LOC110508639 (LOC106599706)


Basic Information

Item Value
gene id LOC110508639
gene name LOC106599706
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16458212 ~ 16541579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965888.1
TGCATGCAAGGGAGGGAGTAGCAGCCTCAGTACCAGGAGGTGATCTCAGATCGGAGCACGGAGTGGATAGGGGAGGCTGCTAGGCTACATGCTGCTGCCGCTGCCACCTTTGTTGTAAGCAGGGAACGTTTGATTTCACCACTACATCCATACTGCAGCAGACATAGCCTACGGATATTTATCACGGATTGCAAGGGGAAATACATTACAACCGGCATACCCATGTACTTTTACGAGGGCAGAGGACTGCTTCTCCTCACGCTCTTGGCCGCTTTGCAGATCGCAACTGAGGGCAGAGGCACCCTTCCTCTGTGCCGGCCGGGGTTCTCTGAAGATGTGTATGTTGCCGTGGTGCCAGAGAGTGCAGAGAAGGGACAGCCCCTTTTCAATGTGAAGTTTGTGAACTGCGGCCGAGGTGGACTGGTGCGTTTCGAGTGCAGTAACCCGTTCGACTTCCGGATAGAGGCTGACGGGGTCGTCTACGCCCTCAGGCCTTTGACCTTGTCCACCCTCCCTACAGTGCCCCTAGTTATCGTAGCCAGGGACGAGACCAATCAGCAGCAATGGCAGACCCAAGTGAGACTGACGCCCCCTGTAGGCCAGGACCAGCAGGCCCAGGACATCCAAGCTCCCCCAGCTCAGTCCCAGGGTCTCCAGGAGATATGGTTCCCATCacggcagacagacagcagctccATCGGCCAGCTCAAACGCATGAAGAGAGACTGGGTCATCCCCCCAATCAACGTTCCCGAGAACTCCAGAGGAGAGTTCCCCCAGGACCTGGTCCGGATCCGGTCGGACAATGACAAGAACCGATCCCTGAGGTACAGTGTGACCGGACCCGGAGCTGACCAGCCACCCACCGGCATCTTCATCATTCACCCCATCTCTGGAGAGCTGTCTGTCATGAAACCCCTGGACAGGGAACACATATCCAACTTCCACCTGAGAGCTCATGCTGTGGATCTGAACGGTAACCAGGTAGAGAGCCCCATCGACATTGTGATCAATGTGATTGACATGAACGACAACCGGCCAGAGTTCATTCATCAGATCTGGAACGGCTCCGTCCCTGAGGGCTCCAAACCAGGGACCTTCGTTATGACGGTAACGTCTGTTGACAAAGACGACCCCAAAACAGCCAATGGGATGCTGCGCTACAAGATCGGATCCCAGAATCCCGAGAGCCCGACATCCAACATGTTCACTATTAACAACAagacaggagacatcattacCGTCGCGGCTGGCCTGGACAGAGAGAAAGTGCCTCAGTACACGTTGATCATCCAGGCCACAGACATGGAGGGCAACCCCATGTACGGCCTGTCCAACACTGCCACGGCCGTTATCAGGGTGACCGACATCAACGACAACCCACCAGAGTTCACTGCCGAGATGTTCTTTGGAGAGGTGCCTGAGAACCGGGTGAATGTCATCGTGGCCAACCTGACGGTGACGGACAAAGACCAGCCCAACACGCTAGCGTGGAAGGCCGTCTACAAGATCACTGGAGGTGACCCCACTGGCAGGTTCTCCGTGCCAACCGACCCCACCACTAACGAGGGCCTGGTAACCGTCGTCAAGCCAATCGATTATGAGATCAGCAGGACGTACATGTTGACGGTGGTAGCGGTGAACGAGGTGTCTCTCGCCCGGGGCATCCACTCCCCTCGCCAGTCCACCGCCACAGTCTCCATCAGGGTCATTGACGTCAACGAGAGCCCCTACTTCGACCCCAACCCCAAACTCATCAAACTGGAGGAGGGGATGTTAGCAGAATCCACACTGACCACCTTCACAGCACAAGACCCTGATAGATTCATGCAGCAAAGCATTAGATACACCAGGCTCTCAGACCCAGCCAACTGGCTGAGAATTGATGCTAACACCGGGCGCATTACAACCATCGCCGTCCTGGACCGCGAGTCGCCCTACGTGAAGGACAACATGTACAGCGCCACCTTCTTGGCCTCTGACAATGGCGTCCCACCAGCGAGCGGTACAGGCACCCTGCAGATCTCCCTGCTGGACATCAACGACAACGCGCCCCACGTCTACCCCCAGGAGACTGAGATGTGCAAGAAGCCCGAGCCTAACGGCATCAACATCACAGCGCTGGACGGAGACCTCAACCCCAACGCCGGACCCTTCGCGTTCGAGCTGGCCAACAGGCCCTCAGATGTCAGAAGAAACTGGACCATCACACGGCTCAGTGGTGATTATGCCTTGTTGAGCCTGAAGATTGGCTTCCTGGAAAGCGGCATCTACGAGATCCCCATCATCATCACTGACTCTGGCAACCTGCCCATGTCCAACACATCCTACCTGCGGGTCAAGGTGTGCCAGTGTGACCACAACGGGGACTGCACCGACCAGCAGCACATCATCGCCGCAGGGCTGGGCACGGGCGCCATCATCGCCATCCTGCTCtgcatcatcatcctcctcaTTCTGGTATTGTTGTTTGTGGTGTGGATGAAGCGTCGTGATAAGGAGCGTCAGGCCAAGCAGCTTCTCATTGACCCGGAGGACGACGTCAGAGACAACATCCTGAAGTACgatgaggagggaggtggagaggaggaccaGgaTTATGACCTGAGCCAGCTTCAGCAGCCCGACACGATAGAGCCGGACACCATCAAGCCCGTGGGGATCCGGCGTATGGACGAGAGGCCGCTGCACCCTGAGCCCCAGTACCCCATAAGGTCAGCAGCCCCGCACCCCGGGGACATCGGAGACTTCATCAACGAGGGACTTAAGGCAGCAGACAACGACCCCACAGCCCCGCCCTACGACTCCCTGCTGGTGTTCGACTATGAAGGCAGTGGCTCCACAGCCGGCTCCCTAAGCTCTCTCAACTCCTCCAGCAGCGGAGGGGACCAGGACTACGATTACCTCAACGATTGGGGCCCTCGCTTCAGAAAACTCGCAGACATGTACGGAGGGAGCGACGACTAGGACACAGGATGTGCAAGACGTAAAAAAAACAAGACGACAAAGAATGGTGAACCCAGGAAAagagaaaatatattttgttttcctCTCAATGGATGTGGACAGCTTCCGATTACCGATATTCCCCTGAAAGAGTGGTGACAGGAACAATGACAGAAAAGTTCAAAAAAATGTAAACTTAATTCAGAAATATTTTCAAAAAACAACCAATCTAGGCTTATTGTTGTAGTCTACGCATACATATGCTTGTTGAAGGCTTAGGCATACGCTGAAGTGCAGTCCAGTtttggagaaggggagggaacaTTGGTGAACTGTCACTGTTTGGATCGTTGATATTGAGCGCGCTCAGTTACACTTGAATTTCACAGTACAGAAGCACTGGGATATAATGTGCCTTTTTGTACATTTTTGGGATCTGAATGATTAGTTTTATGTTCAAGGCTTTAATGGTACTGACTTTTGGAGTGATTTCAAAACATAAGAAAGTATGTTAAACTATGGTATGCTTCTACATGCTTTTTTTGGTTACACAATACAGCTGTTTGTTGAACAAGGATTATTTAAGTGAATTACAAAGATGAATAACTTAGATGATGAAGGATCCTTATGAGCTTGGATGGGGAGAATCAACCGAGAACAGCACTGTACAGTACTCTAGAAATGTAGAATGTTTTCACAAAAAAATTAAACTTATTCAGCTGGTTGCAAATAAAGGGTAAGTAATACTTTTGTAGCAGAATTTGTTTGTTTTCCTTTATTTCTGAAGTGGTGTAGTATTTTATAAAAACAACAACTGTTTATTTTTGTTCTAATCCGTGTACACTTCATTTGCCTTAGTCATCATCTGGTACGTTCAACTTTTACTTCACGGTAAAGAAAATGtgtgtacatatattttttttcttcttctgtagtCTATGAAGAAGTGCAAAACGTTCTGAACTTGTAAATGTATCATTTGGACTACAAATTAATGTTTTTGCATGTTTTTATCTTTTCACGACAACAAAAATTATGAAAAAGGTTATTTCcaaaatgtatttacaaagcAAAAAAATTAAAACCGTGTGACATTAAATGTGTAGAAGTGAAGTCTTTTGTATAAAATGAAGAAAAacagcaaaaaataataataaaaaaattgcAATCTTGTCAGCACAACTGTTTGAATTTGTACCAAAAAGGGGGTGGGTGGGATGTTGTGGCACCATTGGCACTAATTACTGAATCAGCTTTAAGACTGGAAAAGGTTTTTGTCTGAAGCTTTGTGGATAATCGTATGTACTGGAAAACAAATTATACATCTCTGACCCACCAACCATCCGAATAAAATGCCAATTTTTGAGCTAA

Function

NR:

description
cadherin-2-like

GO: NA

KEGG:

id description
K06736 CDH2, CDHN, CD325; cadherin 2, type 1, N-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965888.1 True 4317 mRNA 0.50 16 16458212 16541579

Neighbor

gene id symbol gene type direction distance location
LOC110508172 NA coding upstream 161933 16295344 ~ 16296279 (+)
LOC110508638 LOC106599708 coding upstream 265085 16170026 ~ 16193127 (+)
LOC110508636 tbb2a coding upstream 318460 16133508 ~ 16139752 (+)
LOC110508635 LOC106599714 coding upstream 325649 16073550 ~ 16132563 (+)
LOC110508631 igfbp-1b2 coding upstream 554551 15900655 ~ 15903661 (+)
LOC110508278 LOC106599701 coding downstream 267892 16809471 ~ 16813125 (+)
LOC110508640 LOC106599692 coding downstream 282680 16824259 ~ 16839283 (+)
ss18 ss18 coding downstream 360312 16901891 ~ 16921869 (+)
LOC110508645 LOC106599680 coding downstream 468946 17010525 ~ 17154942 (+)
LOC110508175 LOC106599673 coding downstream 655155 17196734 ~ 17236598 (+)
G2110502 NA non-coding upstream 12589 16445264 ~ 16445623 (+)
G2110495 NA non-coding upstream 16855 16441140 ~ 16441357 (+)
G2110432 NA non-coding upstream 55491 16402483 ~ 16402721 (+)
G2110278 NA non-coding upstream 187599 16270399 ~ 16270613 (+)
G2110101 LOC106599711 non-coding upstream 313003 16143168 ~ 16145209 (+)
G2110569 NA non-coding downstream 15842 16557421 ~ 16557625 (+)
G2110575 NA non-coding downstream 21826 16563405 ~ 16563829 (+)
G2110881 NA non-coding downstream 216113 16757692 ~ 16757929 (+)
G2110890 NA non-coding downstream 224616 16766195 ~ 16766395 (+)
G2110892 NA non-coding downstream 225415 16766994 ~ 16767283 (+)
G2110507 LOC107717027 other upstream 9710 16448112 ~ 16448502 (+)
G2109955 LOC106599720 other upstream 509351 15948308 ~ 15948861 (+)
G2109948 NA other upstream 519355 15938511 ~ 15938857 (+)
G2107033 NA other upstream 2544985 13911427 ~ 13913227 (+)
G2106557 NA other upstream 3314617 13143313 ~ 13143595 (+)
G2111044 NA other downstream 412205 16953784 ~ 16958852 (+)
G2111300 NA other downstream 869565 17411144 ~ 17416232 (+)
G2111457 NA other downstream 1166677 17708256 ~ 17708629 (+)
G2111491 NA other downstream 1213358 17754937 ~ 17755581 (+)

Expression


Co-expression Network