mcoln3a (LOC106599955)


Basic Information

Item Value
gene id mcoln3a
gene name LOC106599955
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11493633 ~ 11499821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589111.2
AGAATGACAGTCACAGTGATCGAGTGTCTCCGTGTCTGTTCTATCCGATGTTGACAGAAAAGAAAACGTGCTTGTTCACGCACTAAATCTGCTCAGTAGAGCGCGGCAGGTGCATCTCTGGATCACAGtatagtctacagtatagaAGGATCTCCTTCCCCCGATGGATGACGTGGAGCCCCTTGTGCCCCAGGGgccagcagaggagaggagaccaaaTGGCCACTGCACCCGATGCCCCATCTCCAGCCAGAGCCCCGGTGATTCCAAAGTGGTGGAAGACTTCAGGAGGAGGCTCAAGTACTTCTTTATGAACCCCTGTGAAAAATATAGAGCCAGGGGCCGGAAACCATGGAAACTAATGTTACAGATTCTGAAAATTGCCATCATCACGTTTCAGTTGGTGTCTTTTGGATTGAGTAACGAGATGATGGTGACCTTTAAAGAGGAAAACCTGATGGTGTTTAAACACCTCTTCCTGAAAGAATATAAGGACCAACGTGTGGACAGATACGCAGTGTACACCAAAACAGATGTGTACGACCACATCTATTACGTCATCGATAGGTTTATAAACCTGCAGAACCTGACTGTAGGGAACCATGCGTATGAGAAGATAGAGGGCGAGTACACCCCTCTGACCCTTTGTCAGGAGTTCTTCAGGAAAGGCAGCATCTCCCCTGGCAACGACACCTTTGATATAGACCCACATGTAGACAAAGAATGTATTTCCGTATATCCTCTGGAGCCATTGGAGGATAAAACTTTGTCAAGAGACATTAACTTTTCTCTGGATTTTAAAAGGCTGTTGTCAGTAAACATCTACCTCACGTTGAAAGCCATCAACCTGCAGACAGTGCGCCACCACGAGCTCCCAGACTGTTATGCCTTTAGTATAATTATAATGTTTGACAATCGTGCAAACAGTGGGAGGATAAAGATTAACTTAGAAAATAATGTTGGAATCAATGAATGTAAAGACTGGAATGTTGCAAGCACTTCTGGGAAGAACAACCACCTCTTGCTGTTTGATTCCTTCGTCATCCTCGCCTGCTTTACCTCACTCATCTTGTGCACACGCTCAGTCTACAAAGGATCTCAGCTCCAGTTTCATTACACTGCATTCTTCCACACCTACTTTGGTAAAACTGTGTCCTGGTCTGAGCGCATGGAGTTTGTGAACGGCTGGTATATTCTGATCATCGTCAGCGATACACTGACCATCGCTGGATCCGCCCTCAAAATAGGAATACAGACTAAGGACCTTACAAACTATGATGTCTGCAGTATTTTGCTTGGGACATCCACAATGCTTGTCTGGGTTGGAGTTATCCGCTACCTGGGTTTCTTTAAGAAATATAACATCCTAATTCTGGCCCTAAGGGCAGCGTTTCCAAATGTGATCCGCTTCTCCTGCTGCGCTGGCTTGATCTACCTGGGCTACTGTTTCTGTGGCTGGATCGTTCTGGGGCCGTATCATGAGAAATTCCGGACCTTGGACAAGGTGACGGAGTGCCTGTTCTCTCTGATCAACGGTGATGACTTGTACTCCACTTTCcagaagatgagagagaagagatacaTGGTGTGGCTGTTCAGCAGGCTCTACctctactccttcctctctctcttcatttacATGGTGCTCAGTCTGTTCATTGCCCTCATCACAGACACATACGAGACCATCAAGcaacacCAGAAGGACAGAGTCCTGGTGTCCCAGCTGAAGGCCTTTGTGGCTGAGTGTAGAGACCAGCCTGACTCTGGGAAGTACAAGATAGACAAGGAACccacctgctgctgctactgctttgGATAGACCCTATAAagtagccgtgtgtgtgtgcgtgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgtgtgcgtgtgtg
>XM_036966956.1
CCGTCGCCGTTCCATTTATGTTCCAACTTTTAGTAGGAATAACCTAGCAAagtgttgatgatgatgacaaAGACAGAGATGAAGACATTTAAATAGTTAGAACAAATAACGAGGTTGTATCTTGATTTATATTTGGTGATTTGGGACAGTAAATGTTTTGGTTTTTTGCCACTTGTGTTAGACTGTATCAATTGTCGTTGAACAGCAACTTTATGTGGACCACATGACATTTTCCTACGTATTACCAATAGAAAGGTATTTTTAAAGTTGTTTATGTGTTTGCTCTGCTGTAGGCCTACATCTTCATGTTAATGAATAATGGAAAATAAGAAGTGTTCGTAGATGTCCCAGACCAGTGTAATTTATCTTGTTTTTAGTGTCATTTATGGAGCCCATGGGAGCATAAAAAGTGACAGCGACAGAAGTCATTGAATGCAGTCCAACCTGTTTAGATGAAGATCAAAATGAAAGGAATGgctgaactctctctctttcatcacaTTATTCTGCACTTTCAAAAACATGTCTGTTTGACTCTGCCTGACTCTCTCTATATTAGTTTCAGTAGCCCAGTACTCGTTCATAATTCCAAGATGGTGAAATCCTGTGTTTGACTAAACACCAGCTGAAATGACAATCAGAATGCTGATTCATTTTAACCACTGCCACTTCTTCCCTTGACTTTGGCTGTCATGTCAAATCTGTGTGTGACTAATCGAGTGgtatctacagtatagtctacagtatagaAGGATCTCCTTCCCCCGATGGATGACGTGGAGCCCCTTGTGCCCCAGGGgccagcagaggagaggagaccaaaTGGCCACTGCACCCGATGCCCCATCTCCAGCCAGAGCCCCGGTGATTCCAAAGTGGTGGAAGACTTCAGGAGGAGGCTCAAGTACTTCTTTATGAACCCCTGTGAAAAATATAGAGCCAGGGGCCGGAAACCATGGAAACTAATGTTACAGATTCTGAAAATTGCCATCATCACGTTTCAGTTGGTGTCTTTTGGATTGAGTAACGAGATGATGGTGACCTTTAAAGAGGAAAACCTGATGGTGTTTAAACACCTCTTCCTGAAAGAATATAAGGACCAACGTGTGGACAGATACGCAGTGTACACCAAAACAGATGTGTACGACCACATCTATTACGTCATCGATAGGTTTATAAACCTGCAGAACCTGACTGTAGGGAACCATGCGTATGAGAAGATAGAGGGCGAGTACACCCCTCTGACCCTTTGTCAGGAGTTCTTCAGGAAAGGCAGCATCTCCCCTGGCAACGACACCTTTGATATAGACCCACATGTAGACAAAGAATGTATTTCCGTATATCCTCTGGAGCCATTGGAGGATAAAACTTTGTCAAGAGACATTAACTTTTCTCTGGATTTTAAAAGGCTGTTGTCAGTAAACATCTACCTCACGTTGAAAGCCATCAACCTGCAGACAGTGCGCCACCACGAGCTCCCAGACTGTTATGCCTTTAGTATAATTATAATGTTTGACAATCGTGCAAACAGTGGGAGGATAAAGATTAACTTAGAAAATAATGTTGGAATCAATGAATGTAAAGACTGGAATGTTGCAAGCACTTCTGGGAAGAACAACCACCTCTTGCTGTTTGATTCCTTCGTCATCCTCGCCTGCTTTACCTCACTCATCTTGTGCACACGCTCAGTCTACAAAGGATCTCAGCTCCAGTTTCATTACACTGCATTCTTCCACACCTACTTTGGTAAAACTGTGTCCTGGTCTGAGCGCATGGAGTTTGTGAACGGCTGGTATATTCTGATCATCGTCAGCGATACACTGACCATCGCTGGATCCGCCCTCAAAATAGGAATACAGACTAAGGACCTTACAAACTATGATGTCTGCAGTATTTTGCTTGGGACATCCACAATGCTTGTCTGGGTTGGAGTTATCCGCTACCTGGGTTTCTTTAAGAAATATAACATCCTAATTCTGGCCCTAAGGGCAGCGTTTCCAAATGTGATCCGCTTCTCCTGCTGCGCTGGCTTGATCTACCTGGGCTACTGTTTCTGTGGCTGGATCGTTCTGGGGCCGTATCATGAGAAATTCCGGACCTTGGACAAGGTGACGGAGTGCCTGTTCTCTCTGATCAACGGTGATGACTTGTACTCCACTTTCcagaagatgagagagaagagatacaTGGTGTGGCTGTTCAGCAGGCTCTACctctactccttcctctctctcttcatttacATGGTGCTCAGTCTGTTCATTGCCCTCATCACAGACACATACGAGACCATCAAGcaacacCAGAAGGACAGAGTCCTGGTGTCCCAGCTGAAGGCCTTTGTGGCTGAGTGTAGAGACCAGCCTGACTCTGGGAAGTACAAGATAGACAAGGAACccacctgctgctgctactgctttgGATAGACCCTATAAagtagccgtgtgtgtgtgcgtgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgtgtgcgtgtgtg

Function

NR:

description
mucolipin-3-like

GO: NA

KEGG:

id description
K04994 MCOLN3, TRPML3; mucolipin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589111.2 False 1911 mRNA 0.47 13 11493633 11499821
XM_036966956.1 True 2515 mRNA 0.44 12 11493773 11499821

Neighbor

gene id symbol gene type direction distance location
LOC110508540 LOC106600420 coding upstream 2474 11488248 ~ 11491159 (+)
LOC110508537 LOC106600419 coding upstream 40123 11431563 ~ 11453510 (+)
LOC110508536 LOC106600418 coding upstream 114903 11358924 ~ 11378730 (+)
c8b c8b coding upstream 149834 11337787 ~ 11343799 (+)
LOC110508534 LOC106600415 coding upstream 297170 11179677 ~ 11196463 (+)
ssx2ipa LOC106600421 coding downstream 2124 11501945 ~ 11514131 (+)
LOC110508545 gbg5 coding downstream 14382 11514203 ~ 11516782 (+)
LOC118944828 NA coding downstream 16985 11516806 ~ 11518250 (+)
LOC110508546 LOC106600424 coding downstream 28328 11528149 ~ 11546135 (+)
LOC110508550 LOC106600426 coding downstream 147451 11647272 ~ 11702699 (+)
G2104362 NA non-coding upstream 7857 11485570 ~ 11485776 (+)
G2104345 NA non-coding upstream 28858 11464529 ~ 11464775 (+)
G2104343 NA non-coding upstream 32088 11461073 ~ 11461545 (+)
G2104342 NA non-coding upstream 33496 11459537 ~ 11460137 (+)
G2104340 NA non-coding upstream 35054 11458253 ~ 11458579 (+)
G2104393 NA non-coding downstream 49667 11549488 ~ 11549814 (+)
G2104397 NA non-coding downstream 55950 11555771 ~ 11556004 (+)
G2104401 pter non-coding downstream 62991 11562812 ~ 11563335 (+)
G2104432 NA non-coding downstream 231359 11731180 ~ 11739467 (+)
G2103533 LOC105021892 other upstream 740673 10713576 ~ 10752960 (+)
G2103519 NA other upstream 790613 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 970995 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 1101660 10391614 ~ 10391973 (+)
G2104555 NA other downstream 389295 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1344566 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1627141 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1633578 13133399 ~ 13133761 (+)
G2106549 NA other downstream 1634073 13133894 ~ 13134485 (+)

Expression


Co-expression Network