irf-10 (LOC106569155)


Basic Information

Item Value
gene id irf-10
gene name LOC106569155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15486073 ~ 15502959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588585.2
AACTTTATCAAATACAAAACAACTTTATTTGTCCAACTGCTACTGTATCTCTGGGTTTAACTGAGTGCTCACAAGTGAACCCATGTGTGACGATGGTAAGCAGAAGACAGCTAGATAACGCAGAATGCTATTCTTGAACTTCCCCAAACAACAATCTTGATTTGAATGTATTGTGTTTGTTAAGCTATCTGAGGTATATCTGGTGAGGTTGAGGGTCTTCTGAGAAATACAGAGGATATTCAATCTCTAATGTTGCCTCCACAGCATACCCTCCTTTGTTTGACTTCCAATTCAATGTATTGTCTTTTAATATGGCCTTCTGCTGATGTCCTTTTATCTCTATCATGGCCATACCCACtcctatccatctctccttcaccatccatccctctctccatggaGTCTGGCGGGTGTGTCTCGGAGTGTCACCCTGGTGGTGGCCTACATCATGACGGTGACAGGGCTGGGCTGGCAGGAGGCTCTGGCTGCTGTGAGGGTGGCTCGGCCCTGCGCTGGGCCCAACCTGGGCTTCCAGCGCCAGCTCCAGGAGTTTGAGACCAATCACGCTGACCAGTTCAGGGAGTGGCTTTGGCAATTATACAAAGAGAGGCCCTTCAACGACGAGGATGACATTCGCATCCTGTTGGCCAAGAGTTTCAAACCCAatggggtgggggtggaggtgaATGTTGAGCCGTCCACCCCTCCAGGATTGCAGGGTACCTGAGATCCCTTATCCAGGTCTGAAGGCTTACACTGTGGGATGATACCACTCTGGCCCCTagagggtgggtggggggttCTTTCTCTGTCGGTACGCTGttagaccagtctctctctctgttgttgtccCTCTACTGGAGAAGACTAGGGGAGGATGGGTCAATGGATGCACCATTTTGAGAAtgtttattgatgttttattatGGCTAATACCACTGGTTTTATTACCCCTAATTTATGTACAGTGTTTAGTTATGTATGGCACGTTCAGCATTTGTACTTGTTTTTCTAAACCTCGAAAATGTATGATATTGTTGTCATGTCATTTGTTCCTACTTGAAGCAACGTCAGCTTTTTGTGCATTAATACAAGGATTAAAGATGAAATTATGACTGAGATGAAATTGTTATTAACTACCGGTAGGTCTGCTATGCTGTCAGATACAATGTGATAATAGACAGACATTCTCTGCTCTGTTTACCTCTGTTTCTGGGTCTATTTCCTGTCATGCAAGGAAGCCTTGCATGACAGCAGTAAAAACAACATTTTCAGCCCCCTCTGTCAGCATTGGAGGGATACAGAGAGCTGGGCATGAGTGCCACTGGCTCTGAAAAGGGATGCATTTGAATTTGTCTGTTGCCTACCTACCCACGCACCTACATATAATGTAGCCCTTCTCCAATAGATATAGCATGCAGCCAATGAATTAGACCCAGTTGATATTAAAGGTTATGTGCATGACACAACCACTGGAGGGCAGCAGTATAACCACAGTAAAACAAATTGAGGCTATATTGTATATGtgaatgaaatgaaaacacaCTCCACTAAAATTTCCCATATTTTCATCAATGTCATAGGCTACTGTAATTAACTTGCAGGATGATTGAGTACATTTTAATTGCCATATAACTACATTATGAAAACAACAGCACAAGAACAATTCTATTTTTTGACTTTATAAAACAGTATTTAAAGCATAAACATATAATGGTAATGGAATCTATTGACATAATTACGATTTTAGGGAGTTTCTTTTTTGATATTGACACAGGTAATTGTTCCATTCCATGGTGACGTTTGCTTCCTGTGTTTGCCACTCGAGAGGGATTCCCCATCGACTGTAGGTTGTTCTCGATAAGCTTCAGAGAACTGCAGCTCCTCCCAGTCGCGGCACCGACACATCAAGATGTGACTGACTATATGAATAGGGCACCCGATGCTCTCACTTGAGAACTGTGTCAGTGAAATCGATTTCATCACTTGTCAGAGAAGCTCACATGGTTAGAGAGATGAACTTAGAGGGGGACAGCGGTCTGTCAGTGAGCTGCGGCAACGGGAAACTTAGACAGTGGCTGATCGATCAGATTAACAGCAGTAGCTATCCCGGACTGGTTTGGGAGAATGGCGAGAAAAGCATTTTCAGGATCCCGTGGAAACATGCGGGCAAACAGGACTACAATCGAGAGGAGGATGCTGCACTCTTCAAGGCTTGGGCATTGTTCAAAGGGAAACACAGGGAAGGAGTGGACAAACCAGACCCCCCCACATGGAAGACTAGACTGCGATGTGCTCTTAACAAAAGTAATGACTTTGACGAGCTGGTGGAGAGAAGCCAACTTGATATATCAGACCCTTACAAAGTCTACAGAATCATACCGGAGGGAGCTAAGAGAGGGATCAAGATGGCAGAGACAACGTTACATATGAGCTCAGAGAGCAACTACCCCATGCACTCTCTGTACCCAACTCTACACAGCCAGGTGTCTGGCAGCTACATAGTTCCccaggagaggaaggagtggaaGGAGTACAGCCACACACAGGACCACCAGCAGCAACCTCAGCCTCAGCACCATCAGCCACCCCACGTTGAGCTGCAGTATAGCCAGTGCCACTACCCATCGCCACTCAGCCGACTGTGGCACACCGGGCCACACACAGATAACGGTTATCAGTTCACTGGCTCCTTCTATTCATACTCCTCCTCAGAGTCCCACCCCACAGCATTTACAATGGACCACAACATGGCCACCCTTTCTGactTCCGACTGCATGTGTCCCTGTTCTACCGTGAGGCTTTGGTCAAGAAGGTAACCACCTCTGGTCCTGAAGGCTGCCAGATCAcctcgtcttcctcctcctcttcctcctcttcctctccgtcCTCCCCCTGCCCTGGGGACAAGCTGTACAGCGGTGCAGAAGTGGTGCTGTTCCCGTCCCCTTACCCCGAGTCACAGAGGAGGGGGGCGGAGAAGCTACCCAACGTCCTGGAGAGGGGCGTGCTCCTGTGGATGGCGTCAGATGGGCTCTATGCCAAGCGGCTTTGCCAGAGCCGAGTGTACTGGGAGGGCCCGCTGGCCCCGTACACGGACAAACCCAACAAACTGGAGAAAGAACAGACCTGCAAGCTGTTTGACACTCAGCAGTTCCTCACTGaGCTGCAGGGGTATGCCCAACATGGCCGTCCCATGCCcaggcaccaggtggtgctgtgTTTCGGTGACGAGTACCCAGATCCCCAACGCCAGACCAAGATGATCACagcacagGTGGAGCCAATGTTTGCCAGGGAACTGTTGTACTTCACCCAGCAGAACAGCAGTCACTACCTTAGGGACTATGAGCTCCAGGGACACACGGAGAGCTCCCCTCCAGCTCCAGGAGACTACCAGAGGACCCTCCAACACATGCAGGAGTAACACATACAAACATGCCTCAGGAGCCATGGACATGCATGTAGATAGACCAATGAGCTTAACTTCACAACTACTGTAATGTATATGGTATACTCAGGTCTTGGACTAAAATGCCTCACTGTGATTTCAATGTAAGACTGGACTGTGCCTCCATCATCAGTGTCAACAGTTTGAGCCAAAGATGATCAAAGATGAAAGTATCTACCCTAGTTTGTACAGCCTTACAATTATGTTTCTAATCATCATTTATTTgtctttttttaaacaatatGAAAAACTGATTAAGTATTTTGATTTGATCTGTTGTAATAGTTTTGTTTCAATATCACATCTGGATGCCAGTGTCTAGGTGAATgtgtttgattgattggttgattttgCAAAACCTGCTCAAGGTAGCTGTAGATAATTGAAGTGATTGGTTTTAGGCTGACCCTAGCATTGGTTCCCACTTGATCCTTGATACATTATAGCTAcaaagtgtgtggtgtgtgtaggcTTATCACAAGAGATAGTGTGTTTTCCGGTGACATCTGTAGGAAACCCACAACACCCCCTGAcctgtggtagtggtgtggtgggCGGAGGTAGcctgcccctgtctctctctccccatctcgctctctttctttgtctccctctaCATTTTCTCTCTTGCTAACACTTGCTTTCAACGAGACAgggatgcatgtgtttgtgtatgtttgtgtgtatgtgtgtgtgtgcgggcgtgCATGTATGTGTCTGCATGTGAGATTGTGACAGTGTATAGGATGCGGTTTGAGGGGACGAGGACCAATGTGAAGCAGAGGGTGACTGACagaagcaggaagcaccagtcaCAGGTGCACAGGAAGTGGAGTAGCCctcaggagaaagggagaaaaggCTTAATGTGACCCATTTCCAGAAGCTAGGCATATATTgaacatcactacttcacaggagaggcattttaaggaaaaacatttttttttatatcaaaATACTTTTTGGGGCAGAAATGCATTTTGGAGCatatgaactttcatgtgccttaataacaaacttgtatgccatctgtaaatacaaataaaatggttaaattacgagcctagttggtttagccacgaaaaaaagacaggaaccttccgatagccatgattggctgagatatgccgagagatgagttcggattgatCTGCCATGAAGCACGCTTCTGTCCATAACATAAActgctcagtatgtgttgatAATCCATGCTACGGCGGCCGTTTTGAAATAGATAACattagccatggagaactgcaaaagGGTTGCTACTGTTCTCAACAACATTgttgccctgaatttagcaggcacTATAGACAAGATCtgtgggaaaaagttgtgatggactactttctgcacacggtcagtgtgaaccagagtgacaTGACACAACGAGCCAAATaagctgtagctagctacaaaTAAAGCTACAAATAAAATGGAAAAGACACAGGATGTCTTAGTTAGTTAAAGTGGTTCCAGTCTGGagtgaagcgttcatccatgtatgcGATAAGTGTCCAGCTACATCTTTCAGGTATTTTACTTTTCAAacttttcattgcaagttaaagcttattttttgctagctagcaaacattagCTTACTGGCTCGCTACCTAATGTTATGTGTATGTTctgtatagtaatattatttgcatctcagaaatccatttgcattgctagttatagcttaatgttagttggttagctttagctacctgcagattcatactacagtcacagacagaccaatgagacagatatttcaccggatgtataaatgtgaagcatccggttggcgtttccactgTCTACCaaatatgtgacccgtttcaggaaactaggcatatgtcgcgggtcactacttcacatgaGAGCCATTTGAATGTAATCTTTTTCTATTTTTATCTAAATGCatattttggcagaaatgccttctggagcttgtgaactttcatgtgccttaataacaaacatgtatgccatctgtaaatacgaataaaattgtta
>NM_001310139.1
GTGAAATCGATTTCATCACTTGTCAGAGAAGCTCACATGGTTAGAGAGATGAACTTAGAGGGGGACAGCGGTCTGTCAGTGAGCTGCGGCAACGGGAAACTTAGACAGTGGCTGATCGATCAGATTAACAGCAGTAGCTATCCCGGACTGGTTTGGGAGAATGGCGAGAAAAGCATTTTCAGGATCCCGTGGAAACATGCGGGCAAACAGGACTACAATCGAGAGGAGGATGCTGCACTCTTCAAGGCTTGGGCATTGTTCAAAGGGAAACACAGGGAAGGAGTGGACAAACCAGACCCCCCCACATGGAAGACTAGACTGCGATGTGCTCTTAACAAAAGTAATGACTTTGACGAGCTGGTGGAGAGAAGCCAACTTGATATATCAGACCCTTACAAAGTCTACAGAATCATACCGGAGGGAGCTAAGAGAGGGATCAAGATGGCAGAGACAACGTTACATATGAGCTCAGAGAGCAACTACCCCATGCACTCTCTGTACCCAACTCTACACAGCCAGGTGTCTGGCAGCTACATAGTTCCccaggagaggaaggagtggaaGGAGTACAGCCACACACAGGACCACCAGCAGCAACCTCAGCCTCAGCACCATCAGCCACCCCACGTTGAGCTGCAGTATAGCCAGTGCCACTACCCATCGCCACTCAGCCGACTGTGGCACACCGGGCCACACACAGATAACGGTTATCAGTTCACTGGCTCCTTCTATTCATACTCCTCCTCAGAGTCCCACCCCACAGCATTTACAATGGACCACAACATGGCCACCCTTTCTGactTCCGACTGCATGTGTCCCTGTTCTACCGTGAGGCTTTGGTCAAGAAGGTAACCACCTCTGGTCCTGAAGGCTGCCAGATCAcctcgtcttcctcctcctcttcctcctcttcctctccgtcCTCCCCCTGCCCTGGGGACAAGCTGTACAGCGGTGCAGAAGTGGTGCTGTTCCCGTCCCCTTACCCCGAGTCACAGAGGAGGGGGGCGGAGAAGCTACCCAACGTCCTGGAGAGGGGCGTGCTCCTGTGGATGGCGTCAGATGGGCTCTATGCCAAGCGGCTTTGCCAGAGCCGAGTGTACTGGGAGGGCCCGCTGGCCCCGTACACGGACAAACCCAACAAACTGGAGAAAGAACAGACCTGCAAGCTGTTTGACACTCAGCAGTTCCTCACTGaGCTGCAGGGGTATGCCCAACATGGCCGTCCCATGCCcaggcaccaggtggtgctgtgTTTCGGTGACGAGTACCCAGATCCCCAACGCCAGACCAAGATGATCACagcacagGTGGAGCCAATGTTTGCCAGGGAACTGTTGTACTTCACCCAGCAGAACAGCAGTCACTACCTTAGGGACTATGAGCTCCAGGGACACACGGAGAGCTCCCCTCCAGCTCCAGGAGACTACCAGAGGACCCTCCAACACATGCAGGAGTAACACATACAAACATGCCTCAGGAGCCATGGACATGCATGTAGATAGACCAATGAGCTTAACTTCACAACTACTGTAATGTATATGGTATACTCAGGTCTTGGACTAAAATGCCTCACTGTGATTTCAATGTAAGACTGGACTGTGCCTCCATCATCAGTGTCAACAGTTTGAGCCAAAGATGATCAAAGATGAAAGTATCTACCCTAGTTTGTACAGCCTTACAATTATGTTTCTAATCATCATTTATTTgtctttttttaaacaatatGAAAAACTGATTAAGTATTTTGATTTGATCTGTTGTAATAGTTTTGTTTCAATATCACATCTGGATGCCAGTG
>XM_021588587.2
atttaaatattttgattattcatatatattttttaaaatatatatttttagaaatAGATTCGGCTCTTCTGATATGCGAGCCAGCTTCCAacgttcacctacaagagccGGCTCTTAGAGCCGTTCGTTCGTGAAAGACCCATCACTATTTGGCACCACCACGCTGTTGCGGACTGTGTGAGGTACTCGCTCGCAATTTGGGGAGCTTTTGGGAAAGCCTTTGGAGAACTACTTCTCGAGACAAGAGTGCAACAATATTTTACGTAATTTTCCTTCCATTCGTTGGTTCTACAGACGTATTTGATTTCAATGGGTAATGGGCTCAATAAGGTCCTGCCTGACTTGTACTTGGGAAACTTCAAAGATGCGAGGGACAGGGAACAGTTAACGAGGAACAACATCACACACATCCTCTCCATCCATGACAGTGCAGCCCCTATCCTGCCGGGGATGACTTATCTGTGCATCTCAGCAGCAGACCTGCCCACACAAAACCTgAGAATGCACTTTAAACAGAGCATCATGTTCATCCACGAGTCCCGTCTCAAAGGAGAGGGTTGTCTGGTCCACTGTCTGGCGGGTGTGTCTCGGAGTGTCACCCTGGTGGTGGCCTACATCATGACGGTGACAGGGCTGGGCTGGCAGGAGGCTCTGGCTGCTGTGAGGGTGGCTCGGCCCTGCGCTGGGCCCAACCTGGGCTTCCAGCGCCAGCTCCAGGAGTTTGAGACCAATCACGCTGACCAGTTCAGGGAGTGGCTTTGGCAATTATACAAAGAGAGGCCCTTCAACGACGAGGATGACATTCGCATCCTGTTGGCCAAGAGTTTCAAACCCAatggggtgggggtggaggtgaATGTTGAGCCGTCCACCCCTCCAGGATTGCAGGGTACCTGAGATCCCTTATCCAGGTCTGAAGGCTTACACTGTGGGATGATACCACTCTGGCCCCTagagggtgggtggggggttCTTTCTCTGTCGGTACGCTGttagaccagtctctctctctgttgttgtccCTCTACTGGAGAAGACTAGGGGAGGATGGGTCAATGGATGCACCATTTTGAGAAtgtttattgatgttttattatGGCTAATACCACTGGTTTTATTACCCCTAATTTATGTACAGTGTTTAGTTATGTATGGCACGTTCAGCATTTGTACTTGTTTTTCTAAACCTCGAAAATGTATGATATTGTTGTCATGTCATTTGTTCCTACTTGAAGCAACGTCAGCTTTTTGTGCATTAATACAAGGATTAAAGATGAAATTATGACTGAGATGAAATTGTTATTAACTACCGGTAGGTCTGCTATGCTGTCAGATACAATGTGATAATAGACAGACATTCTCTGCTCTGTTTACCTCTGTTTCTGGGTCTATTTCCTGTCATGCAAGGAAGCCTTGCATGACAGCAGTAAAAACAACATTTTCAGCCCCCTCTGTCAGCATTGGAGGGATACAGAGAGCTGGGCATGAGTGCCACTGGCTCTGAAAAGGGATGCATTTGAATTTGTCTGTTGCCTACCTACCCACGCACCTACATATAATGTAGCCCTTCTCCAATAGATATAGCATGCAGCCAATGAATTAGACCCAGTTGATATTAAAGGTTATGTGCATGACACAACCACTGGAGGGCAGCAGTATAACCACAGTAAAACAAATTGAGGCTATATTGTATATGtgaatgaaatgaaaacacaCTCCACTAAAATTTCCCATATTTTCATCAATGTCATAGGCTACTGTAATTAACTTGCAGGATGATTGAGTACATTTTAATTGCCATATAACTACATTATGAAAACAACAGCACAAGAACAATTCTATTTTTTGACTTTATAAAACAGTATTTAAAGCATAAACATATAATGGTAATGGAATCTATTGACATAATTACGATTTTAGGGAGTTTCTTTTTTGATATTGACACAGGTAATTGTTCCATTCCATGGTGACGTTTGCTTCCTGTGTTTGCCACTCGAGAGGGATTCCCCATCGACTGTAGGTTGTT

Function

NR:

description
interferon regulatory factor 10 isoform X3

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588585.2 False 5468 mRNA 0.45 10 15486073 15499269
NM_001310139.1 False 1802 mRNA 0.51 9 15487772 15496663
XM_021588587.2 True 2026 mRNA 0.44 7 15496775 15502959

Neighbor

gene id symbol gene type direction distance location
LOC110508624 LOC106599739 coding downstream 144274 15339285 ~ 15341799 (-)
LOC110508623 LOC106599911 coding downstream 150706 15332267 ~ 15335367 (-)
LOC110508622 LOC106599742 coding downstream 170137 15313703 ~ 15315936 (-)
LOC110508618 LOC106599747 coding downstream 514317 14951713 ~ 14971756 (-)
LOC110508613 NA coding downstream 723451 14761477 ~ 14762622 (-)
LOC110508170 LOC106599728 coding upstream 48729 15551688 ~ 15555494 (-)
LOC110508626 LOC106599727 coding upstream 118705 15621664 ~ 15700456 (-)
LOC110508627 LOC106599725 coding upstream 200374 15703333 ~ 15793545 (-)
LOC110508632 igfbp-3b2 coding upstream 405483 15908442 ~ 15920850 (-)
LOC110508633 LOC106599720 coding upstream 431226 15934185 ~ 16017950 (-)
G2109228 NA non-coding downstream 165193 15320678 ~ 15320880 (-)
G2109212 NA non-coding downstream 178593 15307257 ~ 15307480 (-)
G2109193 NA non-coding downstream 188510 15297246 ~ 15297563 (-)
G2109163 NA non-coding downstream 212387 15273327 ~ 15273686 (-)
G2109156 NA non-coding downstream 215884 15269987 ~ 15270189 (-)
G2109634 NA non-coding upstream 5881 15508840 ~ 15509110 (-)
G2109672 NA non-coding upstream 58161 15561120 ~ 15561394 (-)
G2109675 NA non-coding upstream 61483 15564442 ~ 15564642 (-)
G2109684 NA non-coding upstream 73666 15576625 ~ 15576840 (-)
G2109700 NA non-coding upstream 93770 15596729 ~ 15596940 (-)
G2105419 LOC104953893 other downstream 3986001 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 4591993 10886198 ~ 10894141 (-)
G2103920 NA other downstream 4777574 10708012 ~ 10708499 (-)
G2103257 NA other downstream 5279397 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 5370676 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 36809 15539768 ~ 15554897 (-)
G2109705 NA other upstream 100726 15603685 ~ 15604463 (-)
G2110939 NA other upstream 1296431 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 1753249 17254319 ~ 17260420 (-)

Expression


Co-expression Network