LOC110508637 (LOC106599711)


Basic Information

Item Value
gene id LOC110508637
gene name LOC106599711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16143163 ~ 16151757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589299.2
CGTCGAGGCGCCGCCTATTGCAGTTGGTATGATCTCAGAAAAGTTGTGTCTACACCTTCGAAGAGGCCAAAGTCCAATGCAGAATAGAAAATACTAACCGCGGATTTAAAGCATTGTACTTCAAGAGGGGAACGTTTTACTGAATTGCAATGGCCCGTGTAGAAACTGTTGTTATATTGTTGCCGTTCATACTAACGTTTATATGTGTGGTGGCAGTAGAAAGCGGCGGGCTGAACCTGAGAAGACAGAAGAGAGAATGGATCATTCCTCCTAAAACGTTGAAGGAGAATGTAGATTACAGTAACAGGGAGTACATCGCAAAGATTCGTTCTGATGAGCAGTACAAGTCAAGAGTGACGTACTCACTGACCGGGATCGGTGCAGACCAAAACCCCGTAAACTTATTCACCGTCAACCCAGATAAAGGCCTTGTCAGAATCCACGGCATTCTGGACAGAGAGAAGATCGCTTCCTACCATTTACTTGGAGTAGCGAAGTACAACAATGGAAGCCGTGCAGAGAAGGACATTGAACTGAATATTTTTGTTGAGGACCAGAATGACTGCCCACCAGTGTTCGTTTTTGGCCAATCTGGATCCATCAATGAGTCCAGTGCTGCAGAGACCGTTGTCATGAAAGTGACTGCCACAGATGCGGATGAAGTGAACACTCTACACTCTCAGATTTACTACAGCATAGTGGAGAAGAGTGCTTCAGATAAGATGTTCGCCATCAACTACCAGACTGGAGAGATACTGGTTCGCAGGACTACACTggacagagagACTCAAGACACCTACACCCTGACTGTAAAAGGTTCAGACATGAACGGAGCATTCGGAGGAAACACGGGAACAGCAGAAGTTGTGATTAAAATCCTGGACATCAATGACAACATCCCCACCCTGGAGAAAGAATCTTACGAGGGCAGTGTGGAGGAGAACACGGTCGGTGTGGAAGTACTGAGGATCAAAGCCATTGATCTGGATCTGATGTACACTGAGAACTGGCTGTCTGTGTTCACCATCATTACAGGCAATGAGGCCGGCTACTTCAACATCACCACAGACGCTAAGACCAACGAAGGCATAATATGGATAACCAAGGCACTGGACTATGAGGAGCTGAAAGTGCTCAACCTTGCTATACGTGTTTCCAACAAAGCAGAGTACTACTTTGGCTCCTCCAAAGGATTAGAGGATATGGGAAAAGCTTACCCCATCAAGATCAATGTGATCAACCAGAAAGAGGGCCCCAAATTCAAGCCAACGGTTAAAGTGGTGACCATCTCTGAGGACTCCAGCTTGGTCACCATTAACAAGGTTATCACTACCTACACAGCCATCGACAGCGACACATTACAGATCGCTACCAATGTCAGGTATGCCAAAATATATGACGAAGACCACTGGCTGATCATAGATGAAAAGACAGCGGAGATCAAGCTGAACAAACTGCCTGATCGGGAGTCCAAATACCTGGTCAATGGAACATACTACGCCAAGATAATAGCCATCACAACAGATCTGCCATCCAAAACGGCCACAGGGACAATAGCCATCCAGGTGGAAGACTTTAACGACCACTGTCCCACGCTGACAGCTACGACTACAACCATGTGTCTGGGGGATACCGCTGTGTACGTCACGGCTGTGGATGGGGATGCCTTCCCCAACGGAGCTCCCTTCAAGTTCAGAGTGATTCAGGATGACAGCAAACAGAAGTGGATGGTGGAGCACCTCAATGCCACCACTGCCATTTTACGAGACCATGCCCATATGTGGCCAGGTCACTACAAGGTTGCTGTGGAGATCAGTGACCAGCAGGGGAAGGCCTGTGCTGACACCCAGGTTCTGAACGTGGTTGTGTGTACCTGTGATCAGGTCAATAAGGTCTGCATCGAGCGGCGGACGGGCACTGACATCACGTTAGGAGCGCCTGCCATCCTGCTGCTCCTCCTGGGCCTCCTGCTGTTGCTACTGGTTCCTCTCCTGCTGCTGTTCTGTCTATGTGGAGGAGCAGCGGCCATTGGAGACTTTAAGCCCATCCCGTTTGACACGAAAGAACACCTGATTGCATATCACACTGAAGGACAAGGAGAAGACAAGGAAGTTCCTCTCCTGAACGTTCCCGTGGAGTTGGAGCAATGCCCCATCAAAACTGTGAATGTAGGGAAGTACGGGGGAAATGCGGGATTCATAGGAAGAGTAGGGGAGAtaggaggagcagcaggaggcGTGTCAGGGGACGGCTTCACCTCATCCTCAATGTTCACAGGAGCGCACCAACAGTACCATGGCTTCCACCAGCCCAGTGGCAGATTAGAGGTGGACTATGGCATGGGCGGAGGAATCATGACAGAACATCATGAACACTCAATGTTCTCCAGATTACCTGCTGGTGCTTACGACGGGATGGCACTCTCTGAGGAAGTCCTAGAGGAGTACTACTCTGCAAAAGCCAATCACACTGCGCAGATCGACCAACAGAGAGATGCCCTGCTGATTTACGACTATGAAGGTCAGGGGTCACCGGTAGGGTCTGTGGGCTGCTGCAGTCTACTGGGGGCTGATGATGACTTGGACTTCCTCAACGACCTGGGGCACAAGTTCAAGACCCTGGCCCAGATCTGCCAGGGGTCGATAGCTATGGAGGCGGAGACTGTCAATGTGTCTGTGTCACCCACTCGTCCTAGACCTACCACATCCATTCACACAGAGGTCAGCAGAAATACTGCTCTCAATGTCAATACCCTGAACAcctccgtcaccacctccaccccCTCCGTCCCCCTACAGGAGAGCCTGATTACTCGGGACCAGGGATCAGTCACCATCCCCAGGTCTCATATCCAGGAGAACATGGTGATCCCCAGGCAGACCGTCCTCATCCAGCAGCCCACCATGTACTATGCCGCTGCCCCCACCATGTACATGGTGGAGCCTCAGCCCCAGTTGTTGCTggtggagcagagaggaggaggtggttatGTCCATGCCCAGCAGGCGGTAGGCCATGTGGGGGTAGGGACCGGTCAGGGGATGGTGCAGACAGGAGGGCTCCATGGTTCTCAGGGTATGCTGCTAGTAGAGAAGCAGATGGGGGTGGGTGGTGGGGGAGGCCAGGGTCATGTCGTTATGGGCGGAGGCCAGTTCTTACAGGGAGCCGGCCAGACTATTACTGGGGGAGGTCACGTTATTACAGAGACGAGCCAAACCATTACGCAGGGAGGCCAGATTCTACAGGGGGCAGGGCAGACCATGATTGGAGGAGGCCATCTCTCGCCAGGAGGAAGCTTCTCACAGGGTTCTAGGAAAGTGCTGGTTGTTGAGAGCGGGTCCGGGCCAGCCTCTGCAGTAGGGGGCAGTGCAGGCTTATGGGCACCCCAGGTCACCCTGCAGAGAGGCCAGGGGTCATCCTCCACCTTTTCCTCAGGTGGTCATAGTGTAGAGGTGATAGGTCAGAGGGGTGCTTCCACCTTGACCTCTAGCTCCCTGTGTGGCTCGAAGGGGTCAAATCAggcctctgctgctgctgtcacagtcaccaccacacccATGCCCACGGCTGCACCACGTAGCAGGAGCCACACCGCTGTTGTGCAAGAGAAGAAATCCTCTGTCACTGAGAAATACACTGAGACCAGTACTATAGCGTAGAAAAACAACCTCACGTTTGCTTGAAAACATACAGTACAGCCAAGTCACTGTGGGTTTAAAAGATATGTTTTCTTTTTAGTCAATGAAACAACAGtcaagggagagacagagggattggTGCTCTCTGCTGGTCTGAAATGATTCATGAATACTCTACCGACTGTTTTATAATGATTTTAGTTTTTACTGGAGCAATGTGCTTTATTACGATTACCAGCGGGTATTTCATCCTTGATATGATGAATTGATAAATCTGTGGCTGTGGTGGATTAATTGTTCAGGTAACAAAATCTTTCTGTatctttgatttagcttttcttTCTGGGATGGTCAATTCTTGATCTATTTCATAGTTGAGTAGGCCAATGTTTCCAATGTTACAGTTGTACAAACGGTACATACAAAAATATTGTGACATAGAAGTGTGGGACCCCTCAAACAGATCCTATTTTTCTATTGTAAATAGTTTACATTTTAAGCCAAATAGTGCCTTGTTTTTGCTGTTTGGCCTCACATGCATTAACTTATCCCATGATAAAAAAAAGTGTGTTATTGATGCCAAGTTAATATCATTTACAGAAAATtgattttaaattgttgcatataTTTTTTTCCGTTCATGCAATATAAAAATAGAGATTATGTAGGATATTTACCATGAGGTTGGCTTATTATGCACTGATATGCATTAAAGTATCACACGGATGTTGCTTTTAATGGTAATGATATTTTTTTGCCAGTTATTTCACATATAATGCTTTGTGGCAATATAAGGGATTTTCCTGCTGTGTGTCTCATTCTGTATCAAAAAGTTTGATCAAATGTTTTGAGAGTAACAATAAAACTTGAGTGATAACATA

Function

NR:

description
desmoglein-2-like

GO: NA

KEGG:

id description
K07597 DSG2; desmoglein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589299.2 True 4519 mRNA 0.48 14 16143163 16151757

Neighbor

gene id symbol gene type direction distance location
LOC110508634 LOC106569165 coding downstream 88817 16029118 ~ 16054346 (-)
LOC110508633 LOC106599720 coding downstream 125213 15934185 ~ 16017950 (-)
LOC110508632 igfbp-3b2 coding downstream 222313 15908442 ~ 15920850 (-)
LOC110508627 LOC106599725 coding downstream 349618 15703333 ~ 15793545 (-)
LOC110508626 LOC106599727 coding downstream 442707 15621664 ~ 15700456 (-)
LOC110508642 NA coding upstream 667529 16819286 ~ 16828277 (-)
LOC110508644 LOC106599691 coding upstream 737775 16889532 ~ 16901564 (-)
LOC110508646 LOC106599672 coding upstream 1102562 17254319 ~ 17260420 (-)
LOC110508647 LOC106599671 coding upstream 1111466 17263223 ~ 17285064 (-)
LOC110508648 LOC106599664 coding upstream 1135199 17286956 ~ 17401108 (-)
G2110091 NA non-coding downstream 76537 16066408 ~ 16066626 (-)
G2110066 NA non-coding downstream 83335 16004327 ~ 16059828 (-)
G2110061 NA non-coding downstream 182300 15960656 ~ 15960863 (-)
G2110058 NA non-coding downstream 183973 15958937 ~ 15959190 (-)
G2110052 NA non-coding downstream 194917 15947835 ~ 15948246 (-)
G2110269 NA non-coding upstream 110036 16261793 ~ 16262111 (-)
G2110360 NA non-coding upstream 191498 16343255 ~ 16343496 (-)
G2110362 NA non-coding upstream 192026 16343783 ~ 16344273 (-)
G2110391 NA non-coding upstream 212387 16364144 ~ 16364344 (-)
G2110396 NA non-coding upstream 216760 16368517 ~ 16369291 (-)
G2109705 NA other downstream 538700 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 588266 15539768 ~ 15554897 (-)
G2105419 LOC104953893 other downstream 4643091 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 5249083 10886198 ~ 10894141 (-)
G2110939 NA other upstream 647633 16799390 ~ 16799869 (-)
G2112905 NA other upstream 2309417 18461174 ~ 18461538 (-)
G2112922 NA other upstream 2347784 18499541 ~ 18499966 (-)
G2113211 NA other upstream 2505796 18657553 ~ 18659728 (-)

Expression


Co-expression Network