LOC110508616 (LOC106599750)


Basic Information

Item Value
gene id LOC110508616
gene name LOC106599750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14928691 ~ 14941630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966369.1
ttgggtgggggtggggggggggaagtgTGAGAGCAGTGACCGCTAGCTGCATGTCAGCGAGATATAGAAGAGCCAGGAAGGGGAGTATCTAAAGAAGGGGGGTGGTGAACAGGGATTTGGGCTCCTTCTTTCATATTTGGCTGTAACGTTATCAATTGAATTTCTCTATATTGTTCCAAATTAACGATTTTGCCTACAAGGGGAACGCCACTCAACAACAGCTGTAGCTAGCTACCGCCATCTCCCGCAGTCTGAGCGATCGCCGTGTCTTCCATAAGATGGGAAACGCTGCTACGGCCAAGAAAGGCAACGAGCTGGAGAGCGTGAAAGAGTTCCTAGCCAAAGCCAAAGAAGACTTCTTACGGAAATGGGAATGTCCACCACAGAGCACGACGGGCCTAGATGACTTTGACAGGCTAAAGACCCTGGGTACAGGCTCGTTTGGAAGAGTCATGCTGGTCAAACATAAAGGAACAGAGCAGTTCTTCGCCATGAAAATACTGGACAAGCAAAAGGTGGTGAAACTCAAGCAAATAGAACACACGTTAAATGAGAAGAGAATATTGCAGGCCGTGTCTTTTCCCTTCCTCGTCAGACTTGATTATGCCTTCAAGGACAACTCCAATTTGTACATGGTGATGGAGTATGTTCCAGGAGGAGAGATGTTTTCACATCTAAGACGAATCGGAAGGTTCAGTGAACCCCACGCACGGTTTTACGCGGCCCAGATAGTACTGACATTTGAGTACCTCCATTCACTAGACCTTATCTACAGAGATCTGAAGCCTGAGAACCTTCTAATCGATCAGCATGGCTACATCCAGGTGACAGACTTTGGATTTGCCAAGAGGGTAAAAGGCAGAACCTGGACGTTGTGTGGAACTCCAGAGTACCTGGCGCCCGAGATCATCCTCAGCAAGGGCTACAACAAAGCAGTGGACTGGTGGGCCCTGGGGGTCCTTATATATGAGATGGCTGCTGGATACCCTCCCTTCTTCGCTGACCAGCCTATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTCCGCTTCCCATCCCACTTCAGCTCTGACCTGAAGGACCTGCTGAGGAACCTGCTGCAGGTGGACCTGACCAAACGCTATGGCAACCTGAAGAACGGCGTCAACGACATCAAAGGACACAAGTGGTTCGCTACAACGGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCCCCGTTCATACCAAAGTGTCGAGGCGCTGGCGACACGAGCAACTTCGACGACTACGAGGAGGAGGAGATCCGCGTTTCCGTAACGGAAAAATGCGCAAAGGAGTTTTCCGAGTTTTAGGACGTGCACACGTGGATATATCAGGGCTAAAACACACATGAAAAATAAGGGGATCTTTGCACTCTTCTAAAGACTTGGGGTTGGAGCAGAGACCATTGTTCAACTATTACTACGTAGTTCCTTCATTCCACAAGGCTGAATGAGGTCGCCATGATCCTTGGGTGCCAATGATAACACCTTCACTGTCACACATACCTGCGTATTAAAGCAGAcacaccactttttttttttaatcccctctacccactctgtttTTGAACTTTGAAGCAGTTGTTGTCTTGGATGTTGTGCTCCCCTTTACAGATGTGATATTTTTCGATTTAGGAGGAAAACCAGAGAGGGTAACTATACAAGAGAGGCCAATTTCATATAAGTCCACACAGTGTAACTTCAAACCGACTTGTCTGTGGCAGTATCACACATGGTTGTGTGGTTTTGTAGGGCAGTGCCTCCAGTCGTCAACAGTTTCGATTTTATGGTCTGTTACAAATCTGATGCTTTTCAATAGAAAATGATTCTCACCTTCTACTAGGACCATGTTTTGGCCAGCTTTCAGAAATAGTATTTGTCCTTTTTGTATATTTTGTCACGAAGACGCATTAAACACCATTGAGTGCTAAGAGCATGACCAAAATACAACTAATTGGGTGACCGAGGAAGAGAAGTCCCTTTCTTTGCCTTTGTCTGTAGAACCCTTTAGACCAATTCCAACGGCCCCACAAAGCGTCCATTCTCTGGCCCATTGGTATTCTAGCCCAGTAATGGGGAAGTCATTGCAGGGAATGGCGAACCCAACTACAAACAGAAAATAACAAAACAGTGGTCagaaaaattctagaaaatgttGAATTTGTATTCtcctttttatttaacattttaatACATGGTTTTTTGTTCCGTAAGATTTCAGGTCCGCTCATAAAAAAGGACACTTTTAAATGAATTTGTGGAGCTGCGGAGCTCCTGATGCGCTAAAGTGAAATCAAGTCCTTTTGAGGTGCGCTCTTtaaattgatcagttcagtgtgtattgtgttgtggctTTTGCCTCAACATTGTTAGTAAAACCAGTATACACTTCATAACAATATATTGATGCTAAGCAGTCTTGCAAACTCCTCAAAAGAAATTGCAAAACACCATTTTTCCCCATGTTTTTCCCTATTGCTGTTCTTGACTTCCCTCCTTTCCTTGTTTGTTTCATTCTTATGACAGAATGTAGTGTTGCAACTTATAGGTATGCATAGTTTGAAATGCTTGATTAAGGTACATTTAGTTTTTTTCTCACAGACATACActggcaaaaaaacaaacaagactGCTCCTTGACCTTTGTATCACATATAATCCAGTCATTGTTCAGCTCATTACATAAGTATATGCATTGTttcatatgtttttatttatacaCATTAGAGATgctaatacattttattttttaaagtgtcAACGTTTGGAAAGTTCTTTTTTGTGATCTTGTAAATAACGGCATACTGCTCTAGGAGTGTTCATGTGTGGGCCTTATATTTGTCAAACTATATAAAGCAGGATAACATCTGA
>XM_036966370.1
ggtggggggggggaagtgTGAGAGCAGTGACCGCTAGCTGCATGTCAGCGAGATATAGAAGAGCCAGGAAGGGGAGTATCTAAAGAAGGGGGGTGGTGAACAGGGATTTGGGCTCCTTCTTTCATATTTGGCTGTAACGTTATCAATTGAATTTCTCTATATTGTTCCAAATTAACGATTTTGCCTACAAGGGGAACGCCACTCAACAACAGCTGTAGCTAGCTACCGCCATCTCCCGCAGTCTGAGCGATCGCCGTGTCTTCCATAAGATGGGAAACGCTGCTACGGCCAAGAAAGGCAACGAGCTGGAGAGCGAGACATTTGTGAAAGAGTTCCTAGCCAAAGCCAAAGAAGACTTCTTACGGAAATGGGAATGTCCACCACAGAGCACGACGGGCCTAGATGACTTTGACAGGCTAAAGACCCTGGGTACAGGCTCGTTTGGAAGAGTCATGCTGGTCAAACATAAAGGAACAGAGCAGTTCTTCGCCATGAAAATACTGGACAAGCAAAAGGACAACTCCAATTTGTACATGGTGATGGAGTATGTTCCAGGAGGAGAGATGTTTTCACATCTAAGACGAATCGGAAGGTTCAGTGAACCCCACGCACGGTTTTACGCGGCCCAGATAGTACTGACATTTGAGTACCTCCATTCACTAGACCTTATCTACAGAGATCTGAAGCCTGAGAACCTTCTAATCGATCAGCATGGCTACATCCAGGTGACAGACTTTGGATTTGCCAAGAGGGTAAAAGGCAGAACCTGGACGTTGTGTGGAACTCCAGAGTACCTGGCGCCCGAGATCATCCTCAGCAAGGGCTACAACAAAGCAGTGGACTGGTGGGCCCTGGGGGTCCTTATATATGAGATGGCTGCTGGATACCCTCCCTTCTTCGCTGACCAGCCTATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTCCGCTTCCCATCCCACTTCAGCTCTGACCTGAAGGACCTGCTGAGGAACCTGCTGCAGGTGGACCTGACCAAACGCTATGGCAACCTGAAGAACGGCGTCAACGACATCAAAGGACACAAGTGGTTCGCTACAACGGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCCCCGTTCATACCAAAGTGTCGAGGCGCTGGCGACACGAGCAACTTCGACGACTACGAGGAGGAGGAGATCCGCGTTTCCGTAACGGAAAAATGCGCAAAGGAGTTTTCCGAGTTTTAGGACGTGCACACGTGGATATATCAGGGCTAAAACACACATGAAAAATAAGGGGATCTTTGCACTCTTCTAAAGACTTGGGGTTGGAGCAGAGACCATTGTTCAACTATTACTACGTAGTTCCTTCATTCCACAAGGCTGAATGAGGTCGCCATGATCCTTGGGTGCCAATGATAACACCTTCACTGTCACACATACCTGCGTATTAAAGCAGAcacaccactttttttttttaatcccctctacccactctgtttTTGAACTTTGAAGCAGTTGTTGTCTTGGATGTTGTGCTCCCCTTTACAGATGTGATATTTTTCGATTTAGGAGGAAAACCAGAGAGGGTAACTATACAAGAGAGGCCAATTTCATATAAGTCCACACAGTGTAACTTCAAACCGACTTGTCTGTGGCAGTATCACACATGGTTGTGTGGTTTTGTAGGGCAGTGCCTCCAGTCGTCAACAGTTTCGATTTTATGGTCTGTTACAAATCTGATGCTTTTCAATAGAAAATGATTCTCACCTTCTACTAGGACCATGTTTTGGCCAGCTTTCAGAAATAGTATTTGTCCTTTTTGTATATTTTGTCACGAAGACGCATTAAACACCATTGAGTGCTAAGAGCATGACCAAAATACAACTAATTGGGTGACCGAGGAAGAGAAGTCCCTTTCTTTGCCTTTGTCTGTAGAACCCTTTAGACCAATTCCAACGGCCCCACAAAGCGTCCATTCTCTGGCCCATTGGTATTCTAGCCCAGTAATGGGGAAGTCATTGCAGGGAATGGCGAACCCAACTACAAACAGAAAATAACAAAACAGTGGTCagaaaaattctagaaaatgttGAATTTGTATTCtcctttttatttaacattttaatACATGGTTTTTTGTTCCGTAAGATTTCAGGTCCGCTCATAAAAAAGGACACTTTTAAATGAATTTGTGGAGCTGCGGAGCTCCTGATGCGCTAAAGTGAAATCAAGTCCTTTTGAGGTGCGCTCTTtaaattgatcagttcagtgtgtattgtgttgtggctTTTGCCTCAACATTGTTAGTAAAACCAGTATACACTTCATAACAATATATTGATGCTAAGCAGTCTTGCAAACTCCTCAAAAGAAATTGCAAAACACCATTTTTCCCCATGTTTTTCCCTATTGCTGTTCTTGACTTCCCTCCTTTCCTTGTTTGTTTCATTCTTATGACAGAATGTAGTGTTGCAACTTATAGGTATGCATAGTTTGAAATGCTTGATTAAGGTACATTTAGTTTTTTTCTCACAGACATACActggcaaaaaaacaaacaagactGCTCCTTGACCTTTGTATCACATATAATCCAGTCATTGTTCAGCTCATTACATAAGTATATGCATTGTttcatatgtttttatttatacaCATTAGAGATgctaatacattttattttttaaagtgtcAACGTTTGGAAAGTTCTTTTTTGTGATCTTGTAAATAACGGCATACTGCTCTAGGAGTGTTCATGTGTGGGCCTTATATTTGTCAAACTATATAAAGCAGGATAACATCTGA
>XM_036966368.1
gtggggggggggaagtgTGAGAGCAGTGACCGCTAGCTGCATGTCAGCGAGATATAGAAGAGCCAGGAAGGGGAGTATCTAAAGAAGGGGGGTGGTGAACAGGGATTTGGGCTCCTTCTTTCATATTTGGCTGTAACGTTATCAATTGAATTTCTCTATATTGTTCCAAATTAACGATTTTGCCTACAAGGGGAACGCCACTCAACAACAGCTGTAGCTAGCTACCGCCATCTCCCGCAGTCTGAGCGATCGCCGTGTCTTCCATAAGATGGGAAACGCTGCTACGGCCAAGAAAGGCAACGAGCTGGAGAGCGAGACATTTGTGAAAGAGTTCCTAGCCAAAGCCAAAGAAGACTTCTTACGGAAATGGGAATGTCCACCACAGAGCACGACGGGCCTAGATGACTTTGACAGGCTAAAGACCCTGGGTACAGGCTCGTTTGGAAGAGTCATGCTGGTCAAACATAAAGGAACAGAGCAGTTCTTCGCCATGAAAATACTGGACAAGCAAAAGGTGGTGAAACTCAAGCAAATAGAACACACGTTAAATGAGAAGAGAATATTGCAGGCCGTGTCTTTTCCCTTCCTCGTCAGACTTGATTATGCCTTCAAGGACAACTCCAATTTGTACATGGTGATGGAGTATGTTCCAGGAGGAGAGATGTTTTCACATCTAAGACGAATCGGAAGGTTCAGTGAACCCCACGCACGGTTTTACGCGGCCCAGATAGTACTGACATTTGAGTACCTCCATTCACTAGACCTTATCTACAGAGATCTGAAGCCTGAGAACCTTCTAATCGATCAGCATGGCTACATCCAGGTGACAGACTTTGGATTTGCCAAGAGGGTAAAAGGCAGAACCTGGACGTTGTGTGGAACTCCAGAGTACCTGGCGCCCGAGATCATCCTCAGCAAGGGCTACAACAAAGCAGTGGACTGGTGGGCCCTGGGGGTCCTTATATATGAGATGGCTGCTGGATACCCTCCCTTCTTCGCTGACCAGCCTATTCAGATCTATGAGAAGATTGTGTCTGGAAAGGTCCGCTTCCCATCCCACTTCAGCTCTGACCTGAAGGACCTGCTGAGGAACCTGCTGCAGGTGGACCTGACCAAACGCTATGGCAACCTGAAGAACGGCGTCAACGACATCAAAGGACACAAGTGGTTCGCTACAACGGACTGGATTGCCATCTACGAGAGGAAGGTGGAAGCCCCGTTCATACCAAAGTGTCGAGGCGCTGGCGACACGAGCAACTTCGACGACTACGAGGAGGAGGAGATCCGCGTTTCCGTAACGGAAAAATGCGCAAAGGAGTTTTCCGAGTTTTAGGACGTGCACACGTGGATATATCAGGGCTAAAACACACATGAAAAATAAGGGGATCTTTGCACTCTTCTAAAGACTTGGGGTTGGAGCAGAGACCATTGTTCAACTATTACTACGTAGTTCCTTCATTCCACAAGGCTGAATGAGGTCGCCATGATCCTTGGGTGCCAATGATAACACCTTCACTGTCACACATACCTGCGTATTAAAGCAGAcacaccactttttttttttaatcccctctacccactctgtttTTGAACTTTGAAGCAGTTGTTGTCTTGGATGTTGTGCTCCCCTTTACAGATGTGATATTTTTCGATTTAGGAGGAAAACCAGAGAGGGTAACTATACAAGAGAGGCCAATTTCATATAAGTCCACACAGTGTAACTTCAAACCGACTTGTCTGTGGCAGTATCACACATGGTTGTGTGGTTTTGTAGGGCAGTGCCTCCAGTCGTCAACAGTTTCGATTTTATGGTCTGTTACAAATCTGATGCTTTTCAATAGAAAATGATTCTCACCTTCTACTAGGACCATGTTTTGGCCAGCTTTCAGAAATAGTATTTGTCCTTTTTGTATATTTTGTCACGAAGACGCATTAAACACCATTGAGTGCTAAGAGCATGACCAAAATACAACTAATTGGGTGACCGAGGAAGAGAAGTCCCTTTCTTTGCCTTTGTCTGTAGAACCCTTTAGACCAATTCCAACGGCCCCACAAAGCGTCCATTCTCTGGCCCATTGGTATTCTAGCCCAGTAATGGGGAAGTCATTGCAGGGAATGGCGAACCCAACTACAAACAGAAAATAACAAAACAGTGGTCagaaaaattctagaaaatgttGAATTTGTATTCtcctttttatttaacattttaatACATGGTTTTTTGTTCCGTAAGATTTCAGGTCCGCTCATAAAAAAGGACACTTTTAAATGAATTTGTGGAGCTGCGGAGCTCCTGATGCGCTAAAGTGAAATCAAGTCCTTTTGAGGTGCGCTCTTtaaattgatcagttcagtgtgtattgtgttgtggctTTTGCCTCAACATTGTTAGTAAAACCAGTATACACTTCATAACAATATATTGATGCTAAGCAGTCTTGCAAACTCCTCAAAAGAAATTGCAAAACACCATTTTTCCCCATGTTTTTCCCTATTGCTGTTCTTGACTTCCCTCCTTTCCTTGTTTGTTTCATTCTTATGACAGAATGTAGTGTTGCAACTTATAGGTATGCATAGTTTGAAATGCTTGATTAAGGTACATTTAGTTTTTTTCTCACAGACATACActggcaaaaaaacaaacaagactGCTCCTTGACCTTTGTATCACATATAATCCAGTCATTGTTCAGCTCATTACATAAGTATATGCATTGTttcatatgtttttatttatacaCATTAGAGATgctaatacattttattttttaaagtgtcAACGTTTGGAAAGTTCTTTTTTGTGATCTTGTAAATAACGGCATACTGCTCTAGGAGTGTTCATGTGTGGGCCTTATATTTGTCAAACTATATAAAGCAGGATAACATCTGA

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit beta-like isoform X1

GO: NA

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966369.1 False 2894 mRNA 0.44 10 14928691 14941630
XM_036966370.1 False 2795 mRNA 0.44 10 14928700 14941630
XM_036966368.1 True 2893 mRNA 0.44 11 14928701 14941630

Neighbor

gene id symbol gene type direction distance location
LOC110508614 LOC106599757 coding upstream 46811 14774001 ~ 14881880 (+)
LOC110508610 LOC106599772 coding upstream 301237 14626005 ~ 14627454 (+)
LOC110508609 LOC105019392 coding upstream 313303 14608465 ~ 14615388 (+)
LOC110508607 LOC106599774 coding upstream 417496 14507547 ~ 14511195 (+)
LOC110508606 LOC106599779 coding upstream 424437 14428971 ~ 14504254 (+)
exosc4 exos4 coding downstream 1879 14943509 ~ 14945337 (+)
LOC110508615 NA coding downstream 4374 14946004 ~ 14949052 (+)
LOC110508619 LOC106599747 coding downstream 15252 14955823 ~ 14958873 (+)
LOC110508620 LOC106599743 coding downstream 43162 14984792 ~ 15024992 (+)
LOC118944875 NA coding downstream 409741 15351371 ~ 15352048 (+)
G2108748 NA non-coding upstream 957 14927452 ~ 14927734 (+)
G2108733 NA non-coding upstream 15508 14912977 ~ 14913183 (+)
G2108494 NA non-coding upstream 76070 14852400 ~ 14852621 (+)
G2108492 NA non-coding upstream 77293 14851143 ~ 14851398 (+)
G2108754 NA non-coding downstream 1209 14942839 ~ 14943057 (+)
G2108751 NA non-coding downstream 10110 14951740 ~ 14951918 (+)
G2108762 NA non-coding downstream 28157 14969787 ~ 14970027 (+)
G2108786 NA non-coding downstream 84314 15025944 ~ 15026155 (+)
G2107033 NA other upstream 1015464 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1785096 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1794206 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1794930 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1801460 13126962 ~ 13127231 (+)
G2109948 NA other downstream 996881 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1006678 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1506482 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 1870964 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2012154 16953784 ~ 16958852 (+)

Expression


Co-expression Network