LOC110508577 (LOC106599874)


Basic Information

Item Value
gene id LOC110508577
gene name LOC106599874
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12934237 ~ 12968139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589178.2
GAGCGCAAAATTCTTCTCTGTATAAGAAGTGCCGAACGTACAACAAGGGATTTTACACAGCTACTCAGGAGAAACGAAATGATCTGCCTTGGAGCCGCAGCAAAATGCTGGATGGACAGCTACTCCTGGGATGGTTATCGTTCACAGTTATAGTGTACCTCTTCAACTTGCCCGGACCGACCACAGCGTATTTCGGATTGACAGGTAATGAACCCCTGTCCATTCTACCGCTGAGCTCTCAACCTGAGGAGAACGTGGGAAGGGCCCACTACAAGCTGTGCGACCGGCTCAAACTGGAGAAGAAACAGCGGCGGATGTGTCGACGAGACCCGGGCGTGGCCGAGACCCTCATGGAAGCCATCAGCATGAGTGCCCTGGAGTGCCAGTACCAGTTCCGCTTTGAGAGGTGGAACTGCACCTTAGAGGGGCGCTACAGAGCCAACCTTTTGAAAAGAGGTTTTAAGGAGACAGCCTTCCTGTATGCCGTCTCCTCAGCAGGCCTGACTCACGCCATGGCCAAGGCGTGTAGCGCCGGGCGGATGGAGCGTTGCACCTGCGATGAAGCCCCAGACCTGGAGAACCGCAAGGCCTGGCAGTGGGGCGGTTGTGGTGACAACCTGAAGTACAGCAACAAGTTTGTCAAGGACTTCCTGGGCAAACGCTCCAACAAGGACCTGCGTGCCCGCGTGGACATGCACAACACTAACGTGGGCATGAAGGTGATCAAAGCAGGGGTGGAGACCACCTGCAAATGCCATGGCGTCTCGGGCTCCTGCACCGTCCAGACGTGCTGGAGGCAGCTCTCGCCCTTCCACGAGATCGGCAAGCAGCTGAAACAGCGCTACGAGACCTCATTGAAGGTGGGCAGCTCCACCAACGAGGCCACGGGGGAGGGGGAAATCTCCCAGGCCCGGCCCCAGCAGCAGCAGAACCCCTCAACGGGCCCCAGCAACGACCCGATCCCACGCACCATGGACCTGCTCCACATCGAGGACTCGCCCAGCTTCTGCCGGCCCAGCAAGTACTCGCCGGGCACCTCGGCCAGGAAGTGCTACAAGGACAAGAACTGCGACGCCATATGCTGCGGCAGGGGCCACAACACCCAGAGCCGCGTGGTGACCCGGCCATGCCAGTGTCAGGTGCGCTGGTGCTGCTACGTCGAATGCAAGCAGTGTACACAGAGAGAAGAGGTCTACACCTGTAAAGGTTAGCCCAGTCTTAGCTTCCTGCTCGCCCCTTGCCTCTGACCGGACTCAGCAAGTGGAGGGTGGTTGTTGATGGTGAAGGGGGGGTGAATGGTGTTCTAGGACAGAGGTTTGACTCTCACTCAACCCCCTTGTGgctgtcagaaagagagagagagagcgatagttCTGCGGCAGAGGAGAGAGCAAGACGATGGAGATGGAGGACCTTTATAAGCACTTTGAGGGATTTTCTGTTCTATGGGTTTTGTTTTAGTACCCTGTGGCCCCAGCCAATGGTGGTTGGGGTTGCAGGAGGAGATTGGCCTTGTCTGACAACAGGGTCAACATGGGTCTCATGTTTTCTCGTTGCAGAGCTTTGGAGTAAGGCCACCTCACCTATTCAACATGCAGTCAGATGTGTCAGTGAGAAAAAGCAGCACTTGGCCGCTGTCTCCGGCTAGCATGCTGTTAATGAGGATCCAATAGAATGACCGTAATGGTAAAAGACTGGCTTTTGGGCCTTGCCCAAtgtagaaatgtgtgtgtgtgtgtgtgtgttagcgagTGAGGGTGAAGAGGTGGGTCAAATTACAACTCATATGGCAATCATGGTAACCATATTCAGAAACTGTTAAGAAGACAGGGTGTACGATGAATTCtacacacacatatttacacacacacacaacactgtgtgtaTGCATATGTATGTAAATAAATTAAATTGTATTATAATGATATTATATACACTTGCTACTTATCTGAATATGTTTCAACAAACCACTAACCACACAAATGCTTTGTTGTTTGTGTGTTCTCGCTCTCTTCtgctttttattttgttttgacaAGGCCCTTTGGAAAGCAGCACATGTGTGTCCTTTGTCTCACTCTGTGGATCATTTATGGACCCTTTGGGACTACTCCTTCACGAGGAGAGAAAACACGCTCATTTGTCTTTGATTCTTTTACACTAGAGTGAAATTGTTGGTGAATACATTTGCCAGTCATTTTAGGCTACTCTTGGCCTTGAGCGAAGTCAACTAATGTTCAGGGAATAACTGAAACCACTATATCTTATTTGGACTGATggtaaaaagaaaaaagaaaacctGTATGTAATGAAAGTTCAGTGAGAGAATGGACTTGCTTTCCTGAGTTTAGTGTCTACTGCTGTCACCGTGACAACAGCCTGACCAGTGGAGAATGCATCTTCCAATCAGATGAACAGAGCTCTAACTAGAACAGCTTCTTGGTACTTAGCCctctatttaaaaaaagaaaagcaaATCTTGCTagtaataatactataataacactATTCTCTCATATCCTTCCTTCGTCTCTCTACACCCCCCCATTCAAGTATTAACGGTGGAGATTAAAAATGAACAGTATGGTCCAATGAAAAAATGTCTTACACAGTTACACCCTCAAGCAAATTTGGTATTTCAGATATAGTCCCGCTGAAGCTCGCAACAACAAGGTGACAAAAATGTGTTTGCGACGACAAAGCAAATGTATGCTCTAGCTGTATGCCTATGCATTGTCTATCCATTGTTTTTGGGGGGTGGCTACCACAACTCCACGACTGCAAAGGTTACAATCTCCTTTCGTGTTGATTTGACAGTAATTCTCTCTCTGGCAGGTTACTGTTATGTTGCGCATGTCTAAAATGTCATGTTGGATGCGTGACGCTTCAAATGACTGGCGGAAAAGGCAGAGCCAACCCTCTTAAACACCCACAATAACTCATGAGATGCCAAGTCATCCTTAGATTCCCTTTAGATATACAACCGTTGCCTGTTTCAGGTGGGTGAGAATGAACTACTGAGGGAGGAACCCGACATTGTAAGATAGCCCCATTCACGCACTGAAGCCCCAGAAGTCCTTTATCATTTCCCCTTTTAAAGTATTTAAAGATCCTGTATTTATGAGTATAAACAGTGCATATGTTTGTGTTTTCCTTTTGCTTGTTGTAAATAACAGTGGTTTATTCTCCTGTGGTATAGAGACAAGAGTGAGGCACATGGTAAAATCTCACAGGCAAGTAAAGAGGAAGTTGGTAGCAATAAGGAGGTTAGGACCAAGACGTTTGATGCTGGAAAGGCAAGTGGTCAAATTTAAGTGGATGCATAAGGCTAAATCATGAACATGGAGTACATTGCTGCTGAAAACTTTTGATTGTACGTGATCATCATTAAGTGAAAAAAACATTAGTAGATAGCTGTGGTCCGAGCTGTTTTCGAGGGCATTGGCATGCTACGTTAGAAGCGGTGACACTCACAGGATTGATATATGATTCAACCCACCGTGACTTATCAAGGACAAGCAGCATGCTTTGAGAAGGGCGTGTAGCCTAGCGAAGGTTGGTTGGTTCATCCTCTAGAGCTGGATTCCAAACATGCCAAATAACGAATGGTCAAAACCTACATAGAACTTTGCACGTTACATGGAATCCATAATGGCTCTGCTAAGGAGCCTGAGCATAAATGCCTGCTTCCCACAGCTTCTGGTGAGCGTATTCTACACACGCACTCCTCTGCACAAGACTGGTTCTCTACAGTGGTAATTTATTAAACGTATATAAAAGGTCAACAGAGTCATGACGAGAGGAATACAGGATGCACCTTGCATGTATTTtgtatgttttatactgtacatatacacacacacacacgttttcttTTTCAAGACAAAGGACGGCATGATGCAACGGTTGTTTCTCAATTGTCATTGTCTTAGTCCTTCATATTCTATTTTTGAACTCATAGCTCTGCACTGTGTAGTTGTCAGTGGGATCATGTATAAAAATCTATTTTGTAGAAAAAGTGAAAATAAAAGAAAGATAAATTATTTTGAGATATTTTATGAGCATGTGTTTAATGTAAATAACGTAAAGTCAAAACTGATTTTATATACctgtttttttttactctgtttttttttctcctttaggCTTGTATGAGTGTTTTGCTTCTTTGGGGTGGAGGCTTCAAGAGGCAGTGTATTCTATAAAGTCAGTTTCTATAGATAACTCTAACATTTGCAGTTCCTAAGCACAAAACAAATCCTTACAAATTGAGTAACTTAACACTTCTCGTTCCTTTTTCAACTGTTATATACAACACATCTGAAGGCAATTCTAAAGGCAATTAAATAGATCATAATCAGCTGGGTGCTTTTATGTAATTGACATCGCACAGTACTGCGCAAGTATTTTTCTAGCATTCCGATTTGTAGCGTGATCCGTTTGTTTGAGGGGTTGGCGAGAGGTGTATGGGTTCTGTCTGTACCCCGTAAGTAACATAACCTTCTGTGCAGATAAACACACTGACCAAACGCAGAGTGGTATTGGTGTGAACTCATTCAACTTTTGGTATACTCTGATGAGAGGGTCACATTCACTGTGTACATTTGTTTTAGGATTTGTGCTGTGCTTgccaaataaacaaaacaaacatataTTCCTCTTTGTGATAATACTATACCAGCAAAGCTTTGTCCATGTTCACTTATTCATGTCTTATGGGAACCTAAATTATTGTCCTCTACCTCATGTGTATAGCTTGTAGGTATAAACAGATCACGAATGACTGGTAAGAATGTATTTAAGTTATTTAACATCTTTGTATAACAAAGGCAAGAAAACCTGAAATAATAAATGAATTTTTAAATTATGTGAATGTTTGGTCTCATTCATACCCAGTGGTTATATAGCCATTGCTAAGAGGAGTTTGGTCCAAGCCGAAGCAAGCAAACAGTAAAAGTTCTACACCACTAATAATCCACCTTTCCTTCTACCCATAACTCGAAGCGACTTGTTGATATAGGTTCCAATATGCAATAGTATTTCCAAGCTGTTCAGAGTTCTGGAGACTTAAGGGGTTAATTAAGAGTAGTGGAGCTAAATAGAGGGAGAGGTACACACCCCCGTCATCAAATTCAAGACAAGTACATCCGGCTATTAGAGCCACTCTCAGTTGGAAAACGCTGTGCATTCCCAGTCGTGGACGGATGTCACAGACAAGAAAGGCCATGTCTGCGACGTGTTACGTCATGTTGAGATAAGTGTTCATTAGAATCTGATACCGACTCCTGTTGGATTGCCATATACATCATGGAGACGCACCCTCTGTTTGCTaggacatttcaaatgtcttccTTCGACGCCCAAGGGTAGCATGAGACTATCAAGCCCTACAACCCTAGTCTTTCATCGTACAGTACACATTATCAATCTGTCATGGTGTCTGCTTACCAGGAAGtcaaacacatttattttgtaGCTCATTACTATAGGATATCAACATAAACATTTCACTCTCTTTTGGATTAGACAGTACTGGGCACATTTGCCAAAACTGATACAATCTCCCTGTTGAACTAGTATTATTTAAACAAACTCAATTCCCCTACCAGATGTGTAAAGAATTAAGGGAGTTTTCTTTCTCAACAAGCTACGTGGACGAAGCTTCTCATGGCTCAATGCGCACATGCCTGGAACTCCTGACTTAATCCAAAAGAAAGAGACCTAGAGTCCCTGAATCTGCATCagtgaaaaaaaagaaaaactcaCATCAGATTGCGAAAACAAAACTCAATTACAGGGGAGTGTATCTGTTCTAATACCTAAAACATCACTGGAAAAGCCCAGAGATATCCTCAACACGTGTAGTTGTA

Function

NR:

description
PREDICTED: protein Wnt-9a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K01064 WNT9; wingless-type MMTV integration site family, member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589178.2 True 5870 mRNA 0.44 4 12934237 12968139

Neighbor

gene id symbol gene type direction distance location
LOC110508576 LOC106599876 coding downstream 183945 12746019 ~ 12750292 (-)
ccdc13 ccdc13 coding downstream 246221 12677824 ~ 12688016 (-)
LOC110508569 LOC106569331 coding downstream 267836 12638511 ~ 12666401 (-)
myl13 LOC100194663 coding downstream 418719 12510680 ~ 12515518 (-)
LOC110508565 LOC106600435 coding downstream 685728 12245790 ~ 12248509 (-)
LOC110508580 LOC106599867 coding upstream 98676 13066815 ~ 13081622 (-)
obscnb obscn coding upstream 135939 13104078 ~ 13208077 (-)
LOC110508585 LOC106599848 coding upstream 272423 13240562 ~ 13262111 (-)
LOC110508588 LOC106599832 coding upstream 318895 13287034 ~ 13481207 (-)
LOC110508590 LOC106599824 coding upstream 577151 13545290 ~ 13767407 (-)
G2106296 NA non-coding downstream 77723 12856236 ~ 12856514 (-)
G2106284 NA non-coding downstream 84329 12849567 ~ 12849908 (-)
G2106279 NA non-coding downstream 89363 12844396 ~ 12844874 (-)
G2106277 NA non-coding downstream 90531 12843296 ~ 12843706 (-)
G2106225 NA non-coding downstream 126098 12807909 ~ 12808139 (-)
G2107190 NA non-coding upstream 173478 13141617 ~ 13141832 (-)
G2107197 NA non-coding upstream 195043 13163182 ~ 13163390 (-)
G2107198 NA non-coding upstream 195700 13163839 ~ 13164054 (-)
G2107202 NA non-coding upstream 207446 13175585 ~ 13175784 (-)
G2107283 NA non-coding upstream 384834 13352973 ~ 13420377 (-)
G2105419 LOC104953893 other downstream 1434165 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 2040157 10886198 ~ 10894141 (-)
G2103920 NA other downstream 2225738 10708012 ~ 10708499 (-)
G2103257 NA other downstream 2727561 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 2818840 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 2571629 15539768 ~ 15554897 (-)
G2109705 NA other upstream 2635546 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 2735197 15703333 ~ 15793545 (-)
G2110939 NA other upstream 3831251 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 4288069 17254319 ~ 17260420 (-)

Expression


Co-expression Network