LOC110508622 (LOC106599742)


Basic Information

Item Value
gene id LOC110508622
gene name LOC106599742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15313703 ~ 15315936 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589274.2
GCTCACTCTGCACTGCCTGACCTACAATTGGACAGCTCGGATTCTCTTTGGGAGGAGCATACTGGCAGCAAAAAGGGGGAAAGAAGTTAACAGCGCAAAAGTATTCTGTAGTGACGGATGCCCAAAGTTCATACGTTTTTCAATGCGCGCCTCAGCACACTGAGATGGAAACCGCTTAAACCCTATTAAGACCTGGTACAGTGCATTCCTGATAGTATTATTTGTCAAGTGACAAGACAGGAACTCCTGCTTTGAGCGCCTCAACTTTTCAGAAAGAAAAAGTGGAGCTCTCCGTCTGCATACTTTGGGAAGTTCGTTTTAGGCAGGAGCATAGTTGAGCTGTGGGGAGAAGACATGCAGGCGCGCTACTCCGTCTCGAGCCCCAACTCTCTGGGCGTCGTGCCTTACATTAGTAGCGACCAAAGCTACTACCGGGCCGCCGCCGGTGGAGGATACACCGGGATGCCGGCCCCTATGAGTATGTACTCTCACGCGGCCCACGACCAGTACCCGGCCAGCATGGCGCGAGCCTATGGACCGTATACCCCGCAGCCCCAGCCGAAGGATATGGTGAAACCCCCGTACAGTTACATTGCGCTCATTACTATGGCTATCCAGAATTCGCCTGACAAGAAGGTGACCCTGAACGGGATTTATCAGTTTATCATGGAGAGGTTCCCGTTCTACCGAGACAACAAACAGGGCTGGCAGAACAGCATCAGgcacaatctctctctcaatgagtgttttgtcaaagttccCCGTGATGACAAAAAGCCTGGCAAGGGGAGCTACTGGACCCTGGACCCGGACTCATACAACATGTTCGAGAACGGCAGCTTCTTGAGGAGGAGGCGACGGTTCAAGAAGAAAGACGCAATGAAAGACAAGGATGACCGGGGTGCTAAGGAGACGCCGTCTAGACAGGGCCGGGACACGGAACAGCCAGTGCAGGGCTCCCAGCCAGTCCGGATCCAGGATATTAAGACCGAGAACGGTAACGCGACACCCCCACAGGCCGCCTCGCCCTCCCTGAGCACTGTGCCCAAAGTCGAGAGTcccgacagcagcagcagcagcatgtcCAGCAACGGCAGCCCCCACAGCATCCCGTCCAACAGGTCCATCGGCATGGAGAGCTCCgagcagcagcagcaccaccaccagcACAGCCAGGCCCAGGGCTTCAGTGTGGACAACATCATGACTTCCCTCCGGGGGTCCCCACAGGATGCCACAGAGCTTGCCCCGTCCCTCATCGCCTCGTCCAGGACAGGTATAACACCGTCTTTGTCCCTAAACTATTCACCGAACCAGACGTCAGTCTATAGCTCACCCTGTAACCAAAACTCTATCTCCACTACCTCGAATGCTAGCTACCATTGTAATATGCAAGCCATGAGTTTATACGCCGGGGATAGATCTAGCCACCTAGCTCCGACTACCACCGTGGATGAAACGTTGCCAGATTACTCCATCACGACCACCTCCTCCCCTCTGGCCCACGGCAATCTAAACACTGGGCAGGAGGGCCACCATCCCCACCAAGGGCGGCTTCCCTCATGGTACCTCAACCAGGCCGGGGACCTGGGCCACATCGGGGCGACCTACCCCGCCCAGCAGCAGAACTTCCACTCCGTGCGCGAGATGTTCGAATCTCAAAGAATTGGCTTGAATAATTCTCCTGTGAACGGGAATAACAGCTGTCAAATGTCATTTCCCCCTAGCCAATCCATCTACCGCACTTCAGGAGCTTTCGTGTATGACTGCAGCAAGTTCTGACCAAATTAGGTTTTCATTGTATTCTTCATAAAAATATCGTGAGTCGTTTTACCTACCACCTGCCACGACGATGGACTAAAACGAAACAGAACACAAATAATGGACAGATAAAAAAAGACATGATCTTGGTTTGTAAAGAACAGTGTTACGGCTAATAACACGTAAGTCTCTTCTCGCTTTTGTGACATGTTTTAAAGATAAGAATATGCCAGTCTTTCATGGACATATTATTACGTGTAAATTGCATATAGTAATTTATTTCTAAACTGCCGGAAATTATGGACCAAACACCAAAAAGGGTTTCTAAATTGAAATGCCTTAATTGTCCAAATATGTTCCATTATAAAAAGCGGAACTTGTATATCGTCCTACTCTTTCAAAGTTTCTTCTTTTGTTGAAAAGTATTCTGAAGGAATTGCATTGTTTGTTTAATAAATTGCCATTTTATTTGA

Function

NR:

description
forkhead box C1-A

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09396 FOXC; forkhead box protein C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589274.2 True 2234 mRNA 0.50 1 15313703 15315936

Neighbor

gene id symbol gene type direction distance location
LOC110508618 LOC106599747 coding downstream 341947 14951713 ~ 14971756 (-)
LOC110508613 NA coding downstream 551081 14761477 ~ 14762622 (-)
LOC110508612 LOC106599764 coding downstream 661112 14629535 ~ 14652591 (-)
LOC110508608 LOC106599765 coding downstream 687802 14615917 ~ 14625901 (-)
LOC110508166 NA coding downstream 792733 14516805 ~ 14520970 (-)
LOC110508623 LOC106599911 coding upstream 16331 15332267 ~ 15335367 (-)
LOC110508624 LOC106599739 coding upstream 23349 15339285 ~ 15341799 (-)
irf-10 LOC106569155 coding upstream 170137 15486073 ~ 15502959 (-)
LOC110508170 LOC106599728 coding upstream 235752 15551688 ~ 15555494 (-)
LOC110508626 LOC106599727 coding upstream 305728 15621664 ~ 15700456 (-)
G2109212 NA non-coding downstream 6223 15307257 ~ 15307480 (-)
G2109193 NA non-coding downstream 16140 15297246 ~ 15297563 (-)
G2109163 NA non-coding downstream 40017 15273327 ~ 15273686 (-)
G2109156 NA non-coding downstream 43514 15269987 ~ 15270189 (-)
G2108970 NA non-coding downstream 294267 15018770 ~ 15019436 (-)
G2109228 NA non-coding upstream 4742 15320678 ~ 15320880 (-)
G2109634 NA non-coding upstream 192904 15508840 ~ 15509110 (-)
G2109672 NA non-coding upstream 245184 15561120 ~ 15561394 (-)
G2109675 NA non-coding upstream 248506 15564442 ~ 15564642 (-)
G2109684 NA non-coding upstream 260689 15576625 ~ 15576840 (-)
G2105419 LOC104953893 other downstream 3813631 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 4419623 10886198 ~ 10894141 (-)
G2103920 NA other downstream 4605204 10708012 ~ 10708499 (-)
G2103257 NA other downstream 5107027 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 5198306 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 223832 15539768 ~ 15554897 (-)
G2109705 NA other upstream 287749 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 387400 15703333 ~ 15793545 (-)
G2110939 NA other upstream 1483454 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 1940272 17254319 ~ 17260420 (-)

Expression


Co-expression Network