LOC110508642


Basic Information

Item Value
gene id LOC110508642
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16819286 ~ 16828277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471338.2
AATCCACTCATTTTAAAAAtcagtatttaaaaaataatttaattaaAAACAACCACAACTAGCCTTAAAACATCCATGTTTTTACTTCTCAGTTTTGGCAGTGTGGGTTTCACACCTAGATACCCAATTAGCAATTAAGCCTGCCTTTGAGTGCAGGCCTAGACTGTGGTGTGTGATCCTGCCCTGATTTGCATGCAGTTCGTTTGTGCACAGGCTGATAAGCGCAGGCAGCCGTACATAGTTTTAAAATTCAACTCCAGAATCCCTCTCGCAGAAGGCAGAGGGGCCCGCGGGgcgaacagagagggagaaatcaCACGGCTGCTCTTCAAAAGGGAAACCTGTGTACAGCAGCCGGCAAAGTGCGTGGGATCATACTCAGAATGCAGGTTGACTACTCCTACTTTCAAACAGCAGGAGAACACTTCAACTCTTACAGTTAACATCTAAACGGCAcagaccaggacacacaggtgacagagaatcagacagagagggggaaagaaagtgatggagagaaagagggagagaagaagagtgtgTCGCATTCCTTCCTGTTCCTGTACCACCCTCCAACCCCAGAGCTGCAGACTCAAGGCGGTTTCGAGAATCAAACAATTTCACGCAGCTACTGGAGGAGGAAATGAACTGAGCCCAGAGCAATAATGCAATTATACAAATGTTATTACAGACTCGCCTGCTACTGTCCTACTTTAATTCAAATTTGGGAACTCCAGGCAGCGCTGGTGGCAGAGACCTTCCTGAATAAATCAACATTAGCTTACTTCTAAATTATTAAGGAAGTGGGAGACTTTCTTGTTTATAGTATGAATTATGAAACAAGTGTTTTACGCTGTTTTTCTTCATGAATCCCCAAATATTAATTGCTAATGATCTTTAAGGTGTGTGTTTTATCTCTGTGCCCCCCTAAGTTGTATCGGCTGCTGAGAGGCATTTTGCATCAGAAGCTTTAAGTTTTGAAGATTCTACATACAGTAAATGTGAGGAATGTTAGATTAGGAAATTAATTAAAGATAATGCCTGAGATAATGCCTTTCCTTCTTGTATAATATGCATGATGTGCTTTATTGGTTCTGTATAGCACAAATAAACCTCTTTCAGTTTGGTGAACTGTAGGACAAATATGTTTTggtgcattttcacaaatgtgtTAAATTTTTACGCAATTTTTCGGACATTGTTGTTGATTGTTATTTAACAATGCCTATCAGCCTTATAGACAAATAACGTTGATAAAAGCCTTGTCCAGGCCACCCTTGCCATTTCAAATAGGCATCAAtatgaaataaattaaaatacattttgccTA
>TU2414118
GTGTGATCCTGCCCTGATTTGCATGCAGTTCGTTTGTGCACAGGCTGATAAGCGCAGGCAGCCGTACATAGTTTTAAAATTCAACTCCAGAATCCCTCTCGCAGAAGGCAGAGGGGCCCGCGGGgcgaacagagagggagaaatcaCACGGCTGCTCTTCAAAAGGGAAACCTGTGTACAGCAGCCGGCAAAGTGCGTGGGATCATACTCAGAATGCAGGTTGACTACTCCTACTTTCAAACAGCAGGAGAACACTTCAACTCTTACAGTTAACATCTAAACGGCAcagaccaggacacacaggtgacagagaatcagacagagagggggaaagaaagtgatggagagaaagagggagagaagaagagtgtgTCGCATTCCTTCCTGTTCCTGTACCACCCTCCAACCCCAGAGCTGCAGACTCAAGGCGGTTTCGAGAATCAAACAATTTCACGCAGCTACTGGAGGAGGAAATGAACTGAGCCCAGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471338.2 False 1330 mRNA 0.40 3 16819286 16828277
TU2414118 True 492 lncRNA 0.51 3 16819954 16828107

Neighbor

gene id symbol gene type direction distance location
LOC110508637 LOC106599711 coding downstream 667529 16143163 ~ 16151757 (-)
LOC110508634 LOC106569165 coding downstream 764940 16029118 ~ 16054346 (-)
LOC110508633 LOC106599720 coding downstream 801336 15934185 ~ 16017950 (-)
LOC110508632 igfbp-3b2 coding downstream 898436 15908442 ~ 15920850 (-)
LOC110508627 LOC106599725 coding downstream 1025741 15703333 ~ 15793545 (-)
LOC110508644 LOC106599691 coding upstream 61255 16889532 ~ 16901564 (-)
LOC110508646 LOC106599672 coding upstream 426042 17254319 ~ 17260420 (-)
LOC110508647 LOC106599671 coding upstream 434946 17263223 ~ 17285064 (-)
LOC110508648 LOC106599664 coding upstream 458679 17286956 ~ 17401108 (-)
LOC100653470 LOC106599250 coding upstream 737475 17565752 ~ 17622150 (-)
G2110948 NA non-coding downstream 7929 16811139 ~ 16811357 (-)
G2110941 NA non-coding downstream 17813 16801271 ~ 16801473 (-)
G2110922 NA non-coding downstream 32569 16786409 ~ 16786717 (-)
G2110891 NA non-coding downstream 52804 16766229 ~ 16766482 (-)
G2110871 NA non-coding downstream 67001 16752078 ~ 16752285 (-)
G2110980 NA non-coding upstream 7559 16835836 ~ 16836853 (-)
G2111501 NA non-coding upstream 11736 16840013 ~ 16840223 (-)
G2111499 NA non-coding upstream 66662 16894939 ~ 16925687 (-)
G2111565 NA non-coding upstream 110752 16939029 ~ 16939257 (-)
G2111573 NA non-coding upstream 130070 16958347 ~ 16963196 (-)
G2110939 NA other downstream 19417 16799390 ~ 16799869 (-)
G2109705 NA other downstream 1214823 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 1264389 15539768 ~ 15554897 (-)
G2105419 LOC104953893 other downstream 5319214 11499126 ~ 11500072 (-)
G2112905 NA other upstream 1632897 18461174 ~ 18461538 (-)
G2112922 NA other upstream 1671264 18499541 ~ 18499966 (-)
G2113211 NA other upstream 1829276 18657553 ~ 18659728 (-)
G2113287 NA other upstream 1913641 18741918 ~ 18742284 (-)

Expression


Co-expression Network