LOC110508278 (LOC106599701)


Basic Information

Item Value
gene id LOC110508278
gene name LOC106599701
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16809471 ~ 16813125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966542.1
TAATCATTTCATTTATGAATTCATTATTATTTTACCAGGAGTTGCCTGTCAGCGCGTAACCAGCATCCCATCATGGTGGCATTCAAAGGAATCTGGACCAAGGACTTCTGGAGAGCTGTGTCAGCCGAGTACCTAGCTTCCCTGATCTTCGTCCTCCTCAGCCTGGGCTCCACCATCAACTGGGCATCTGAGTCGGACAACCCTCCCCCCGCAGACCTGGTCCTCATCTCGCTGTGCTTTGGCCTGGCCATCGCCACCATGGTGCAATGCTTCGGACACATCAGTGGCAGTCACGTCAACCCGGCGGTCACAGCAGCCATGGTGGTGACCAGGAAGCTGAGCCTGGCCAAGGGTGTCTTCTACCTGGCTGCCCAGTGCCTGGGGATCACTGGGGCAGGGCTCCTCTACCTGGTGACACCAGTGTCTGTCAGAGGGGGCCTTGGAGTGACTCTGGTGAACCCTAAGCTCAACATGGGCCAAGCCCTGTTGGTGGAGCTCCTGATCACCTTCGAGCTGGTCTTCACCGTGTTCGCCACCTGCGACCCCAAACGCTCTGACCTTAACGACTTGGTTGGCCTCGCCATTGGAGTCGCTGTAACCGTCGGCCATCTGTTCGCGATCCCATACACAGGAGCCAGTATGAACCCCGCTCGCTCCTTTGGGCCTGCAGTCGCCACCATGAATTTTGAAAACCACTGGGTGTACTGGGTTGGTCCAATCCTGGGTGGCATCATGGCGGCTGCCCTCTATGAATACCTGTTCTGCCCGGACCCTGAGCTTGAGAGGATGCTCCGGGACGTCTTCCAGAAGGTTCCAGCATCGAGGAAGTACAGGGAGGTGAAGGGCAACGGCGTGTACCAGGGGGAACCAGATGACCTGATCACCAAGCCACCGTCCATCCACCACATTGACCTGGAGAAGGATATTTTCCGGGACTTGACAGGCGAGGTGCTGTCATTCGTATGACTACCACGGGCACGGAAGAGGGAGACCAACCTGTAAAGCAGGGggagatccagagagagacactTTCAGTCCTCCACCACTGCAGCCCCCTACTCCAAGCCACCATGCCTTAACCCACACAACTCACTTCTCAGGCAGAATATGATTGATGCATGTCCTCGCAATGTAgatgtgtttgtgtacatggaggTGAGCCTTCCTCAACATTTGTGAGGTAACTGGATAATATAAAACTTTGCACTCTACTCCAACCAATTACCCATATCATATGAAATCTATTGATCTCTGCAATTTTGTCCCATCATCTTCTGGCCCAGATGTGTTTTCTTGTGGCACTC
>TU2414093
CTGAGCTTGAGAGGATGCTCCGGGACGTCTTCCAGAAGGTTCCAGCATCGAGGAAGTACAGGGAGGTGAAGGGCAACGGCGTGTACCAGGGGGAACCAGATGACCTGATCACCAAGCCACCGTCCATCCACCACATTGACCTGGAGAAGGATATTTTCCGGGACTTGACAGGCGAGGTGCTGTCATTCGTATGACTACCACGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966542.1 False 1304 mRNA 0.54 4 16809471 16813125
TU2414093 True 203 TUCP 0.56 1 16812594 16812796

Neighbor

gene id symbol gene type direction distance location
LOC110508639 LOC106599706 coding upstream 267892 16458212 ~ 16541579 (+)
LOC110508172 NA coding upstream 513192 16295344 ~ 16296279 (+)
LOC110508638 LOC106599708 coding upstream 616344 16170026 ~ 16193127 (+)
LOC110508636 tbb2a coding upstream 669719 16133508 ~ 16139752 (+)
LOC110508635 LOC106599714 coding upstream 676908 16073550 ~ 16132563 (+)
LOC110508640 LOC106599692 coding downstream 11134 16824259 ~ 16839283 (+)
ss18 ss18 coding downstream 88766 16901891 ~ 16921869 (+)
LOC110508645 LOC106599680 coding downstream 197400 17010525 ~ 17154942 (+)
LOC110508175 LOC106599673 coding downstream 383609 17196734 ~ 17236598 (+)
LOC110508649 LOC106599662 coding downstream 584272 17397397 ~ 17410663 (+)
G2110940 NA non-coding upstream 7990 16801279 ~ 16801481 (+)
G2110938 NA non-coding upstream 9403 16799420 ~ 16800068 (+)
G2110927 NA non-coding upstream 16862 16792388 ~ 16792609 (+)
G2110892 NA non-coding upstream 42188 16766994 ~ 16767283 (+)
G2110890 NA non-coding upstream 43076 16766195 ~ 16766395 (+)
G2110968 NA non-coding downstream 22710 16835835 ~ 16836586 (+)
G2111002 NA non-coding downstream 74415 16887540 ~ 16889267 (+)
G2110998 NA non-coding downstream 110163 16923288 ~ 16925687 (+)
G2111155 NA non-coding downstream 364293 17177418 ~ 17177657 (+)
G2111203 NA non-coding downstream 448674 17261799 ~ 17265127 (+)
G2110507 LOC107717027 other upstream 360969 16448112 ~ 16448502 (+)
G2109955 LOC106599720 other upstream 860610 15948308 ~ 15948861 (+)
G2109948 NA other upstream 870614 15938511 ~ 15938857 (+)
G2107033 NA other upstream 2896244 13911427 ~ 13913227 (+)
G2106557 NA other upstream 3665876 13143313 ~ 13143595 (+)
G2111044 NA other downstream 140659 16953784 ~ 16958852 (+)
G2111300 NA other downstream 598019 17411144 ~ 17416232 (+)
G2111457 NA other downstream 895131 17708256 ~ 17708629 (+)
G2111491 NA other downstream 941812 17754937 ~ 17755581 (+)
G2112127 NA other downstream 1090073 17903198 ~ 17903924 (+)

Expression


Co-expression Network