gata6 (LOC106600428)


Basic Information

Item Value
gene id gata6
gene name LOC106600428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11836647 ~ 11843807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589142.2
TGAAtaatccttcctctcctcttttgtCTTCTATGTTTCAGTCCAGTCTTGGTAAAACATCTGGTTTCAGTGATCGTGCTCCTGGGTGCCAGTTGCGCAGAACCTAAATCATTTGGGGTATTGGTTTGTCACAATTACCCTGCCTCTTGGGTCTTATCTGTTATGCTTCTTATCAAGCGGTTATCACTTTGCTCCAAAGATATATTGCATTTTGTTCCTATCTGTAACGGTGTGTGGTTTTTTTGTAATTATGAAGAGGCTATCTCGAGAGGGGAGGACAAGGTTTTGACACGGATGGATTCAACTCCTCCGGTCAGAGCGCGCGGTGTGCTTACATTTCTAATGGATTAATACCTTAGGTGGTATTGCCAAACACGTCGTAACTATTAGTCTATAACCATCATATAGTTTTAATAGTGAGGATCGAGTATTGTGTGCTAAGTAACCTAGCCTTTCGCCTATCATTTTGTGTCATGTACTCAAAATTACGCGAATACGTTTCAAAATGAAACCAAGCCCCACATCAAGGGCTATGTTGGGTTTGTATTACGCAGTTTCCCAGAGGGGCAGACAACACCCTCACGATTTTCTAGCCCTACGGTGTATGGAAAGTGATCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCAAGAAGTGTCCAGCAGCCCAGGGTCACCGGCTGAACAGAGCTACTTACACGGCGGTCAGGACAGGAGGGACAGTCACGGCCACGCGCACGACTCGGAGGGACTCAGGTCACCGCCGACAACCGATCAACTTGACTTAGTGGGACACCGGCGCGACGAGGGGCCAGGTAGACCATCTCTACACTCCTACGTTCACTTCGGACACGGACACCATAACAACAACACTGCCCTGCCCACCACAGAGGACATCGCGCTGTTCACGGATTTAGACCAGGGCAACAAACTAATCATCTCTAGTGGAGCGCACCCGCACCACAAGGGGGGCCTTATCGTCGACCCCAGCGACATGTATCAAACACTAGCCATCGCCGCGGCCCACCAGAGCCAGGCGGGGTACGACTCGCCCTCTGGGGGCTATATGCACTCCAACCCCAACTCTCCAGTGTATGTACCGAGCTCCCGGGTGGGACCCATGATATCCAGCCTCCCTTATTTGCAAGCCAGCGGGTCGGCACAGCCTAGTCATGCGATCACAAGCCATTCAGTCTGGTCGCAGTCTACTCCGGAGAGTCCCTCCTACAGCACCGGGAGTCCTCATACCTCCAACCGTTTCCATTACCCTCCAAGCCCGCCAATGAACAACGTAGCGTCCAGGGATAACGGCTACAGTAACCCGCTGAATGTGGGCAGTCGAGACCAGTACGGTCTCCCGCGGCCCCTCGGTGGATCCTACGCCAGTCCCTACTCCCCGTATGTTGGACCGCAGCTAACCCAGTTGTCCTCGCCTTGGCCTGGAGGACCATTCGATAACACCATGTTGCACACTTTGCAAAGCAGAGGTGCGCCCTTGACGATTCGAGGACCCAATGGAGATATTCTCGACGacctgggagagagcagggaATGCGTCAACTGCGGCTCCATCTCAACGCCGCTCTGGAGACGGGATGGCACGGGCCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAATGGACTCAGTCGGCCATTAATTAAACCACAGAAGCGGATGTCATCATCCCGGCGAATCGGCCTCTCCTGCGCCAACTGTCAGACGAGCACAACCACCTTGTGGCGCAGAAACGCAGAAGGAGAACCGGTCTGCAACGCATGTGGGCTCTACACAAAATTACATGGAGTACCTCGGCCGCTCGCCATGAAGAAAGAGGGAATTCAGACGAGGAAAAGAAAACCTAAAACTTTGAACAAAACCAAGGGATCCTCTGGAAATAGTAATTCAGTCGCCATGACTCCGACGTCGACGTCTTCTTCCAACTCTGAAGACTGCTCGAAGAACAGCTCTCCCAACACGCAGGTCCAGTCCTCTGTCCTGAGTGGACCAGCGGATGGCTCAGGCTCTGATGGCTCTGCCGTCGTGAAGTACCCAGGCCAGGATAGTCTCTACACCAGCGTGGGCCTCACCCAGTCTCCAGACATAGCCGGCTCCGTCAGGGGAGAGTCCTGGTGCCCCATGGCTCTTGCCTGAGTCACGAGCTGGGGATGGAACCCACCacactatcctctctctctctctctggatgtcCTGCTGTTGTGTGGTGGAAATATTCTGTGCCTTGATGGTTCTGGGTCTGTTTCCTACTTCCCAGCTAACAACAGTTGGACagagacagcccccccccccctccctccacgctCATGCAAGTTTGAAACGTCTGTGGAATATTTGGGATTGATTTCCAGAATTATATGAGAAAACCTTAGTGCCTTAACAGCAAGGGAAATATGTGAGAGGAGGCCTGTTGATGCATTCTTGACACTGCAGTTCGGATGTGTTCCGGACCGacctgctgttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatc
>XM_021589141.2
CTCCTCTCTAAAAACCTCGTCAAGCGCGCAGTAGGCTAACGCTTTCATTCCTATCTTCCCAGAGACCAGCTACGACCCAGACACTATAGGAAACTTCAACGAGCGACCGATGGCACAGAACGAGGCAGACAACACCCTCACGATTTTCTAGCCCTACGGTGTATGGAAAGTGATCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCAAGAAGTGTCCAGCAGCCCAGGGTCACCGGCTGAACAGAGCTACTTACACGGCGGTCAGGACAGGAGGGACAGTCACGGCCACGCGCACGACTCGGAGGGACTCAGGTCACCGCCGACAACCGATCAACTTGACTTAGTGGGACACCGGCGCGACGAGGGGCCAGGTAGACCATCTCTACACTCCTACGTTCACTTCGGACACGGACACCATAACAACAACACTGCCCTGCCCACCACAGAGGACATCGCGCTGTTCACGGATTTAGACCAGGGCAACAAACTAATCATCTCTAGTGGAGCGCACCCGCACCACAAGGGGGGCCTTATCGTCGACCCCAGCGACATGTATCAAACACTAGCCATCGCCGCGGCCCACCAGAGCCAGGCGGGGTACGACTCGCCCTCTGGGGGCTATATGCACTCCAACCCCAACTCTCCAGTGTATGTACCGAGCTCCCGGGTGGGACCCATGATATCCAGCCTCCCTTATTTGCAAGCCAGCGGGTCGGCACAGCCTAGTCATGCGATCACAAGCCATTCAGTCTGGTCGCAGTCTACTCCGGAGAGTCCCTCCTACAGCACCGGGAGTCCTCATACCTCCAACCGTTTCCATTACCCTCCAAGCCCGCCAATGAACAACGTAGCGTCCAGGGATAACGGCTACAGTAACCCGCTGAATGTGGGCAGTCGAGACCAGTACGGTCTCCCGCGGCCCCTCGGTGGATCCTACGCCAGTCCCTACTCCCCGTATGTTGGACCGCAGCTAACCCAGTTGTCCTCGCCTTGGCCTGGAGGACCATTCGATAACACCATGTTGCACACTTTGCAAAGCAGAGGTGCGCCCTTGACGATTCGAGGACCCAATGGAGATATTCTCGACGacctgggagagagcagggaATGCGTCAACTGCGGCTCCATCTCAACGCCGCTCTGGAGACGGGATGGCACGGGCCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAATGGACTCAGTCGGCCATTAATTAAACCACAGAAGCGGATGTCATCATCCCGGCGAATCGGCCTCTCCTGCGCCAACTGTCAGACGAGCACAACCACCTTGTGGCGCAGAAACGCAGAAGGAGAACCGGTCTGCAACGCATGTGGGCTCTACACAAAATTACATGGAGTACCTCGGCCGCTCGCCATGAAGAAAGAGGGAATTCAGACGAGGAAAAGAAAACCTAAAACTTTGAACAAAACCAAGGGATCCTCTGGAAATAGTAATTCAGTCGCCATGACTCCGACGTCGACGTCTTCTTCCAACTCTGAAGACTGCTCGAAGAACAGCTCTCCCAACACGCAGGTCCAGTCCTCTGTCCTGAGTGGACCAGCGGATGGCTCAGGCTCTGATGGCTCTGCCGTCGTGAAGTACCCAGGCCAGGATAGTCTCTACACCAGCGTGGGCCTCACCCAGTCTCCAGACATAGCCGGCTCCGTCAGGGGAGAGTCCTGGTGCCCCATGGCTCTTGCCTGAGTCACGAGCTGGGGATGGAACCCACCacactatcctctctctctctctctggatgtcCTGCTGTTGTGTGGTGGAAATATTCTGTGCCTTGATGGTTCTGGGTCTGTTTCCTACTTCCCAGCTAACAACAGTTGGACagagacagcccccccccccctccctccacgctCATGCAAGTTTGAAACGTCTGTGGAATATTTGGGATTGATTTCCAGAATTATATGAGAAAACCTTAGTGCCTTAACAGCAAGGGAAATATGTGAGAGGAGGCCTGTTGATGCATTCTTGACACTGCAGTTCGGATGTGTTCCGGACCGacctgctgttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatc
>XM_021589140.2
ATTCCAACTGCAGCCTCGAGAAGCGCCTCCTCTCTAAAAACCTCGTCAAGCGCGCAGTAGGCTAACGCTTTCATTCCTATCTTCCCAGAGACCAGCTACGACCCAGACACTATAGGAAACTTCAACGAGCGACCGATGGCACAGAACGAGTAGGGCAGACAACACCCTCACGATTTTCTAGCCCTACGGTGTATGGAAAGTGATCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCAAGAAGTGTCCAGCAGCCCAGGGTCACCGGCTGAACAGAGCTACTTACACGGCGGTCAGGACAGGAGGGACAGTCACGGCCACGCGCACGACTCGGAGGGACTCAGGTCACCGCCGACAACCGATCAACTTGACTTAGTGGGACACCGGCGCGACGAGGGGCCAGGTAGACCATCTCTACACTCCTACGTTCACTTCGGACACGGACACCATAACAACAACACTGCCCTGCCCACCACAGAGGACATCGCGCTGTTCACGGATTTAGACCAGGGCAACAAACTAATCATCTCTAGTGGAGCGCACCCGCACCACAAGGGGGGCCTTATCGTCGACCCCAGCGACATGTATCAAACACTAGCCATCGCCGCGGCCCACCAGAGCCAGGCGGGGTACGACTCGCCCTCTGGGGGCTATATGCACTCCAACCCCAACTCTCCAGTGTATGTACCGAGCTCCCGGGTGGGACCCATGATATCCAGCCTCCCTTATTTGCAAGCCAGCGGGTCGGCACAGCCTAGTCATGCGATCACAAGCCATTCAGTCTGGTCGCAGTCTACTCCGGAGAGTCCCTCCTACAGCACCGGGAGTCCTCATACCTCCAACCGTTTCCATTACCCTCCAAGCCCGCCAATGAACAACGTAGCGTCCAGGGATAACGGCTACAGTAACCCGCTGAATGTGGGCAGTCGAGACCAGTACGGTCTCCCGCGGCCCCTCGGTGGATCCTACGCCAGTCCCTACTCCCCGTATGTTGGACCGCAGCTAACCCAGTTGTCCTCGCCTTGGCCTGGAGGACCATTCGATAACACCATGTTGCACACTTTGCAAAGCAGAGGTGCGCCCTTGACGATTCGAGGACCCAATGGAGATATTCTCGACGacctgggagagagcagggaATGCGTCAACTGCGGCTCCATCTCAACGCCGCTCTGGAGACGGGATGGCACGGGCCACTTTCTCTGCAACGCCTGCGGCCTGTACAGCAAAATGAATGGACTCAGTCGGCCATTAATTAAACCACAGAAGCGGATGTCATCATCCCGGCGAATCGGCCTCTCCTGCGCCAACTGTCAGACGAGCACAACCACCTTGTGGCGCAGAAACGCAGAAGGAGAACCGGTCTGCAACGCATGTGGGCTCTACACAAAATTACATGGAGTACCTCGGCCGCTCGCCATGAAGAAAGAGGGAATTCAGACGAGGAAAAGAAAACCTAAAACTTTGAACAAAACCAAGGGATCCTCTGGAAATAGTAATTCAGTCGCCATGACTCCGACGTCGACGTCTTCTTCCAACTCTGAAGACTGCTCGAAGAACAGCTCTCCCAACACGCAGGTCCAGTCCTCTGTCCTGAGTGGACCAGCGGATGGCTCAGGCTCTGATGGCTCTGCCGTCGTGAAGTACCCAGGCCAGGATAGTCTCTACACCAGCGTGGGCCTCACCCAGTCTCCAGACATAGCCGGCTCCGTCAGGGGAGAGTCCTGGTGCCCCATGGCTCTTGCCTGAGTCACGAGCTGGGGATGGAACCCACCacactatcctctctctctctctctggatgtcCTGCTGTTGTGTGGTGGAAATATTCTGTGCCTTGATGGTTCTGGGTCTGTTTCCTACTTCCCAGCTAACAACAGTTGGACagagacagcccccccccccctccctccacgctCATGCAAGTTTGAAACGTCTGTGGAATATTTGGGATTGATTTCCAGAATTATATGAGAAAACCTTAGTGCCTTAACAGCAAGGGAAATATGTGAGAGGAGGCCTGTTGATGCATTCTTGACACTGCAGTTCGGATGTGTTCCGGACCGacctgctgttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatc

Function

NR:

description
GATA-binding factor 6-B-like

GO: NA

KEGG:

id description
K17897 GATA6; GATA-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589142.2 False 2565 mRNA 0.53 7 11836647 11843646
XM_021589141.2 False 2123 mRNA 0.56 7 11836647 11843781
XM_021589140.2 True 2153 mRNA 0.56 7 11836647 11843807
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508552 cables1 coding downstream 50547 11754075 ~ 11786100 (-)
LOC110508549 LOC106600425 coding downstream 204906 11590108 ~ 11631741 (-)
LOC110508547 pter coding downstream 264180 11556591 ~ 11572467 (-)
LOC110508543 LOC106600422 coding downstream 318201 11515554 ~ 11518446 (-)
LOC110508539 NA coding downstream 372569 11459373 ~ 11464078 (-)
mib1 LOC106600429 coding upstream 62319 11906126 ~ 11994814 (-)
LOC110508560 LOC106600431 coding upstream 183220 12019354 ~ 12129830 (-)
thoc1 LOC106600433 coding upstream 378287 12222094 ~ 12230902 (-)
LOC110508565 LOC106600435 coding upstream 401983 12245790 ~ 12248509 (-)
myl13 LOC100194663 coding upstream 666873 12510680 ~ 12515518 (-)
G2105613 NA non-coding downstream 10112 11826087 ~ 11826535 (-)
G2105591 NA non-coding downstream 46829 11789171 ~ 11789818 (-)
G2105514 NA non-coding downstream 90366 11677574 ~ 11746281 (-)
G2105568 NA non-coding downstream 92316 11737167 ~ 11744331 (-)
G2105533 NA non-coding downstream 151268 11684745 ~ 11685379 (-)
G2105641 NA non-coding upstream 39241 11883048 ~ 11885307 (-)
G2105642 NA non-coding upstream 42094 11885901 ~ 11886194 (-)
G2105643 NA non-coding upstream 42686 11886493 ~ 11887271 (-)
G2105660 NA non-coding upstream 80658 11924465 ~ 11988217 (-)
G2105721 NA non-coding upstream 174227 12018034 ~ 12059826 (-)
G2105419 LOC104953893 other downstream 336575 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 942567 10886198 ~ 10894141 (-)
G2103920 NA other downstream 1128148 10708012 ~ 10708499 (-)
G2103257 NA other downstream 1629971 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1721250 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 3695961 15539768 ~ 15554897 (-)
G2109705 NA other upstream 3759878 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 3859529 15703333 ~ 15793545 (-)
G2110939 NA other upstream 4955583 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 5412401 17254319 ~ 17260420 (-)

Expression

gata6(LOC106600428) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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gata6(LOC106600428) Expression in each Bioproject

Bar chart with 19 bars.
gata6(LOC106600428) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network