LOC110508550 (LOC106600426)


Basic Information

Item Value
gene id LOC110508550
gene name LOC106600426
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11647272 ~ 11702699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966310.1
CCTTCGAGCGCCTCGTATTGTGGAGCTACACAGCCTGGAGAGGAGGAGCTGTCAAACTTACAAGCAAAGGAAAAGTCCTTCAGTAGACGCCAGCTCACAGTTTCACTGTAAAGTTAGTTGAATTGTAGACCTAATTAGTATGGACTGACACAGTTTTCATTCGGAGAGGAAAAATGAAGACGAGTTTAAAAAATACCATGGCTACACAGTTTCAAATCTGGATCGTTTTCACCTCTTTAGTCTCCTTGGTCTCGTGTGCTTTACCGGAAAAGAAAGTATGCCAGGGCATCACTAACCGGTTCAGCCTTCTGGGGTCAAAAGAGGGCCACTACTTGAACATGGTCAAGACCTACAGCAATTGTACCATTGTCCTGGAGAACCTGGAGGTCACACACATGGAAGACCACCATGACCTGTCTTTCCTCAGGTCCATTCAGGAGGTGGGTGGCTATGTTCTGATCGCCCTCAACACAGCCAACAGGATTCCCCTGGACAACCTGCGCATCATCCGAGGCCACACTCTCTACAACGATGGCTTTGCCCTGGCTGTGTTGATGAACCATAATAAGTCAATGGGAGCAGGCACCACTGAGCTGCCTCTGACCAGCCTCACAGAGATCCTGAAAGGAGGAGTGAAGTTCTCAGGCAACCAGCTGTGTAACGTGGAGACCATCCAGTGGTTGGACATCGTGGACATTGACAGCAAACCCAACATGCAGTTACCTGAACCCAACAGAAATCGTCTCTGTAAAAATTGTGATCCTGGATGCTTCAATGGTTCATGTTGGGCGCCCGGCCCAGAACACTGCCAGACATTGACGAAGCTGAACTGTGCCCAGCAGTGCTCTAAGAGGTGTAAGGGTCCGTCTCCCATCGACTGCTGCAACGAACACTGTGCTGCAGGCTGCACTGGACCCAGACCTACAGACTGTCTGGCCTGCCGGGACTTTCAGGATGACGGGACGTGTAAAGACTCGTGTCCGCGCCTCCTGCTCTACGACCGCAACCTTCACCAACTAGTCAACAACCCAGACGGGAAGTACAACTTCGGGGCCACCTGCGTCAAGACCTGCCCTCatAACTATGTGGTGACAGACCATGGAGCGTGCGTTCGGACATGCAGTGGTGACACGTACGAAGTGGACGAGGGAGGAGTCAGGAAGTGCAAGAAGTGTGATGGACTGTGCCCCAAAGTTTGCAATGGACTTGGAATGGGGAAACTTGACAAAATTCTGTCAATCAACGCCACCAACATTGACACATTCAAAAACTGCACCAAAATCAATGGGAACATTGCTATTATCTACACGTCTATCCATGGGGACCCATTTACCAAAGCACCAAAGATGGATCCTGCCAAGCTAGACGTTTTCAAGACGGTCAGAGAAATCACTGGCTATCTGCTGATTCAGAACTGGCCCGAGAACATGACATCCCTCAGTCCCTTTGAAAACCTGGAGATTATTAGAGGACGGACCAAACATGGTACGGTGAGCTTGGCCATAACCCAGCTAACCATCACCCACCTGGGTCTTCGCTCGCTGAAGGAGATCAGCGATGGAGACGTGGTCATCACCAGGAACTCCAACCTCTGCTACACCAAGAAGCGCCACTGGAAGCAGCTGTTCAAGTCCGACAGGCAGACCATACAGCTGGAGAGCAATGCCCACGCAGCCGCATGCGGGCTGCAGAACAACACATGTGACACAATGTGTACCAGATATGGCTGCTGGGGACCTGGACCCACCATGTGTTTCGCCTGTCAGGACTACAGCCGAACAGGAAGCTGTGTAGACTCCTGTAACCTGctagagggGGAGCCACGTGAGACTGAAGTGAATAAGACGTGTGTGGAATGTCATCCTGAGTGTCAGCTCCTCAATGGAACCCAGACCTGCACTGGACCAggCCAAGAGCAGTGTACCCAGTGCGCTAACTTCAAAGACGGCAACAACTGTGTCCTGGGGTGCCCTAGAGGGGTGCCAGGGGTGGCAGGGGGCAAGAACACCTTCATCTGGAAGTATGCAGATAAGATGAAGgtgtgccagctgtgccaccagaacTGTACCCAGGGATGCACCGGTCCTGGTCTGAGAGGCTGTCAGTCTATAGGTAACTCTGGCCTATCGGTGATCGCGGCTGGTGTGGTGGGTGGGCTGCTTGCCTTCCTCATCATGGGCCTGTCTGTCTTCGTGTTACTGAGGCGACGCCACATCAAGAGGAAGAGAACCCTGCGAAGACTActccaggagagagagTTAGTTGAACCGTTGACCCCCAGTGGTGAGGCCCCCAACCAGGCTCTGCTCCGCATTCTCAAAGAGACCGAGTTTAAGAAGATCAAAGTGTTGGGATCAGGGGCCTTCGGCACTGTCTACAAGGGTCTGTGGGTCCCTGAAGGAGAGGACGTGAAGATTCCTGTGGCCATTAAGGTTTTAAGAGAGGCCACATCACCTAAAGCCAACAGGGAGATCTTGGACGAGGCCTATGTGATGGCCAGCGTGGACAACCCCCATGTGTGTCGTCTGCTGGGCATCTGCCTGACCTCCACAGTGCAGCTGGTCACCCAGCTCATGCCCTACGGCTGTCTGCTGGACTACGTCAAGGAGAACAAGGACAACATCGGATCCCAGTACCTCCTCAACTGGTGTGTGCAGATCGCCAAGGGGATGAGCTACCTGGAGGAGCGTCACCTGGTGCACCGTGACCTGGCAGCGAGGAACGTCCTGGTGAAGACCCCTCAGCATGTCAAGATCACGGACTTTGGCCTGGCCAAACTCCTCAACGCTGACGAGAAGGAGTACCACGCAGACGGAGGAAAGGTACCAATCAAATGGATGGCACTGGAGTCCATCCTCCACAGGAAATACACACATCAGAGTGATGTTTGGAGCTATGGTGTGACCGCGTGGGAGCTGATGACGTTTGGGACCAAGCCCTATGACGGGATCCCAGCCAATGAGATAGCAGGGGTGCTGGAGAAAGGAGAGCGGCTGCCCCAGCCCCCCATCTGTACCATAGACGTCTACATGATCATGGTCAAATGCTGGATGATCGACGCAGACAGCAGGCCTCGTTTCCGGGAGCTGATAGCTGAGTTTTCCAAGATGGCGCGGGATCCCCCACGTTACCTTGTCATCCAGGGTGACGACCGAATGCACCTCCCAAGTCCCACAGACACCAAGTTCTACCAGAGCCTAAtcagtggagaggacatggagGAAGCTGTGGACGCAGACGAGTACTTGGTACCTCAGCACAGCTTCTTCTCCAGCCCCAGTACCTCCCGTacccagctcctacactctatGAGCCAAAATAGCACATTGAACAGCAGCATTGGATTGTGCCACAGCAGAAATGAGAATGGGTTCCCTGTCAGAGAAGGAAGCATGGTTCTCCGGTACATTGCTGACCCCACAGACAGGTTCTTGGACCACGCCTTCCAGCCAGCTCCAGACTACATGAACCAGAATGGTGTGTCGGACATGATGAACCCTGTATACCAGCACCCCGGTCCCCCTCGcaccctcctccccaccatcTCCTCAGACGACACAGAGACAGAGTACCTGAACTGCTATAAGAATGAGGCAGTGGGGCCTGAGTACCTCAAcaccctccagccctctctcctctcccccaccacctccaaTGGCATCTCCCCCATCACCTCTAGTGGCCTCACCACCACCGCCAACAGCCTTTTCCCCATGTTCAATGGGCTCTCCTCCCCGAGCTCCAATGGCCTCTCCCCCACTTCCAATGGTGGTCTCCACTGCGTCCAGAAATACCAACCCCCGAACAGTATAGATAACCCAGACTACCAGCAGGACTTCACCCCTTCCGTCAAGACCCATGCCAACGGACACATCCCGGCCGCAGAGAACACAGAGTACCTAGGCCCAAACTGAGGCCTGTTATCCCCTACCTCCCACTGTGGATGAAAAGAGACACCGGGTAATAAGGCTCTCTATCCCACTGAGAGAAGACATAATGTCTTTGTTTAGCAGGGGTAGCGGTACCATGGACTGCTTTGCAATGTATTTATCCCTGCCTTAAACGAGCCAAGTGTGTGTGCTTTCTATTGTTCGCCACTTGTAGTACGGTACAGTGCTGCGAAAGTCTCCTCATTCCAAAAAATCGTCCATTTCAAATGGAGTCTGAGCTGATAGTTTGATGAGATGAGACAGAAACGAGGCTCTTGGTGTTTAACTCCATTGGGTGAAAAAGAGCAAGAGAATACCTTAGGCCTATACTTTCAGATGCTGTAGCCCATATCAGAAACCCATAGGTGTCATGTTGCACAAAGCAATGTTGTGATACGaaagaggagaaacaatattaCTAGACAAAATAGCGTATCATTCAATCCTTGAGATCAGATGCTCCCTGTGAAAGAAATGTAAAAACACTTATATGTCGGCGCACCCTTTACTTGCCAACACATAAACGGTACATGTACTAGAAGGTGGCACTGATACAGTATTGGTGTATTGAGTATATAGTATTGGGTATTTAGCTCCcacatctaaagggatggaaCTGTTAGAACAATAGTTGGACGTCTGAGCTCTTCTGTGTGGAACCTACAGTTTGAGACCTGCTGGAGTCAAATGTTGCTGATCGTTAAGTGTCGGAAGTGGGAAGGAGGAGGCCCTCATCGGAGTCTGATGGTGGCTGGTCCATGGAGGGCGTTGATGGAGGAACTTCTGAAACCTTACAGGACTCTTCCTAAAGAAGCGGTTGTTAAGTACACCTCTGTGGCAAATTGCTATTTTTTGCTATTGATGACTTTGCTGAAGGCTTTATAACTTTCATCATATGGCCAGATGGGAGAGACACTGGCCCCTGTTGGTGACCCATTGTAACTGCATCAACATTAGGACATCTGTGTTGCTTATTATTGTTTTGTACAGTAAGGCCTTTCGTTCTAACACTACAACTGTAAATCTTCTCACAGCTTTAAAGTCTTGCACTCTTGCAGGTGCTCAAACTTTCAAAATGAATCTCTTTCCTAGTTTTAAATGAACATATTAAATAGCTACTTGTCATTTGAGAGCCTGTTGTTTGACAGAGGTACATGTATAGATAAGTATGAAATGATGTTGTGTACAATATATTCAATTTGGCCACCTATAAATAATCCTATCAACATTCTTCATCTAGATGGTCTTGCCACTTTATATATAAATATGCAGTTATTGATGAACTGTAATTATTTCATTTCAAAGTGAAAATGAATTAAACGTATTTATATTTAA

Function

NR:

description
epidermal growth factor receptor-like

GO: NA

KEGG:

id description
K04361 EGFR, ERBB1; epidermal growth factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966310.1 True 5264 mRNA 0.50 27 11647272 11702699

Neighbor

gene id symbol gene type direction distance location
LOC110508546 LOC106600424 coding upstream 101137 11528149 ~ 11546135 (+)
LOC118944828 NA coding upstream 129022 11516806 ~ 11518250 (+)
LOC110508545 gbg5 coding upstream 131450 11514203 ~ 11516782 (+)
ssx2ipa LOC106600421 coding upstream 133141 11501945 ~ 11514131 (+)
mcoln3a LOC106599955 coding upstream 147451 11493633 ~ 11499821 (+)
LOC110508551 LOC106600427 coding downstream 4132 11706831 ~ 11732636 (+)
LOC118944820 LOC106600427 coding downstream 31894 11734593 ~ 11739475 (+)
LOC118944888 LOC106600427 coding downstream 35576 11738275 ~ 11746300 (+)
LOC110508558 NA coding downstream 248004 11950703 ~ 11957556 (+)
LOC110508559 LOC106600430 coding downstream 297802 12000501 ~ 12020205 (+)
G2104401 pter non-coding upstream 83937 11562812 ~ 11563335 (+)
G2104397 NA non-coding upstream 91268 11555771 ~ 11556004 (+)
G2104393 NA non-coding upstream 97458 11549488 ~ 11549814 (+)
G2104362 NA non-coding upstream 161496 11485570 ~ 11485776 (+)
G2104432 NA non-coding downstream 28481 11731180 ~ 11739467 (+)
G2104435 NA non-coding downstream 83947 11786646 ~ 11789526 (+)
G2104433 NA non-coding downstream 130957 11833656 ~ 11837226 (+)
G2104546 NA non-coding downstream 175370 11878069 ~ 11878289 (+)
G2104548 NA non-coding downstream 177026 11879725 ~ 11879988 (+)
LOC110508540 LOC106600420 other upstream 156437 11488248 ~ 11491159 (+)
G2103533 LOC105021892 other upstream 894312 10713576 ~ 10752960 (+)
G2103519 NA other upstream 944252 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 1124634 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 1255299 10391614 ~ 10391973 (+)
G2104555 NA other downstream 186417 11889116 ~ 11933092 (+)
G2106278 NA other downstream 1141688 12844387 ~ 12844904 (+)
G2106543 NA other downstream 1424263 13126962 ~ 13127231 (+)
G2106548 NA other downstream 1430700 13133399 ~ 13133761 (+)
G2106549 NA other downstream 1431195 13133894 ~ 13134485 (+)

Expression


Co-expression Network