LOC110508546 (LOC106600424)


Basic Information

Item Value
gene id LOC110508546
gene name LOC106600424
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11528149 ~ 11546135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589124.2
CCACCCAATAGGTTAGAGCGCGCCGCCGGGTGTGTGTTGACCATCGAAAGAGAAGGAGTTGCACGGAAAGGGTGAAAGTTTGAAGCTGCCACAGATCTCCTCGCATAGGCGTGTCGCTTGTGTCTGTCGTTTCGGAAACTGGAGATCTTATCCTGGCGGACAATTTATCGAGTAGAGCACTTTCAGGAGTCAGTGAACCGCCGCGTGGACTTGTCCAAGAGAAAATGACCGAGAATGCAGTGTTCTCCCAGAACAAGGTTTTGACCATCGACACCATGAACCCCAATGTGAAGAATGTGGAGTATGCCGTGCGCGGACCCATTGTGCAGCGCGCGGTGCAGATCGAGAAGGAGCTGAGAGAGGGAGTGAAGAAGCCCTTCACTGAGGTCATCAAGGCCAATATCGGTGACGCCCATGCCATGGGCCAGCAGCCAATCACCTTCTTCCGCCAGGTCTTGGCACTCTGCTCCTACCCGGAACTCTTGAAGGACAATATGTTTCCAGAGGATGCCAAAAGCAGAGCGCGCCGCATTCTGCAGGCTTGTGGAGGGAGTAGTTTGGgtgcgTACAGTGCCAGTCAGGGTATAGACTGTGTGCGGCAGGACGTAGCTCGCTACATCGAGCGTCGGGACGGGGGCGTGCCCTGTGACCCAGACAACGTCTACCTCACCAGCGGCGCCAGCGACGGCATCGTGactaTGCTGAAGCTGTTGGTGTGTGGTGAGGGTGCGTCGAAGACAGGGGTGATGATCTCCATCCCTCAGTACCCTCTGTACTCGGCTGCTCTGGCTGAGCTGGGTGCTGTGCAGGTCAACTACTACCTGAACGAGGAGAAGTGCTGGAGCATGGACCTCAGTGAGCTGGAGCGCTCCCTAGCGGAGGCCAGGAAGCACTGCAACCCCAAAGTCCTCTGCATCATCAACCCTGGAAACCCCACTGGTCAGGTCCAGAGTAGACAGTGCATTGAGGATGTGATCCGATTCGCTGCTAAGGAGCATCTCTTCCTGATGGCTGATGAGGTGTACCAGGATAATGTGTATGCGGAGGGTTGTCAGTTCCATTCCTTTAAGAAGGTGCTGTTTGAGTTGGGACCACAGTACTCCAACACTGTAGAGCTGGTGTCTTTCCACTCCACCTCCAAGTGCTACATGGGAGAGTGTGGTTTCCGTGGGGGTTACATGGAGGTGATCAACATGGACCCAGAGGTGAAAGCCCAGCTCATTAAGCTGGTGTCGGTCAGACTGTGTCCCGCCGTCCCTGGTCAGGCTCTAATGGACCTGGTGGTCAACTCCCCACAGCCAGGAGAACCTTCCTACACCACCTTCATGAAGGAGCGAACAACAACCCTCAGTCTGCTGGCAGAGAAGGCCAAGTTGACAGAGGAAATTTTGAACACTGTACCTGGGATCACCTGTAACCCTGTCCAGGGAGCCATGTACTCGTTCCCCAACATCAGCCTGCCTCAGAAAGCCATCAAAGAGGCGAAGGCTCTGGGCCAGGCACCGGACATGTTCTACTGTatgaagatgttggaggagacTGGCATCTGTCTGGTGCCGGGAAGTGGCTTTGGACAGAAAGACGGGACCTACCACTTCAGGATGACCATTCTGCCGCCCACAGACAAGCTGAAGCTCTTACTGGCTAAAGTGAAGGAGTTCCACCAGAAATTCACTCGGCAGTACTCTTAATCATCCTCCTTTAACTTCCTAACTTTCACCAAATCAGAAGAGAATAGGACACAGACCAATATGTGCACAATCTACCAGCCAACCTATCAGAAATCATCTGTCAATAAGTGCCTACATCTTCGGTCACCATGACAATGCACTTTAACTCCTAGGCCTACAAGATTCCAAGGAATGGTGGACTCACAGACTGTACATGTAAAAATGTAGTGGTTGTGAACACCAAGGAGACTTAGTTTGGAGTTgtagtttttttttatgttgggACATATCAAATTTATCTGACACACATAACTTGATTGAATTGATGTTCATTGTCACCTcggttgtgtgtctgtgcacaCACTTGTGTGGCATGATCACACAAGTCAAGGCCAGTATGACGGTACAGTacatttttagtcatttagcacacACTCTTaaccagagcaacttacagtagtgagaacatacattttcatactggtcccccatgggaatctaacccacaaccctggcgtcacaagcaccatgctctaccaactgagccacgctGGACTAGTAGTAGTGTATGAAATGGAAAGAGCTACTAGATTATTTCCAGACTCTGTAGAAATTGTTTTGTCAGTATTGTAGTAAGGTACTGTATAAGATAGTATTATGTAAGAGAAGCTTTCACATAATGATTTTAATTGAAATatgattttattacatttgctaCATAAATACAAAATTTTTGcctctttttttttgtgtggaacTTTCCGTCATAGTGCTAGACTTCCACAAGAGGGCACACTTGTCACAACCCATACATCTACTACAAAGAATGTCCTTGACTTTCAATTGAGTAGCTTACCTTCACATTCTTTAGACCAAATTCATGGAAAAAAACAG
>XM_021589125.2
CCACCCAATAGGTTAGAGCGCGCCGCCGGGTGTGTGTTGACCATCGAAAGAGAAGGAGTTGCACGGAAAGGGTGAAAGTTTGAAGCTGCCACAGATCTCCTCGCATAGGCGTGTCGCTTGTGTCTGTCGTTTCGGAAACTGGAGATCTTATCCTGGCGGACAATTTATCGAGCACTTTCAGGAGTCAGTGAACCGCCGCGTGGACTTGTCCAAGAGAAAATGACCGAGAATGCAGTGTTCTCCCAGAACAAGGTTTTGACCATCGACACCATGAACCCCAATGTGAAGAATGTGGAGTATGCCGTGCGCGGACCCATTGTGCAGCGCGCGGTGCAGATCGAGAAGGAGCTGAGAGAGGGAGTGAAGAAGCCCTTCACTGAGGTCATCAAGGCCAATATCGGTGACGCCCATGCCATGGGCCAGCAGCCAATCACCTTCTTCCGCCAGGTCTTGGCACTCTGCTCCTACCCGGAACTCTTGAAGGACAATATGTTTCCAGAGGATGCCAAAAGCAGAGCGCGCCGCATTCTGCAGGCTTGTGGAGGGAGTAGTTTGGgtgcgTACAGTGCCAGTCAGGGTATAGACTGTGTGCGGCAGGACGTAGCTCGCTACATCGAGCGTCGGGACGGGGGCGTGCCCTGTGACCCAGACAACGTCTACCTCACCAGCGGCGCCAGCGACGGCATCGTGactaTGCTGAAGCTGTTGGTGTGTGGTGAGGGTGCGTCGAAGACAGGGGTGATGATCTCCATCCCTCAGTACCCTCTGTACTCGGCTGCTCTGGCTGAGCTGGGTGCTGTGCAGGTCAACTACTACCTGAACGAGGAGAAGTGCTGGAGCATGGACCTCAGTGAGCTGGAGCGCTCCCTAGCGGAGGCCAGGAAGCACTGCAACCCCAAAGTCCTCTGCATCATCAACCCTGGAAACCCCACTGGTCAGGTCCAGAGTAGACAGTGCATTGAGGATGTGATCCGATTCGCTGCTAAGGAGCATCTCTTCCTGATGGCTGATGAGGTGTACCAGGATAATGTGTATGCGGAGGGTTGTCAGTTCCATTCCTTTAAGAAGGTGCTGTTTGAGTTGGGACCACAGTACTCCAACACTGTAGAGCTGGTGTCTTTCCACTCCACCTCCAAGTGCTACATGGGAGAGTGTGGTTTCCGTGGGGGTTACATGGAGGTGATCAACATGGACCCAGAGGTGAAAGCCCAGCTCATTAAGCTGGTGTCGGTCAGACTGTGTCCCGCCGTCCCTGGTCAGGCTCTAATGGACCTGGTGGTCAACTCCCCACAGCCAGGAGAACCTTCCTACACCACCTTCATGAAGGAGCGAACAACAACCCTCAGTCTGCTGGCAGAGAAGGCCAAGTTGACAGAGGAAATTTTGAACACTGTACCTGGGATCACCTGTAACCCTGTCCAGGGAGCCATGTACTCGTTCCCCAACATCAGCCTGCCTCAGAAAGCCATCAAAGAGGCGAAGGCTCTGGGCCAGGCACCGGACATGTTCTACTGTatgaagatgttggaggagacTGGCATCTGTCTGGTGCCGGGAAGTGGCTTTGGACAGAAAGACGGGACCTACCACTTCAGGATGACCATTCTGCCGCCCACAGACAAGCTGAAGCTCTTACTGGCTAAAGTGAAGGAGTTCCACCAGAAATTCACTCGGCAGTACTCTTAATCATCCTCCTTTAACTTCCTAACTTTCACCAAATCAGAAGAGAATAGGACACAGACCAATATGTGCACAATCTACCAGCCAACCTATCAGAAATCATCTGTCAATAAGTGCCTACATCTTCGGTCACCATGACAATGCACTTTAACTCCTAGGCCTACAAGATTCCAAGGAATGGTGGACTCACAGACTGTACATGTAAAAATGTAGTGGTTGTGAACACCAAGGAGACTTAGTTTGGAGTTgtagtttttttttatgttgggACATATCAAATTTATCTGACACACATAACTTGATTGAATTGATGTTCATTGTCACCTcggttgtgtgtctgtgcacaCACTTGTGTGGCATGATCACACAAGTCAAGGCCAGTATGACGGTACAGTacatttttagtcatttagcacacACTCTTaaccagagcaacttacagtagtgagaacatacattttcatactggtcccccatgggaatctaacccacaaccctggcgtcacaagcaccatgctctaccaactgagccacgctGGACTAGTAGTAGTGTATGAAATGGAAAGAGCTACTAGATTATTTCCAGACTCTGTAGAAATTGTTTTGTCAGTATTGTAGTAAGGTACTGTATAAGATAGTATTATGTAAGAGAAGCTTTCACATAATGATTTTAATTGAAATatgattttattacatttgctaCATAAATACAAAATTTTTGcctctttttttttgtgtggaacTTTCCGTCATAGTGCTAGACTTCCACAAGAGGGCACACTTGTCACAACCCATACATCTACTACAAAGAATGTCCTTGACTTTCAATTGAGTAGCTTACCTTCACATTCTTTAGACCAAATTCATGGAAAAAAACAG
>XM_021589123.2
AATGGGGAAATGAGGGGATGGAGGTTGGATAAAACTCACATGGGGGAGTAATGTTACAATGTATGTACTGTGCAGAAGACATACATTTCAGGTTGAAAATAGTGCCCCAGTCTGTGAATAACAGGGTTGTGGAAACTGTAAGGTACAAAGGTCTGGCcggctttaaaaaaatatttaaaagttTGCCAGTTGGACAACACAcagttgtctgtctgtgtgcattcATTGAGCGTGGGGGTGGTCGCAGCGCTTCACAACTAACGTAACGAGATATAATATTGTGACATGTCTGCTTCGCGCATAGGGCAAATGTTGTCATCCAAAAGTTTGCGCGTTATAACCAGAGGAAATTACCGTTTTTTCGGCAATGGGGCACAATACCCCGCGGGGCACCTCACCTCTGGTGTCCGCTCAGTGATGATCCCCTCTCCGCTGTCACCTTTCTCTTCCCAGAGTAGAGCACTTTCAGGAGTCAGTGAACCGCCGCGTGGACTTGTCCAAGAGAAAATGACCGAGAATGCAGTGTTCTCCCAGAACAAGGTTTTGACCATCGACACCATGAACCCCAATGTGAAGAATGTGGAGTATGCCGTGCGCGGACCCATTGTGCAGCGCGCGGTGCAGATCGAGAAGGAGCTGAGAGAGGGAGTGAAGAAGCCCTTCACTGAGGTCATCAAGGCCAATATCGGTGACGCCCATGCCATGGGCCAGCAGCCAATCACCTTCTTCCGCCAGGTCTTGGCACTCTGCTCCTACCCGGAACTCTTGAAGGACAATATGTTTCCAGAGGATGCCAAAAGCAGAGCGCGCCGCATTCTGCAGGCTTGTGGAGGGAGTAGTTTGGgtgcgTACAGTGCCAGTCAGGGTATAGACTGTGTGCGGCAGGACGTAGCTCGCTACATCGAGCGTCGGGACGGGGGCGTGCCCTGTGACCCAGACAACGTCTACCTCACCAGCGGCGCCAGCGACGGCATCGTGactaTGCTGAAGCTGTTGGTGTGTGGTGAGGGTGCGTCGAAGACAGGGGTGATGATCTCCATCCCTCAGTACCCTCTGTACTCGGCTGCTCTGGCTGAGCTGGGTGCTGTGCAGGTCAACTACTACCTGAACGAGGAGAAGTGCTGGAGCATGGACCTCAGTGAGCTGGAGCGCTCCCTAGCGGAGGCCAGGAAGCACTGCAACCCCAAAGTCCTCTGCATCATCAACCCTGGAAACCCCACTGGTCAGGTCCAGAGTAGACAGTGCATTGAGGATGTGATCCGATTCGCTGCTAAGGAGCATCTCTTCCTGATGGCTGATGAGGTGTACCAGGATAATGTGTATGCGGAGGGTTGTCAGTTCCATTCCTTTAAGAAGGTGCTGTTTGAGTTGGGACCACAGTACTCCAACACTGTAGAGCTGGTGTCTTTCCACTCCACCTCCAAGTGCTACATGGGAGAGTGTGGTTTCCGTGGGGGTTACATGGAGGTGATCAACATGGACCCAGAGGTGAAAGCCCAGCTCATTAAGCTGGTGTCGGTCAGACTGTGTCCCGCCGTCCCTGGTCAGGCTCTAATGGACCTGGTGGTCAACTCCCCACAGCCAGGAGAACCTTCCTACACCACCTTCATGAAGGAGCGAACAACAACCCTCAGTCTGCTGGCAGAGAAGGCCAAGTTGACAGAGGAAATTTTGAACACTGTACCTGGGATCACCTGTAACCCTGTCCAGGGAGCCATGTACTCGTTCCCCAACATCAGCCTGCCTCAGAAAGCCATCAAAGAGGCGAAGGCTCTGGGCCAGGCACCGGACATGTTCTACTGTatgaagatgttggaggagacTGGCATCTGTCTGGTGCCGGGAAGTGGCTTTGGACAGAAAGACGGGACCTACCACTTCAGGATGACCATTCTGCCGCCCACAGACAAGCTGAAGCTCTTACTGGCTAAAGTGAAGGAGTTCCACCAGAAATTCACTCGGCAGTACTCTTAATCATCCTCCTTTAACTTCCTAACTTTCACCAAATCAGAAGAGAATAGGACACAGACCAATATGTGCACAATCTACCAGCCAACCTATCAGAAATCATCTGTCAATAAGTGCCTACATCTTCGGTCACCATGACAATGCACTTTAACTCCTAGGCCTACAAGATTCCAAGGAATGGTGGACTCACAGACTGTACATGTAAAAATGTAGTGGTTGTGAACACCAAGGAGACTTAGTTTGGAGTTgtagtttttttttatgttgggACATATCAAATTTATCTGACACACATAACTTGATTGAATTGATGTTCATTGTCACCTcggttgtgtgtctgtgcacaCACTTGTGTGGCATGATCACACAAGTCAAGGCCAGTATGACGGTACAGTacatttttagtcatttagcacacACTCTTaaccagagcaacttacagtagtgagaacatacattttcatactggtcccccatgggaatctaacccacaaccctggcgtcacaagcaccatgctctaccaactgagccacgctGGACTAGTAGTAGTGTATGAAATGGAAAGAGCTACTAGATTATTTCCAGACTCTGTAGAAATTGTTTTGTCAGTATTGTAGTAAGGTACTGTATAAGATAGTATTATGTAAGAGAAGCTTTCACATAATGATTTTAATTGAAATatgattttattacatttgctaCATAAATACAAAATTTTTGcctctttttttttgtgtggaacTTTCCGTCATAGTGCTAGACTTCCACAAGAGGGCACACTTGTCACAACCCATACATCTACTACAAAGAATGTCCTTGACTTTCAATTGAGTAGCTTACCTTCACATTCTTTAGACCAAATTCATGGAAAAAAACAG

Function

NR:

description
alanine aminotransferase 2-like isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589124.2 False 2564 mRNA 0.49 12 11528149 11546135
XM_021589125.2 False 2559 mRNA 0.49 12 11528149 11546135
XM_021589123.2 True 2847 mRNA 0.49 11 11528325 11546135

Neighbor

gene id symbol gene type direction distance location
LOC118944828 NA coding upstream 9899 11516806 ~ 11518250 (+)
LOC110508545 gbg5 coding upstream 12327 11514203 ~ 11516782 (+)
ssx2ipa LOC106600421 coding upstream 14018 11501945 ~ 11514131 (+)
mcoln3a LOC106599955 coding upstream 28328 11493633 ~ 11499821 (+)
LOC110508540 LOC106600420 coding upstream 36990 11488248 ~ 11491159 (+)
LOC110508550 LOC106600426 coding downstream 101137 11647272 ~ 11702699 (+)
LOC110508551 LOC106600427 coding downstream 160696 11706831 ~ 11732636 (+)
LOC118944820 LOC106600427 coding downstream 188458 11734593 ~ 11739475 (+)
LOC118944888 LOC106600427 coding downstream 192140 11738275 ~ 11746300 (+)
LOC110508558 NA coding downstream 404568 11950703 ~ 11957556 (+)
G2104362 NA non-coding upstream 42373 11485570 ~ 11485776 (+)
G2104345 NA non-coding upstream 63374 11464529 ~ 11464775 (+)
G2104343 NA non-coding upstream 66604 11461073 ~ 11461545 (+)
G2104342 NA non-coding upstream 68012 11459537 ~ 11460137 (+)
G2104393 NA non-coding downstream 3353 11549488 ~ 11549814 (+)
G2104397 NA non-coding downstream 9636 11555771 ~ 11556004 (+)
G2104401 pter non-coding downstream 16677 11562812 ~ 11563335 (+)
G2104432 NA non-coding downstream 185045 11731180 ~ 11739467 (+)
G2104435 NA non-coding downstream 240511 11786646 ~ 11789526 (+)
G2103533 LOC105021892 other upstream 775189 10713576 ~ 10752960 (+)
G2103519 NA other upstream 825129 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 1005511 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 1136176 10391614 ~ 10391973 (+)
G2104555 NA other downstream 342981 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1298252 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1580827 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1587264 13133399 ~ 13133761 (+)
G2106549 NA other downstream 1587759 13133894 ~ 13134485 (+)

Expression


Co-expression Network