ccdc13 (ccdc13)


Basic Information

Item Value
gene id ccdc13
gene name ccdc13
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12677824 ~ 12688016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589166.2
AGGAGGGACCCGTTGCCATGGATACACTAGCGTTCGATCGGACGAGGAAGTGTACCAATACCAAAACAGCTCTACACACGTTTCGTGAACTGTGACATGTCAAGCTTATAACCACAGATATTTCAATTGTTCAGCAACCTGTGTATTGTTATGTTGTAGCTCGACGCAGAACGTTGTTACAAAGGGACTGGAATTTCTGGGTTGGACATTTCTGTACAACATGGAAGAAGATGATGGACTAAAGGATAACCTTCGTCTACAGTTCCAGGCTCTGCAGGAGCAACAAGAGAAGCGTCTCCAGAGAAGACTAGAGAAACAGAAGAAGGAGCAGAAGGCCACTGAGATCCAGGACAATCTGGACCTGTCCCAGCTAGACATTCATCACGAGGATGATTGTAGTAAAACGCTGTTACAGAATGAAAATGAACAGTTGCAGGACCAGGTGAGGGAGCTGAGGGATGAAAATGGCCGACTATTCAAACTAGTGAGCGAGAAAGACTTTGAGATTAAACATctgaagaagaagagggaggaagacaggctGGCTTTAGCAGGTACATCTGGCTTGGCGGGAGATGCGGCAGCTACCAAGATTGTTGAGCTTTCTAAGAGGAATCGAGAGTTTGCTTCTGAACTGGAACGAGAAAAAGTTAAAGCAAAACAAACTAGCAACAGAGTGAAAGAGCTTGAGAAAGAGCTCCAGAGTGCTTTGTTGCTTAGTCCTCCTGGGAAGAAGATGGATGTAAAGCCACAAGACATGAGGTCATCCCAGGACTTCCAGGAGATCAGTCCAGTGGTAAAATCTCTACAGGAAAAACTATCTGCTGCACAATTCAAGATGACAGAATATCGAAACCAGATTCAAGCTGTCAAGCAGGAATTGAAAATAGCTCAGAAGGTGTTATCCAGTGAGATAGGAGAGGAAGTCAGCATCCAGCAGCTACTGACCAGCCCAGGGAACTGGAGAGGTCGCTCCCAGCAGATACTGGCTCTCCAGATTAGGGTTCGGGACCTGGAGCAGCAGCTGAGCCAATCAGCTCAGAGGAAGCAGCCGTCATTCGTCAGCGTTGAAGAGGATCTACTGTGGGGCGGGGCCTTGCAGAAGACACCCCCCCAGGACAGGAACCTCAGCTACATCCGcaatatggagagggagaagagagaaactCTGGAGAGGATGACGGGGGACTATGATTCCCTCATGAAGGACCACAAGGATGTGAAGAAGAAGCTGGAGGGCTCCAAGGCCAGGAACAAAAACCTGGGCACTGAGGTGAAATCACTAAAGACCCAGATCTCCACCCTGCTGGACAAAGGAAAGCATGATGATGAGCTGGTGGATGCCTTACTGAAGCAGCAGAGCCAGCTGCAGGAGGTGCTGGGCAGGCTGAGCCAGCAGGACGCGCAGACTAAGGAGAGCCAGCAGAACCTAGGGCAGCAGCTGAGCAGCGAGGCCCAGAGACACACATCCCTCATCCAGCAGCTCAAACACATGGTCTTCGAGAGGGAGGCCAAAGTGAAAGAGCTGGAGGACGAGATACAGCAACTGTCCTTAAAGAGAGAGGAAGGCGGTCAATCAGGCCCCAAGATGACCACTGGCAGCTTCTGGCCTTTGACAGCAGGGGGAGACAGCAGTAAGAGGATTAGCTCAGCCCGTTCAGTATCTAAACTTGGACATAAACTAGTGGAGTCAGCAGCTGGGGTCAGTTTAGAGGTCAGAGATGCAGGAGCTCCTTCGGGTTGTCAGAACTGTTCAGAGGAGGTGAGGTACCTGAAGGCAGAGTGTACAGAGTTTCGGACCCTTTGTGAGGCTGCCTGTGTGGAGAGAGATAGGCTCCTAGAGCTTGTCAAGCTCCAGCAATCCAGggaggaggaagggaagcagAGGTGCCTAGGGACAGAGCAAAAATTCCAAGGAGAACGCAGAAGGGCCGTAGCCCTAGAGCAGCAGCTAGAAAAAGCAAAGCTGGATCTGGGCAAAGGATTGACTCCCAGAAAAACTAGCAACAAGGGCACTGGAGGAGCCTTGTCTAGTGGGAGACAGAGGGAATCATCATCCCCTCGAAGCCCTCCTGACCTTTCCAGGGAGGCCCAAGTCATTGAACTAAGTACCCAGCTGGCGGTGCTGCAGGGGGAGAACGAGGCTCTGAGGGCTGAGCTGAGGAGCACTCTCCAGGCCAAGGCTGAGGACCTGCAGCTCTGCAGTGACATGATGAACCAAGTCAAGCACGTCTTTCTGCAGGCGCTGCGACAACACaagcaggacagagacacaaaCCAGGAGAATTAGTTAGCTAGCTGTATTAAAGGCCCTGGCTGCTTAACCTGTTGGACTTCAACCACGTCCCCAAAAAACCTTAAGTTCCTCTTGTCCAGTCATATCAACTCTGAGGAAGGACAGGAATGGAGCAGGCCTGTCTTCTTCAGCAATACAATGTAATTACTGGTTCCTGGTTTCCTGACTGCTTCCTGCTAACTCTGTTGACCACGAAAAGACGACAACCTGCTTTGATTGCCCCCATGTAGTGAATATGAGTAAGCCAATCAAAGCCAACTTGGCACCTGCGGACCAAAAGGTTTATCAACTTTGACATGAAGATGTTACACAGTGGTTCCTATTGTTGATTGCATGACTGGTCAGTGCATATAGAATGTGTCTGCATTATTTGATGTGTATGCATGGACTTGTCCATAGGTGTTTTTCTTTTCTAAATGTCACTGTCATGTCAAACTTGTGTCGTCGTCTTAGCACCTGTGTTTGTAAGATATAGTATAGAGGGCCGCAGTGTGTTTGTAAGATATAGTACAGAGGGCCACAGTGTGTTTGTAAGATATAGTACAGAGGGCCACAGTGTGTTTGTAAGATATAGTACAGAGGGCCGCAGTGTGTTTGTAAGATATAGTACAGAGGGCCGCAGTGTGTTTGTAAGATATGGTACAGAGGGCCGCAGTGTGTTTGTAAGATATAGTACAGAGGGCCGCAGTGTGTTTGCAACACACATCACAGTTAAGATGCTAATGTTTAGTTAGGGCTTTATTCAATCCATATCGCTGAAGATCTGTTTCAGAACACATTGAcaattaaaggcaatgttccctgCTGtctcacggtaaacgctgcatatcaaatcacattttatttgtcacataggccaaatacaacaggtgta

Function

symbol description
ccdc13 Predicted to be involved in cytoplasmic microtubule organization and non-motile cilium assembly. Predicted to be active in centriolar satellite. Orthologous to human CCDC13 (coiled-coil domain containing 13).

NR:

description
coiled-coil domain-containing protein 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589166.2 True 3170 mRNA 0.49 16 12677824 12688016

Neighbor

gene id symbol gene type direction distance location
LOC110508569 LOC106569331 coding downstream 11423 12638511 ~ 12666401 (-)
myl13 LOC100194663 coding downstream 162306 12510680 ~ 12515518 (-)
LOC110508565 LOC106600435 coding downstream 429315 12245790 ~ 12248509 (-)
thoc1 LOC106600433 coding downstream 446922 12222094 ~ 12230902 (-)
LOC110508560 LOC106600431 coding downstream 547994 12019354 ~ 12129830 (-)
LOC110508576 LOC106599876 coding upstream 58003 12746019 ~ 12750292 (-)
LOC110508577 LOC106599874 coding upstream 246221 12934237 ~ 12968139 (-)
LOC110508580 LOC106599867 coding upstream 378799 13066815 ~ 13081622 (-)
obscnb obscn coding upstream 416062 13104078 ~ 13208077 (-)
LOC110508585 LOC106599848 coding upstream 552546 13240562 ~ 13262111 (-)
G2106112 NA non-coding downstream 34779 12641054 ~ 12643045 (-)
G2106014 NA non-coding downstream 175303 12498641 ~ 12502521 (-)
G2106015 NA non-coding downstream 181397 12496140 ~ 12496427 (-)
G2106011 NA non-coding downstream 184800 12492703 ~ 12493024 (-)
G2106009 NA non-coding downstream 186953 12490636 ~ 12490871 (-)
G2106138 NA non-coding upstream 47090 12735106 ~ 12736458 (-)
G2106182 LOC106599880 non-coding upstream 63900 12751916 ~ 12753070 (-)
G2106225 NA non-coding upstream 119893 12807909 ~ 12808139 (-)
G2106277 NA non-coding upstream 155280 12843296 ~ 12843706 (-)
G2106279 NA non-coding upstream 156380 12844396 ~ 12844874 (-)
G2105419 LOC104953893 other downstream 1177752 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 1783744 10886198 ~ 10894141 (-)
G2103920 NA other downstream 1969325 10708012 ~ 10708499 (-)
G2103257 NA other downstream 2471148 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 2562427 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 2851752 15539768 ~ 15554897 (-)
G2109705 NA other upstream 2915669 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 3015320 15703333 ~ 15793545 (-)
G2110939 NA other upstream 4111374 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 4568192 17254319 ~ 17260420 (-)

Expression


Co-expression Network