LOC110508540 (LOC106600420)


Basic Information

Item Value
gene id LOC110508540
gene name LOC106600420
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11488248 ~ 11491159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966817.1
attctctctcccctcgcccATCGACTTTTAACTAAGCCATGCTGTTGTTGTTGATAGCTAGCCAGCATAAACTAGCTAGGACTACTGACTGAACCCATTCGTCTCCAATCGACTCTCAGCTGCGCGACAACGTCGTCAATTTGGGCAGGCGAGTCTGTGTAGCCTCGGCTCTCTCCAAAtcctattgtggctagcttcacatatgTTCTAGTTTCTGTTCGCCAAATTAGAAAATCAGGTCCCACTCTATGCTTCAGTTATTTGACCATGTCAAGCAAAACAATAAGAAATCAGAGAATAACAATATATTATTTGAACACTGGGATATGTTGTTTATCCCATAATGGAAAAAAACAGTGGTGATGCGATAGTAGCCGACTTGTATAGCGCAACTGAATGAAAAACACTcatcataaaaaaaaatatttaaaaaacactcATCATTCACTTGCCCATACATGACTTGCGTAAACTCATCCATGGAATCAGGAAGTAATAATTGGCAGCGGTTCACTCATGAGAAACTTATATTTACCGAGGCTCTGGAAGCTTATGTTTTGTATCGGCAAATAACTAGACTATAGGCTATTAGACAAGAGTTACGCACTGGAAAATACAATATCCGTGTACCGGAGCCTATCTTTTGGTTTAAATATTTTTAGTGTGCCATTTTAATCTCGTAAAGTACCCGGAAGACTTGAATTTTACACTTTAGGTAGGGTGAGTAGGATGGATGTTCCTCACCTGACAGAAGATGAAATGGCCGATATAAAAAAGGAAGTCCTGACGAGGCTGCGGCCGTACCTTTGTGAAAAGATCCGGGCTGACCGTCATTTTGACTACCTGCGCTCGCGGAAGATCCTGACGCGAGACGACACAGAGGAGATCAGCTGCAGGATCACGCAGACCAAGAAAACGGGCTTGCTCCTGGACTACCTGGCTGAGAACCCTCGGGGGCTGGATACCCTGATCGAGTCCATCCAACAAGGACGTACGCTCAACTTCCTGATTACCAAGATCACTGATGAAGTGCAGAAGGTGAAGAACGAGAAGATAGAATCTCTCAGAgCAGGGGCATCCAGTTCCACCTCGGGCTTCCTGCCAACTCAGGACACATCCGGGGTCAATAAAGACCTCTCCAAGACACTGTCATATGAGTCCAACCTGGCATCCACCATGTTATACAACGGAGAAGGGAGCCCATCCACCTCTGACGCCCTAAGGTTCCTCAACCGGCCTGCTGCCTCCAGCCATGGGAAGGACGTGTTGTCATCCATGCGAGGGGGTAGCATGGCCGTGTCTTCATCCCAGGTCTCTTCCACACTGCCCAGGCCTGGAGACCCAGGGGCTCCCCCCCTGCCGCAGGAAGTGCTGCTACTGCCAGAGGCCTCATCTAACATGGACGCTGGACCACACAGGAGCACGGCGATCAGCGGAGGGGATGTCAACTTCCAGCCCCTGAGGTCACGCTCCACACCCACTTTCATGTCATGCAGGGACCCTTCACCTCAGCCCCCACCAAAATCTTAATGAgcacccctcccccccccccccccccccacaccctggACTACTTCCCAGCATTACTCATAACAAACATTCACTCTTCAAATGTGTTGTTCGTATCAGTGTATGTGTTTTATCAATGGTTTTAGTTGAGTGTTACTTTAAACAAATATCAACTTGTAAAGTATGTTCCATGCCTTACATTATACACTGGGTCAACCCGAAAGCTGGACAAACCTGTTTTGGGTTCAATATGAAATAAGTAACTGCTTACTAATGATGCCTCAATCATAAGCTGTACCCTCATGCATTTTACTCTGCTTCTAT
>TU2406941
ACTCATGAGAAACTTATATTTACCGAGGCTCTGGAAGCTTATGTTTTGTATCGGCAAATAACTAGACTATAGGCTATTAGACAAGAGTTACGCACTGGAAAATACAATATCCGTGTACCGGAGCCTATCTTTTGGTTTAAATATTTTTAGTGTGCCATTTTAATCTCGTAAAGTACCCGGAAGACTTGAATTTTACACTTTAGGTAGGGTGAGTAGGATGGATGTTCCTCACCTGACAGAAGATGAAATGGCCGATATAAAAAAGGAAGTCCTGACGAGGCTGCGGCCGTACCTTTGTGAAAAGATCCGGGCTGACCGTCATTTTGACTACCTGCGCTCGCGGAAGATCCTGACGCGAGACGACACAGAGGAGATCAGCTGCAGGATCACGCAGACCAAGAAAACGGGCTTGCTCCTGGACTACCTGGCTGAGAACCCTCGGGGGCTGGATACCCTGATCGAGTCCATCCAACAAGGACGTACGCTCAACTTCCTGATTACCAAGATCACTGATGAAGTGCAGAAGGTGAAGAACGAGAAGATAGAATCTCTCAGAgCAGGGGCATCCAGTTCCACCTCGGGCTTCCTGCCAACTCAGGACACATCCGGGGTCAATAAAGACCTCTCCAAGACACTGTCATATGAGTCCAACCTGGCATCCACCATGTTATACAACGGAGAAGGGAGCCCATCCACCTCTGACGCCCTAAGGTTCCTCAACCGGCCTGCTGCCTCCAGCCATGGGAAGGACGTGTTGTCATCCATGCGAGGGGGTAGCATGGCCGTGTCTTCATCCCAGGTCTCTTCCACACTGCCCAGGCCTGGAGACCCAGGGGCTCCCCCCCTGCCGCAGGAAGTGCTGCTACTGCCAGAGGCCTCATCTAACATGGACGCTGGACCACACAGGAGCACGGCGATCAGCGGAGGGGATGTCAACTTCCAGCCCCTGAGGTCACGCTCCACACCCACTTTCATGTCATGCAGGGACCCTTCACCT

Function

NR:

description
B-cell lymphoma/leukemia 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966817.1 False 1833 mRNA 0.47 3 11488248 11491159
TU2406941 True 997 TUCP 0.52 3 11488760 11490835

Neighbor

gene id symbol gene type direction distance location
LOC110508537 LOC106600419 coding upstream 34738 11431563 ~ 11453510 (+)
LOC110508536 LOC106600418 coding upstream 109518 11358924 ~ 11378730 (+)
c8b c8b coding upstream 144449 11337787 ~ 11343799 (+)
LOC110508534 LOC106600415 coding upstream 291785 11179677 ~ 11196463 (+)
LOC110508532 LOC106569416 coding upstream 312318 11153632 ~ 11175930 (+)
mcoln3a LOC106599955 coding downstream 2474 11493633 ~ 11499821 (+)
ssx2ipa LOC106600421 coding downstream 10786 11501945 ~ 11514131 (+)
LOC110508545 gbg5 coding downstream 23044 11514203 ~ 11516782 (+)
LOC118944828 NA coding downstream 25647 11516806 ~ 11518250 (+)
LOC110508546 LOC106600424 coding downstream 36990 11528149 ~ 11546135 (+)
G2104362 NA non-coding upstream 2472 11485570 ~ 11485776 (+)
G2104345 NA non-coding upstream 23473 11464529 ~ 11464775 (+)
G2104343 NA non-coding upstream 26703 11461073 ~ 11461545 (+)
G2104342 NA non-coding upstream 28111 11459537 ~ 11460137 (+)
G2104340 NA non-coding upstream 29669 11458253 ~ 11458579 (+)
G2104393 NA non-coding downstream 58329 11549488 ~ 11549814 (+)
G2104397 NA non-coding downstream 64612 11555771 ~ 11556004 (+)
G2104401 pter non-coding downstream 71653 11562812 ~ 11563335 (+)
G2104432 NA non-coding downstream 240021 11731180 ~ 11739467 (+)
G2103533 LOC105021892 other upstream 735288 10713576 ~ 10752960 (+)
G2103519 NA other upstream 785228 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 965610 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 1096275 10391614 ~ 10391973 (+)
G2103305 NA other upstream 1180275 10306831 ~ 10307973 (+)
G2104555 NA other downstream 397957 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1353228 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1635803 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1642240 13133399 ~ 13133761 (+)
G2106549 NA other downstream 1642735 13133894 ~ 13134485 (+)

Expression


Co-expression Network