ~ 11491159 (+)
mcoln3a LOC106599955 coding downstream 114903 11493633 ~ 11499821 (+)
ssx2ipa LOC106600421 coding downstream 123215 11501945 ~ 11514131 (+)
LOC110508545 gbg5 coding downstream 135473 11514203 ~ 11516782 (+)
G2104284 NA non-coding upstream 3006 11354305 ~ 11355918 (+)
G2104235 NA non-coding upstream 91707 11266578 ~ 11267217 (+)
G2104224 NA non-coding upstream 108143 11250480 ~ 11250781 (+)
G2104217 NA non-coding upstream 117679 11240893 ~ 11241245 (+)
G2104216 NA non-coding upstream 118602 11240030 ~ 11240322 (+)
G2104304 NA non-coding downstream 2941 11381671 ~ 11455815 (+)
G2104340 NA non-coding downstream 79523 11458253 ~ 11458579 (+)
G2104342 NA non-coding downstream 80807 11459537 ~ 11460137 (+)
G2104343 NA non-coding downstream 82343 11461073 ~ 11461545 (+)
G2104345 NA non-coding downstream 85799 11464529 ~ 11464775 (+)
G2103533 LOC105021892 other upstream 605964 10713576 ~ 10752960 (+)
G2103519 NA other upstream 655904 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 836286 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 966951 10391614 ~ 10391973 (+)
G2103305 NA other upstream 1050951 10306831 ~ 10307973 (+)
G2104555 NA other downstream 510386 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1465657 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1748232 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1754669 13133399 ~ 13133761 (+)

Expression


Co-expression Network