pcmtd1 (pcmtd1)


Basic Information

Item Value
gene id pcmtd1
gene name pcmtd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 13883555 ~ 13910267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589230.2
AATAACTAATGTCCACTAGAGAGGACAGCAATGCATTGCTGGGTCTCAGGGGGATATGTCTTAGATGTTTTACCCTGGTTCAAATTTTCCCCTTGGGGCAATCATTAGGCTGTTGCACACGTCTGTCTGCCTACAGCACGTGACATGTGTTTACATCCTCTCAGCTGTGTTCCTTCGGAGTGAAGAACTTGCTGGTAGGCTAGTCACCACTTCACAAACTACAGCTCGTTAAACTAACTgaccttgttttttttcccctttgAAGTGCATCCACCCCTGGGACTGAGTTGATTCATTTGACTCGGCGCTAGTTAGCCTGTCTTCATATGACGATGGTGTGAAGTGGCCCCAAGGGAAGAAGAAGAACACAATCCCTCAGGTGTCCTCTTCATCTTTCCATGCCACATTAAGACAACAACCCAGCGCTCCACTTGTGGAAAGAAGAGTTTTGCACCTGCTTTTTGTTCTACGGTTTATTTTTCGCCATGGGGGGTGCGGTGAGTGCTGGGGAGGACAACGATGATCTGATTGACAACCTGAAGGAGGCACAGTACATCCGTTCGGGCTACGTGGAGCAGGCCTTCAGGGCCATCGACCGCGGGGACTACTACCTGGTTGGCTGCAgGGATAATGCCTACAAGGACCTGGCTTGGAAGCATGGCAACATTCACCTGTCTGCCCCCTGTATCTACTCTGAGGTGATGGAGGCGCTGAAGCTGCAGCAGGGACTGTCCTTCCTCAACCTGGGCAGTGGGACTGGGTACCTCAGCACCATGGTGGGACTCATCATAGGTCCATTTGGAGTGAACCATGGAGTTGAGCTCCACAGGGATGTGGTGGATTACGCCAAGGAGAAACTGGATAACTTCATCAAGAATAATGACAGCTTTGATAAGTTTGAGTTCTGTGAACCCATCTTCACAGTGGGCAACTGTCTGGAGATCTCGTCAGACAGTCGCCAATACGACCGTATCTACTGTGGTGCGGGGGTGCAGAAGGATCATGAAAATTACATGAAGATCCTGCTCAAAGTGGGGGGTATTCTAGTGATGCCTATAGAAGATCAGCTGACCCAGATCACCAGGACTGGTCAGTGTTCCTGGGAGAGTAAGAATATCCTGGCTGTGTCGTTCGCTCCTCTGGTCCAGCAGAACAGAGCTGATGGAAGCAAGCCTGATGCAGTAGAACTGCCCCCGGTGACGGTCAGGAGTCTTCAGGACCTGTCTCGCATCTACATCCGCCGCACCCTCCGAGATCTGACCAACGAGGAGAGCCCTGACAAAGGCCTGGTGCAGAGGGCGCCCCAGAAACGCAAGCGCAGGCGTTGCCGGCGGCGACGTATTAACACTTACGTCTTTGTGGGCAACCAGCTGATCCCCCAAGCCGTGGAGAGCGAGGAGGACGAACGGATCGAGGAGGAGCAGCACAAGGAGGtgcaggagaaggaggaggagagagacattggCAGCATTGAGATACTGAAGGCAGTAAATGTACTGCGAGATAAAATCATGACTTTACCTCTGCCTGAATCGCTGAAGGCCTATCTGTTACACTACCGAGACAAATGACTGATGGCTCAACCTGCTGGCATCCATTCTAATGGATGCAATGCCTGCTGAGATGCTTTTCCTCACTTTCCTGTGTTCTTTTTTTCAGTGCAGAATGATGTAGCATTATTTTTAATTTCTCTTAAAGGTGAACCTGGAATGGAGACCGAGAGACTTCCTGCTTGTCTTGGATACTAtgatctgttttttttatgttgtCTATTGTTTTTGATTTTTGGATTTGTATATCAAAGCTTTATTTAAAAGCCTACTGAACGTTTTTCAAAGATTATATTTTGAGGATGTAGATTTTATCACATGTTAATATTCCAGCAAATTGTCACTAAATAAaattgtataaaataaaaaatgctaACTATATTTGTTAAGAATATGATAATGAAAATATCCATAATTTTACTGCAACTTTTTCTAGAAGCTTTAAAGAACTTATTACGGAATAAAGATGTACAATTACTGAATGGAAGAACCAGTGACAAATGCATGTACACCTCATATTATTTGAATCAAAGACTATTATGGAACATTTTATGAAACATTTTTTCTCATGAATCTTTGAAGGGGCAATTCTTTCATTGTTCTTTCCTCACACTGTTATGTTTGAGtagagtgattttttttttaatgctgcGTGATGACGAGAGATCAGTGGGACTCGGACTAGATTGCTTTGTGATTTCACCTAGAGGGCATTCGTAAATCTATCAGAAGTGTTACTTTTAGAATGGTTATATCCTCATATTTTATCTCACTTTGCTCTTAAGTAACATACATTAGGCTTTTATATGACTAGGCATTTTCATTTGGTGATACATTTTTATAGCCTTGAGTGATTTGTCCGGCAGACTTCTTTCCCCATATTTTTTTGCTGACTTGCAGAAGGGTTTATAATCATCATGCCAGCGGTTAGGCTACTGGGGAATCTAATTAATGAACATTTCTCTAATGGTGAATGAAAATGGCCTTCTCATAAATGTCTTGATCCGAGAATCTATTTTTCCCCCCGGCACAGCATCTCTAGTTCTTTATCATGACCTTTAGCACTTACAGTACTTCAGAACAAACAAGAACCCGCTTTGAACTCACAGGGGTATATGAGTCATATAATAATATTGTGCGGTGATAAGTGGTATGGATTCTCTTAAAGGTCATGTTTGTCATCTTTGGCCCACAAGACATCCACTCATGATCATTTGGAGGTGATGTCCAACATGATCAAAGGTGTACTATTACTTTCTATATTAAAAGAGGTGGTGTGTTTTTAAACCACAAAGAATGACCCGAGGCGGGTCATGGCACAAAAACCCACAGTACGTTCTTTGTACTGCATTTTCTATTTGCAGCAGTGCAAAATCACAACGATGGGAGATTTTTGTCATCCTTTCTCTGTACTGTTGGTGTATTCAACATAGCAAGCACCTTTTATTCTGTTGTCCTAAATCATGAAAAGAGAGTTGTCATCCTTGGgttgatgtatgtgtttttactGTGGACTGGATCAAATGACAAGACACATGGTATTTGAGTCAGGTAGCTGTACGTGTATCAATTACCATTTTATTGTGAGACTCCCAGTTTAAGAGATGGCTTTTAAAATGCCAAAACACCCCATCACATCCGCTCCTTCTCAAGTGATTCTTGTTTTATGGCAAAGTAAAAAGGGGACATTCTGACCACAGTGGCGTGCGTCTAAGAATGATTGGGTGCTTCTACAGTGCATTCCAGAAATGCTTGAAAAAGAATAGCATGCTCAATACCCATTGGTAGATGTCACGTTTGTATTAATATTTGACAGTTGTGTCACATTACTTGGAAATTCCTGATTGATCTGGCTTTGAAAGCATTTTTTATATTTCAATAGCTGAAATGATAGTTGTTGATTTATTATTGAGGTGAAATGTTGTATGAACATGACAACAGTACAGTAGCTGGTTATGATACGTTTGGTTATAAAATCATTTGGATTAGGTTTGCTTTGTTTGTTGTTGTAGCGCCTTCTTGCTGTCACAAGGCACTGCGGAGTCTTCTTGTATGTAGATCCAAACTCCACTTGTGTTAGTTCTATGGCTAAACAGGCATGTGCTCAAAGCCTTCCATCTTGTTCTGGTGTAGTGTATACTATTTGGGTTTAACATGGGGTTAGTTGATTTCTATATATTGGTTATTGTATTTTGTGAAGATCCTGTAGACCTTTTTCCATCATGACCTGAGCAGTGTTCGTATTGCCAGGAAAACGTTTGAATTGTAAGCAATAATACATAAATGACTTTAACTACAAAAAAAGAGGAAGCAGCAGAACCGTATGGCTCTGATTGgcaaaaacaacacattttttatAGTCATCCTTTTGAAAAATCAAATCTCTGAAAAATGCAGAGATGCTAAATTATGTACACATGAAACTGTTGAAATCATTATTTACAATTGGTAAAACGGCAAAGTTATGGTTGGACATAGTTCAGGAGTCATATTACCCCCATGTACCAGAGGTGATGCGTTATCATATGTACAGTAATACTTGATAGGATTGTTTGGTTCCCCAAATGGTCCCCACAGTAAAGACCCAATTCCAAGCCTATGTTTTGGTCTTGCCCTCAATCTATTTGTAGTAAGGCAGAACtattgttctgtttttttttctcctttatcAGGCTCTtgttgatatctcaaagtgtgaTTGATGGCAGTTCATTGTTGAAATGGTGTCAGTTGTTCCCTCTGTACATGTTTCGGCATACACAAAATAAAGGTCACAGACTTCATA

Function

symbol description
pcmtd1 Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human PCMTD1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589230.2 True 4335 mRNA 0.42 7 13883555 13910267

Neighbor

gene id symbol gene type direction distance location
LOC110508593 LOC106599814 coding upstream 4386 13837357 ~ 13879169 (+)
rb1cc1 LOC106599822 coding upstream 65602 13800238 ~ 13817953 (+)
LOC110508165 LOC106599827 coding upstream 354671 13526617 ~ 13528884 (+)
asb10 asb10 coding upstream 359431 13516662 ~ 13524124 (+)
LOC110508586 LOC106599847 coding upstream 599068 13270138 ~ 13284487 (+)
snai2 snai2 coding downstream 61621 13971888 ~ 13974454 (+)
cebpd LOC100379114 coding downstream 229383 14139650 ~ 14140685 (+)
klhl14 LOC106599787 coding downstream 443178 14353445 ~ 14397097 (+)
LOC110508606 LOC106599779 coding downstream 518704 14428971 ~ 14504254 (+)
LOC110508607 LOC106599774 coding downstream 597280 14507547 ~ 14511195 (+)
G2107026 NA non-coding upstream 25046 13858298 ~ 13858509 (+)
G2106870 NA non-coding upstream 236523 13610395 ~ 13647032 (+)
G2106811 NA non-coding upstream 362951 13519619 ~ 13520604 (+)
G2106793 NA non-coding upstream 387027 13496298 ~ 13496528 (+)
G2106791 NA non-coding upstream 389355 13493910 ~ 13494200 (+)
G2107703 NA non-coding downstream 110960 14021227 ~ 14021454 (+)
G2107730 ube2v2 non-coding downstream 196331 14106598 ~ 14112041 (+)
G2107791 NA non-coding downstream 256264 14166531 ~ 14169057 (+)
G2107796 NA non-coding downstream 259428 14169695 ~ 14173399 (+)
G2107827 NA non-coding downstream 313872 14224139 ~ 14224614 (+)
G2106557 NA other upstream 739960 13143313 ~ 13143595 (+)
G2106549 NA other upstream 749070 13133894 ~ 13134485 (+)
G2106548 NA other upstream 749794 13133399 ~ 13133761 (+)
G2106543 NA other upstream 756324 13126962 ~ 13127231 (+)
G2106278 NA other upstream 1038651 12844387 ~ 12844904 (+)
G2107033 NA other downstream 1160 13911427 ~ 13913227 (+)
G2109948 NA other downstream 2028244 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 2038041 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 2537845 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 2902327 16809471 ~ 16813125 (+)

Expression

pcmtd1(pcmtd1) Expression in all Baseline Samples

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pcmtd1(pcmtd1) Expression in each Bioproject

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pcmtd1(pcmtd1) Expression in each Sample
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Co-expression Network