LOC110508610 (LOC106599772)


Basic Information

Item Value
gene id LOC110508610
gene name LOC106599772
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14626005 ~ 14627454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589262.2
taaggCACACAAAATATATTGTTGTAAACTCGTGATGATACATGCAATGTAAAAGTACCAGCTTTGGGTATAATTTACAGTATTTGTTCTCAAACTTAAATCTGGCAATATGTTTGACGCCAACTATGGGTCCTGAATGAAGACAGTGTTTTTTTCTTTGCCAAGGTTTCTGAAATTTGGTTTGAAACTCAATGAAAGAATGCCTCCAAAAAATAAGCAGAAGAAAGTGATACATCAAGATGAACTGCGACGGTTaatgagagagaaacaaaggcaAACGATAGATAAGAAGCGTGTCGAATCCCCATATGCCAAGTACAACAGTCTCGATCACCTTAGCTGCGTACTCTGCAACGAGCGAGTAAAGAATGAACTATTGTGGCAGACTCACATTCTTGGAAAACAGCACAAGGAGAAACTTTCCGAGCTCAAGGGGTCTAAACAAAGTTCTACAAGTCAAGGACCCCAGCCTCTGCTTAAAAGGAAAGCTTCTGAAGACACGAATGGGAAGAAGTTTAAACCAGTGGCAGGTACAGAGCAGTTGTCTACGCCAGGGCTACCTGATGATTTCTTTGCTAAACCTGCCCCGCCGGGGCCGAAGAAACTACCAGGAATATTGAAAAAAACGACATCTGCTGGGCTGAGTCTTTTGGCCGGAGTCGATGATGAAGACCGTGATGAAGAGGAGGCTGGTGACCAGGGGGCAGATTCTAGCTTGGGTGTGCAGAAGGGGGCACCTGCCTCAGGACTCCTATCTGATTTCTTCGACAACAGCACCATTCCAGCTGTCCCAGCTGCTTCTCATTCAGGGTCTATCCTCAAACCAGATGAAACTGAGAAGAGTGTGGAGAAGAAGGGAAATACACCTGAAGCTCTACCAGAAGGCTTCTTTGACGACCCAGTGAGAGATGCCAAAGTCCGTAATGTCGATGCTCCCAAAGATCAAATGGATAAGGAGTGGGAAGAGTTCCAAAAGGAAATGAGGCAGGTGAACACCAAATCAGAGGCCATTGTAGCAGAGGATGACGAGGAGGGTCGTCTTGAGCGTCAGATTGATGAAATCGATGAGCAAATTGAATGTTACCGGAGGGTTGAGGTATTGAGAGATAAGCAAGATGTGGTGAAGAAGGTTGTGAAGGAGAAAACAGAAGACCAGGAAGACTCCAGCAGAAGtgatgaggatgaagaagagCTGCTCCACTTGTTGTCAAGGGATTGGAGGGCCAAAGGGGCCCTTGCTTAAAATTCCCAGGGCATTTTGACCCTAACTTGATCAAAAGGTTTCTCCAGATTATAAATAAGAGCGAAGTTGCATAGGAAGCCACTTCTTTCCTCCCTCCATGTCAATGACAAACATTTGTTGAGGATATTGAATGTCTATATAACATGATTTTGTGGTAAATACTGTCAGACTGTCGCACACTTGCGGAAATACTGTACTATCAgcatt

Function

NR:

description
zinc finger protein 830-like

GO: NA

KEGG:

id description
K13104 ZNF830, CCDC16; zinc finger protein 830

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589262.2 True 1450 mRNA 0.44 1 14626005 14627454

Neighbor

gene id symbol gene type direction distance location
LOC110508609 LOC105019392 coding upstream 10617 14608465 ~ 14615388 (+)
LOC110508607 LOC106599774 coding upstream 114810 14507547 ~ 14511195 (+)
LOC110508606 LOC106599779 coding upstream 121751 14428971 ~ 14504254 (+)
klhl14 LOC106599787 coding upstream 228908 14353445 ~ 14397097 (+)
cebpd LOC100379114 coding upstream 485320 14139650 ~ 14140685 (+)
LOC110508614 LOC106599757 coding downstream 146547 14774001 ~ 14881880 (+)
LOC110508616 LOC106599750 coding downstream 301237 14928691 ~ 14941630 (+)
exosc4 exos4 coding downstream 316055 14943509 ~ 14945337 (+)
LOC110508615 NA coding downstream 318550 14946004 ~ 14949052 (+)
LOC110508619 LOC106599747 coding downstream 329428 14955823 ~ 14958873 (+)
G2108327 NA non-coding upstream 36005 14582076 ~ 14590000 (+)
G2108315 NA non-coding upstream 103399 14522268 ~ 14522606 (+)
G2108304 NA non-coding upstream 109223 14516542 ~ 14516782 (+)
G2108303 NA non-coding upstream 109824 14515947 ~ 14516181 (+)
G2108182 NA non-coding upstream 204423 14421051 ~ 14421582 (+)
G2108492 NA non-coding downstream 223689 14851143 ~ 14851398 (+)
G2108494 NA non-coding downstream 224946 14852400 ~ 14852621 (+)
G2108733 NA non-coding downstream 285523 14912977 ~ 14913183 (+)
G2108748 NA non-coding downstream 299998 14927452 ~ 14927734 (+)
G2107033 NA other upstream 712778 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1482410 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1491520 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1492244 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1498774 13126962 ~ 13127231 (+)
G2109948 NA other downstream 1311057 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1320854 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1820658 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 2185140 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2326330 16953784 ~ 16958852 (+)

Expression


Co-expression Network