LOC110508608 (LOC106599765)


Basic Information

Item Value
gene id LOC110508608
gene name LOC106599765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14615917 ~ 14625901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589259.2
AATGGCAGATGGTCTTTTCACTCGGTAGTCTTGTTTTCTAGCTAGTTAGTTAACCAAGGCAAGCAAACAACCGCACCTCAAGCTGCAACGGGCAATTTTTTTGAAACAAGTGTTATCAAGGATGTAGCCGAAAAAAATTGGTATTTCCATTCTTAATCGATTGTTACAACAGTGAGAGTATATTTTCCAACTGCATTgtttttacgtgtgtgtgtgttgtttctgcTGTTGTCAACACCTCACCTCTACCCACATCCATTCTATGCTAGCAAAACTGCTAACTAGGTTAGCTAAATACTAACTGTTAAGGTAGCAATTGCAGGTGTCGTTGGCAATTAGTCAACATcattaatacatttattttgggTAGTCTGCTTGCTGGTTAGTTACGTTAAATCATGACCGGGGAAAAGATTCGCACGTTGCGGAAAGACCATAACAACAAGCCCAGTAAGGATGGGGATATAATGGAAACCTATGATGAATCTACAAATGGGACAATATCATCTCCAACCCCCAACGGTACCACCATCACGTACAAATCAAACAAGAATTATAACAAGACGGTGAAACCTTTGGTACTGCAGCAGTTGTCGAATATCAATGCAAACAATATCAATGGCAATCAATCAGTTGTCAGCATCATCGATGACAATAACAAGAACCCAATCCTTCTGACCAATGGCAATGAGGGCTTCAATTTGGAATTCCCTGTTCACGAATGTGTGTTCAAAGGAGATGTGCGTCGCTTGTCCTCACTCATTCGGACCCAGAACATCTCCCAGAAAGATGTACATGGAAACACACCTCTTCACTTAGCTGTGATGATGGGCCACAAAGAGTGTGCCCTCCTGCTCCTGGCCCATAATGCCCCTGTGAAAGTGAAGAATGCACAGGGCTGGAGTCCCCTGGCAGAGGCCATCAGCTATGGAGACCGACAGATGAttACGGCTCTACTGCGGAAGCTGAAGCAGCAGTCCAGAGAGAGTGTGGAGGACAAGAGGCCCAAACTGCTAAGAGCACTGAAAGAGctTGGGGACTTCTACTTGGAGCTTCACTGGGACTTTCAAAGTTGGGTGCCCTTGCTCTCCCGGATTCTGCCATCTGATAACTGCAAGATCTACAAGCAGGGGATCAACATCAGACTGGACACCACTCTGGTAGACTTCACAGATATGAAGTGTCAGAGAGGAGACCTCAGCTTCATCTTCAATGGAGACGCTCCGCCTGCCAAGTCCTTCTATGTTCTGGACAATGAGCAGAAGGTGTACCAGCGTATTCACCACGAGGAGTCTGAGATGGAGACTGAGGAGGAGGTGGACATCCTGATGAGCAGTGACGTCTATTCTGCCACCCTGTCCACCAAGTCCATCACCTTCTCCCGCAGTCAGATCGGCTGGCTCTTCAGGGAGGACAAGACGGAGAGGGTTGGTAACTTCCTGGCAGACTTTTACTCTGTGAACGGCCTGGTGCTGGAGTCCAGGAAGCGCAGGGAGCACCTGAGTGAGGAGGACATTCTGAGGAACAAGGCCATCGTGGAGAGCCTGAGCAAAGGAGGGAACCTGGTGGAGCAGAACTATgagCCTCAGAGAAGGCTGTCCCTCATGGCTCCAGGTCCTAACACTATCTCCTGGGAGGAGTACATCTCTGCAGAGCACGGAAAGGCACCTCATCTTGGGAGAGAGCTTGTGTGTAAGGAGAGCAAGAAGAACTTCAAAGCGAACGTAGCCATGAGCCAGGACTTCCCTTTGGGCATTGAGTCGTTACTGAACGTGTTGGAGGTCATAGCCCCATTTAAGCACTTCAACAAACTCAGAGAATTTGTTCAATTGAAGCTTCCTCCTGGGTTCCCAGTCAAACTTGACATCCCTGTGTTCCCCACTATCACAGCTACGGTCACCTTCCAGGAGTTCCGCTATGATGACTTTGAGGAGTCCATCTTCTCCATCCCAGCGGACTACAAGGAGGATCCCAGTCGcttccctgacctctgacctggttGTCGTAGCAACCAGAGGTTTCCCCGGCCCCGCCCATTCGGAAACTGACAGAGAAACAAACTCTACCTACCTACACTATTAAAAGGAAAAGAACCAACTAACGACAGTTGAGATTAAATAAGAGGATGCCAATGTATTATTtgatatctgtctgtgtgttctgatGAAAAGGGGGAATTATCTCTTGGCcctgagttttttttattttttattttgtagatATTTCCTTATAGCAAACACAAATCAACCATTTTCAGCTGTGTAGCAACAACAGCACGAGGTCAAACTCCAGAAGAGAAGAATTGAGGGGATGAGGAGTTTGAAAAAATATTTGATGTCATCTCCGTAACAGCTTATTGTTCACCGACTACGTGATCACTGCTTTGTACTGCAAACCAGCTCCTGTGAAACGTCATGGAGTTGGCTTCATCTGTGACATCTTAACCGTGCACTTCTCCAGGTTTAGCACTCACTGCGCCCAGTTTATCTAGCGTCTGCCCTTTGGGGACTGCCCCTTTCTCAACATGTTTAAGTACCCTTGGACATTCATTGCCTGTAAATGACTATGGTATAAATGGAAGTGTCAGAAATATGAAGATGTCAGAACTGAACTGAGAAAATGATGTaccaaacatactgtatgtatgtcaAAGGAGCAACACTGTGTAGCAATACATTTCCAGTACATAagaatgtttttttaaaccagcTGGGAGGAAAGTATGGTGTAAAACTGCATTCTTTCAAAGATATCAACACCCAAGCCTTTTCTCTCTAGTGCAGGTTAGCTCATCTATCTTACCTCCCGGCTATCACTGTCTGTTTCAAGTGACTGTGAATTTAATCtgttttgtgtgtgagagaggactttaaagggtgttgtgtgtgtgagattgtgtgaGTGAACCCAGATGGGGTATCAGGAAAGCTGTTCTAGTTTGATACTGCACTGACATTAAGTATATTTAATCGCATGCTACATTGACCCAATTGGATTCCTTGTATACTCTTGAGCGTATATTTCCTACACTTGTTATACCTGCTACCATCTCCCTATCCTTTCTGATTATTCAGGAAGACTAACTTCTACCGTATAAATATTGTAATCACACTAAAATCCCTTTGGTCAAATGTACTTAGGTGGTTTAAGCATTAACTGCAACTTTCATTGAGTATACCTGTCCATATTACTTTACTTTTCTGTACAATTTCATTACATTTCAATGAGCTTACAGTTGGACTGTATAAGCTCATTAAAATGTAAGATCCGTATGGTCTTTGAAATCAGATGTGTATCTGGCTTCGGGCCTACTGGTATTTCTAAATGTACTGCAGCTTTCCAACTTCCCATCCCTTTAAATAAAGCACCAGCACCATCATGTCTCAGCA

Function

NR:

description
ankyrin repeat domain-containing protein 13C-like

GO: NA

KEGG:

id description
K21437 ANKRD13; ankyrin repeat domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589259.2 True 3389 mRNA 0.45 13 14615917 14625901

Neighbor

gene id symbol gene type direction distance location
LOC110508166 NA coding downstream 94947 14516805 ~ 14520970 (-)
dtna LOC100195747 coding downstream 323368 14259507 ~ 14292549 (-)
mapre2 LOC106599798 coding downstream 363197 14234709 ~ 14252720 (-)
spidr spidr coding downstream 388175 14141124 ~ 14227742 (-)
LOC110508600 mcm4 coding downstream 477901 14123020 ~ 14138016 (-)
LOC110508612 LOC106599764 coding upstream 3634 14629535 ~ 14652591 (-)
LOC110508613 NA coding upstream 135576 14761477 ~ 14762622 (-)
LOC110508618 LOC106599747 coding upstream 325812 14951713 ~ 14971756 (-)
LOC110508622 LOC106599742 coding upstream 687802 15313703 ~ 15315936 (-)
LOC110508623 LOC106599911 coding upstream 706366 15332267 ~ 15335367 (-)
G2108545 NA non-coding downstream 4097 14608493 ~ 14611820 (-)
G2108319 NA non-coding downstream 90200 14525458 ~ 14525717 (-)
G2108302 NA non-coding downstream 100243 14509768 ~ 14515674 (-)
G2108298 NA non-coding downstream 110707 14504905 ~ 14505210 (-)
G2108294 NA non-coding downstream 119388 14495288 ~ 14496529 (-)
G2108574 NA non-coding upstream 54012 14679913 ~ 14680244 (-)
G2108577 NA non-coding upstream 58245 14684146 ~ 14696693 (-)
G2108693 NA non-coding upstream 224099 14850000 ~ 14850206 (-)
G2108694 NA non-coding upstream 224732 14850633 ~ 14850869 (-)
G2108696 NA non-coding upstream 226411 14852312 ~ 14852556 (-)
G2105419 LOC104953893 other downstream 3115845 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 3721837 10886198 ~ 10894141 (-)
G2103920 NA other downstream 3907418 10708012 ~ 10708499 (-)
G2103257 NA other downstream 4409241 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 4500520 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 913867 15539768 ~ 15554897 (-)
G2109705 NA other upstream 977784 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 1077435 15703333 ~ 15793545 (-)
G2110939 NA other upstream 2173489 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 2630307 17254319 ~ 17260420 (-)

Expression


Co-expression Network