LOC110508607 (LOC106599774)


Basic Information

Item Value
gene id LOC110508607
gene name LOC106599774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14507547 ~ 14511195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589258.2
gcggagtcACAAGCATCTTGTCATTATGTCCAGGATCTCTGATAATATTGCTAGCCAGACAGTTATTTGTTAATTTTTTCGCGAAGTCATTGGTCGATATTTGTACAAAATATTCATTTTCTATCGCTTGATGTTGTTATGGTAGTTGCTTTTTAAGTGAACGTTTTACATTTCAAATCGTAGACCGAGGAATGAGTGATATTCATTTAGGAATAacatgctaacattagctagctagccgaagtagctaacgttagctactgttATTATCTAGCTCTTTGTTTTGACTGTGATGGTCTGATGATGTTGAATAGCTTGGAAAGCTGCTGGGGCTCGATATAGTATTCGTATGAACAGACATATTATATTTTAATGGGTTGTTAAACAGTAGTTAATGTGTAATACCGTTACTTCTGTAACGAGTGGAGGATACATGTGGTTGTAAACTAACAATAGTAAGTTTACAAGCTAGCTTCTATAGCTAGCTAAACAACGAGGGGCTGAGAAGAGGACATGGGCAATTGTCTCAAATCGCCGACGTCGGACGATATATCTTTGCTTCACGAGTCTGACAGAGGAAGTTATGGGGAGGCAGACGCGGATTTGGAGCCACCTCCGCCTTACCAGGAGCAGGCTCACATGCCGGTGTACCACCCCACCCCCAGCCAGGCCCGCCTGGCCACCCAGCTGACTGAGGAGGAGCAGGTCCGTATCGCCCAGCGTATCGGCCTCATCCAGCATCTTCCCCGGGGCGTCTATGACGGAGGCCGGGACGGCTCCGAGAAAAAAATCAGAGAGTGTGTGATATGTATGATGGACTTTGTGTACGGGGACCCCATCCGGTTCCTGCCCTGTATGCACATTTACCACATGGACTGTATAGATGACTGGCTGATGAGGTCCTTCACCTGCCCCTCCTGCATGGAGCCTGTGGATGCTGCCCTGCTTTCCACCTACGAGACCAACTGACCCCTAAGACAACCCTACCCCATTATGATGAGCTCCGCAAAGCcgcacccctacacacacacacacacacacacacactacaaccatCACAGACTTCTTACAGCGCCACCTCCACCAGCCCCAACAAATACATACACACGCtgccctcctcccctctgctTTTAACTTTGGGATAACGAGTAGCATGGTGTCTTGGTCGGTgatgacatagagagagagagagactatgcgAACACTAGTGATTAACAATGAAAAGACTTTGACCCATCCGCCCATCACCTGGAACTGGCTCTGAACTGAACAGGCTGAGTCATGGAGGACATAGGAGGACAAGCatgcaaaatatgtttgtgtgtctgtggtggaCTGGGTTCCTGAgccagctgttgaatacagtaggcCTGGGTTGGTGATGTTATggtgggaaggaggaggagggggctgtTACCGTAGTGATGGCTCACTGCAGTTCCACTTGAGCAGGTCTCGGTGGTATCCCATCCCAGCATTTTGTTCACCATGATTAGTAGCTGGAAATGGGATTGGATAATTCTCTGTCGTCTGAATTTGTCCACCAGGAGGTATCCTATCAGATTCCTCTAAAAGCCACAGCTGGCAACACCATGACATGACTCATCTGTCTTCTAAAGTCTCCAAATCCTGCACTCTGAATATGGCTTAGTAAGGGTAAAAAAGCCCCAGGAAAGCCGGCATGGTGGCGTAATAATCGGTATCTCTCTATGGACTGAAGCTTACCCTGTTTTAGTGTTACAGTTGCAAAGTAAAATAAGTTACAGAGCATAGTATTCTTTAGGCTTACAACAAAGTAACTATAGTATGCACATACACAGTGCAGAAATCACCCAAAGTCCATCCTTTATTAGACTATGTACTACATGCATTGGCTTTTGTTTTGCCATTCAGATTTGTATGTCAGTCACCCTGTGTAAGGTTCATATGTTTTACTTTTAGAGGATTAACATAGCTGTCAGCCAATGTAAAGGGCTCGTTTGTGCATGTGGTGGAGGATCAGTCTAGAAGTTAGGAATGCTTGCACACACATTAAATCTGATCCCGAGATTTGCACTTTACTTATAGGACATTAACGGAAGCATTAtgttaatatatatctatatctataaccTTGCACTTTtcaatattatttattatttttgcaGCACAGAAGTTAGGATTGATATTGATAATGGTATCAATGCTACCATTGGTCACTTATCACATTAAAGAAAAGCTCAATAGCTGAATATA

Function

NR:

description
RING finger protein 11-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589258.2 True 2235 mRNA 0.45 3 14507547 14511195

Neighbor

gene id symbol gene type direction distance location
LOC110508606 LOC106599779 coding upstream 3293 14428971 ~ 14504254 (+)
klhl14 LOC106599787 coding upstream 110450 14353445 ~ 14397097 (+)
cebpd LOC100379114 coding upstream 366862 14139650 ~ 14140685 (+)
snai2 snai2 coding upstream 533093 13971888 ~ 13974454 (+)
pcmtd1 pcmtd1 coding upstream 597280 13883555 ~ 13910267 (+)
LOC110508609 LOC105019392 coding downstream 97270 14608465 ~ 14615388 (+)
LOC110508610 LOC106599772 coding downstream 114810 14626005 ~ 14627454 (+)
LOC110508614 LOC106599757 coding downstream 262806 14774001 ~ 14881880 (+)
LOC110508616 LOC106599750 coding downstream 417496 14928691 ~ 14941630 (+)
exosc4 exos4 coding downstream 432314 14943509 ~ 14945337 (+)
G2108182 NA non-coding upstream 85965 14421051 ~ 14421582 (+)
G2107836 NA non-coding upstream 268971 14237200 ~ 14238576 (+)
G2107827 NA non-coding upstream 282933 14224139 ~ 14224614 (+)
G2107796 NA non-coding upstream 334148 14169695 ~ 14173399 (+)
G2107791 NA non-coding upstream 338490 14166531 ~ 14169057 (+)
G2108303 NA non-coding downstream 4752 14515947 ~ 14516181 (+)
G2108304 NA non-coding downstream 5347 14516542 ~ 14516782 (+)
G2108315 NA non-coding downstream 11073 14522268 ~ 14522606 (+)
G2108320 NA non-coding downstream 15258 14526453 ~ 14668393 (+)
G2108327 NA non-coding downstream 70881 14582076 ~ 14590000 (+)
G2107033 NA other upstream 594320 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1363952 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1373062 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1373786 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1380316 13126962 ~ 13127231 (+)
G2109948 NA other downstream 1427316 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1437113 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1936917 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 2301399 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2442589 16953784 ~ 16958852 (+)

Expression


Co-expression Network