exosc4 (exos4)


Basic Information

Item Value
gene id exosc4
gene name exos4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14943509 ~ 14945337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589270.2
ctgtTTGTCTCATTACAACCAGCACTAGTAGGTCAAACGAACGACTGAAATGAACGAGTCACTCAGAAAAACGAAAAATCGAGTCAGTGAAAAGATTCGTTCGCGAACTGTACATCACTATTTCGGTTGCCTAAAGCCACCGTATCTACTCCAGTGGGCgtgtgggtaatgtagtgtataacaCACGTgcgtagttttttttttttaatcgccAGTTCGTTCAAACGTTGAAATATGGCAGGCCTGGAGTTATTGTCGGATCAAGGATATCGTCTTGATGGAAGAAAAGCTGCTGAACTGCGGAAAGTACAAGCTCGTATGGGTGTATTTGCCCAAGCTGACGGGTCTGCGTACATAGAACAGGGAAATACCAAAGCGCTGGCAGTTGTGTATGGTCCTCATGAAGTGCGAGGTTCCCGCAGCAAGACCCTCCATGACCGTGCTGTCATCAACTGCCAATACAGCATGGCTACCTTCAGTACAGCTGAAAGGAAGAGAAGACCCCACGGGGACCGCAAGTCCACAGAGATGAGCCTTCACCTCAAGCAGACTTTCGAGGCAGCAGTGTTGACTAATCTGTACCCACGCTCTCAAATAGACATTTATGTCAAGaTCTTGCAGTCAGATGGAGGAAACTACAGCGCGTGTGTGAACGCCGCTACTCTGGCAGTAGTCGATGCGGGCATCCCCATGCGTGACTATGTGTGCGCCTGCACTGCAGGCTTTGTGGATGAGACCCCATTGGCAGACCTGTGCCATGCTGAAGAGAGTGGAGGGGGCACATCACTGGCCCTGGCATTGTTGCCTCGTGGCGGGCACATTGCCCTGCTACAGATGGACGCCCGACTCCACCAGGACCACCTAGAGACACTGATGGAGGCTGCAATGACGGCCTGTAAGGGCGTCAGCAAAGTGTTGGACGAGGTGGTGAGGCAGCATCTACAGGAGGTGTCTGCGCTGACTGGAGAGTGATGTAGCTTGGACTTTGGGGTAGATTGGTCTGCGTGAAAGGCAGGGGAGGTAAGGGAGCAGATggagtgtttttgtttttttattgtacAATCGTGTTATGCTTTTGTATGAAATGCTTTATTAAAAAATTAAATCTAAACCCA

Function

NR:

description
exosome complex component RRP41

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K11600 RRP41, EXOSC4, SKI6; exosome complex component RRP41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589270.2 True 1115 mRNA 0.50 3 14943509 14945337

Neighbor

gene id symbol gene type direction distance location
LOC110508616 LOC106599750 coding upstream 1879 14928691 ~ 14941630 (+)
LOC110508614 LOC106599757 coding upstream 61629 14774001 ~ 14881880 (+)
LOC110508610 LOC106599772 coding upstream 316055 14626005 ~ 14627454 (+)
LOC110508609 LOC105019392 coding upstream 328121 14608465 ~ 14615388 (+)
LOC110508607 LOC106599774 coding upstream 432314 14507547 ~ 14511195 (+)
LOC110508615 NA coding downstream 667 14946004 ~ 14949052 (+)
LOC110508619 LOC106599747 coding downstream 11545 14955823 ~ 14958873 (+)
LOC110508620 LOC106599743 coding downstream 39455 14984792 ~ 15024992 (+)
LOC118944875 NA coding downstream 406034 15351371 ~ 15352048 (+)
LOC110508625 LOC106599735 coding downstream 573993 15519330 ~ 15540665 (+)
G2108754 NA non-coding upstream 452 14942839 ~ 14943057 (+)
G2108748 NA non-coding upstream 15775 14927452 ~ 14927734 (+)
G2108733 NA non-coding upstream 30326 14912977 ~ 14913183 (+)
G2108494 NA non-coding upstream 90888 14852400 ~ 14852621 (+)
G2108751 NA non-coding downstream 6403 14951740 ~ 14951918 (+)
G2108762 NA non-coding downstream 24450 14969787 ~ 14970027 (+)
G2108786 NA non-coding downstream 80607 15025944 ~ 15026155 (+)
G2108832 NA non-coding downstream 152686 15098023 ~ 15098809 (+)
G2107033 NA other upstream 1030282 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1799914 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1809024 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1809748 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1816278 13126962 ~ 13127231 (+)
G2109948 NA other downstream 993174 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1002971 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1502775 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 1867257 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2008447 16953784 ~ 16958852 (+)

Expression


Co-expression Network