LOC110508565 (LOC106600435)


Basic Information

Item Value
gene id LOC110508565
gene name LOC106600435
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12245790 ~ 12248509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589158.2
GCTTGTTGATGATGTTTTTGAGTTCCACTGACACACCACACTACATCCCATCTCTGAGAGGAACATCATAGGCCCAGGTTGCAGCCAAGATGAGAGAATTCAAGAGCAAGGCTTTCTGGAGGGCCGTACTGGCCGAGCTCGTGGGGATGACCATGTTCATATTCCTCAGCATCTCGGCTGCCATTGGGAACTCAAACAACACTTCTCCTGACCAGGAGGTGAAGGTTTCTCTGACTTTTGGTCTGGCCATCGCCACGCTGGCCCAGAGTTTGGGCCACATCAGTGGAGCCCACCTGAACCCAGCAGTGACACTGGGCATGCTCGCCAGCTGCCAGATCAGTGTGTTCAAGGGGGTGATGTACATCGTGGCTCAGATGCTAGGCTCTGCACTGGCCAGTGGTATTGTCTATGGAACCCGGCCAGAGGGAAATGCTGCACTGGGGGTCAACGCTCTAAATGGTGTCTCTGCCAGCCAAGGCGTTGGCATCGAGCTCCTGGCTACCTTCCAGCTGGTCCTGTGTGTCATAGCTGTCACTGATAAAAGGCGGCACGACGTCACCGGCTCTGCCCCCCTGGCCATTGGGCTCTCTGTCGCTCTGGGACACTTGGCAGCCATCAGCTACACTGGCTGCGGTATCAACCCTGCCCGATCCTTTGGACCTGCTTTGATCATGAATGATTACACAAACCACTGGGTGTACTGGGTGGGGCCAATGTGCGGAGGTGTGGCAGCTGCTCTGGTCTATGACTTCCTGCTGTACCCCAAGTTTGATGACTTCCCTGAACGCATGAGGGTCCTGGTCAGTGGCCCTGTGGGAGACTATGATGTCAATGGAGAAGAGACCGCAGCAGTAGAAATGTCATCAAAGTAGTATTGTGAGAGAAACACCATAGAGTGTATAGTACCTTGGATATCTAACTATACTCCTGTAaagaaaacatttacatttcCTTTAGAATGGGAGCAGTTCATTTGTTATTTCAAAATACTGATCATGAATTTGAAAGAATTCATTACTGAACTACCGATTAGTATCCAAAATGAACTTAAGTAGCCTATTCActaacatttattaaacatatttcTTTATACAAGAATTGTTGGAACATCTTGCTCTTTGTTAAAATATTTCCCCTATCAGTattctatatactgtacagaGTCATTTGTTTTTGTATATTTTCTATATTACTGTTTTATGTATAAACATTTTATTTCTTGATGTATAAAGTTTATATTTCTGTTTGCAATCTTGAATTGTCTTTCACTTTTGTAAGTAAATAAAACACCAGATGTACCCCT

Function

NR:

description
aquaporin FA-CHIP-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K09864 AQP1; aquaporin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589158.2 True 1303 mRNA 0.46 4 12245790 12248509
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Neighbor

gene id symbol gene type direction distance location
thoc1 LOC106600433 coding downstream 14888 12222094 ~ 12230902 (-)
LOC110508560 LOC106600431 coding downstream 115960 12019354 ~ 12129830 (-)
mib1 LOC106600429 coding downstream 250976 11906126 ~ 11994814 (-)
gata6 LOC106600428 coding downstream 401983 11836647 ~ 11843807 (-)
LOC110508552 cables1 coding downstream 459690 11754075 ~ 11786100 (-)
myl13 LOC100194663 coding upstream 262171 12510680 ~ 12515518 (-)
LOC110508569 LOC106569331 coding upstream 390002 12638511 ~ 12666401 (-)
ccdc13 ccdc13 coding upstream 429315 12677824 ~ 12688016 (-)
LOC110508576 LOC106599876 coding upstream 497510 12746019 ~ 12750292 (-)
LOC110508577 LOC106599874 coding upstream 685728 12934237 ~ 12968139 (-)
G2105774 NA non-coding downstream 131497 12114026 ~ 12114293 (-)
G2105773 LOC106600457 non-coding downstream 133298 12112258 ~ 12112492 (-)
G2105769 NA non-coding downstream 140526 12105038 ~ 12105264 (-)
G2105721 NA non-coding downstream 185964 12018034 ~ 12059826 (-)
G2105867 NA non-coding upstream 21858 12270367 ~ 12285271 (-)
G2106000 NA non-coding upstream 234367 12482876 ~ 12483108 (-)
G2106001 NA non-coding upstream 235178 12483687 ~ 12484085 (-)
G2106002 NA non-coding upstream 235740 12484249 ~ 12484454 (-)
G2106003 NA non-coding upstream 236404 12484913 ~ 12485205 (-)
G2105419 LOC104953893 other downstream 745718 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 1351710 10886198 ~ 10894141 (-)
G2103920 NA other downstream 1537291 10708012 ~ 10708499 (-)
G2103257 NA other downstream 2039114 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 2130393 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 3291259 15539768 ~ 15554897 (-)
G2109705 NA other upstream 3355176 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 3454827 15703333 ~ 15793545 (-)
G2110939 NA other upstream 4550881 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 5007699 17254319 ~ 17260420 (-)

Expression

LOC110508565(LOC106600435) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110508565(LOC106600435) Expression in each Bioproject

Bar chart with 20 bars.
LOC110508565(LOC106600435) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network