LOC110508644 (LOC106599691)


Basic Information

Item Value
gene id LOC110508644
gene name LOC106599691
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16889532 ~ 16901564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589320.2
GGAAAATAGTATCCCCCGGAAAGGGTCCAAACAGCGCTGAAAACGTCTGTATTAAACCCTTATTATAGTTCCGGAACCACTTATGATAACAATGGAATGCTGTTGAGTTTATAAAGAGTAAAATAAAATGTTGCAGAGGCATTTGTGAATTTCTGAAAATTTTCTTGGTGAAATGCTCAAAATTGAAAGAGTTCAAGCGCATGCGCCCTGTGATTACTCTCACTCAAAACTAACTGGCAAACATTCGCTAGCGGAGTAGCTAGCTACACGTTTTAAACATTTCAGTACATCTGTTTCGAGAAACACAATGGCAGCAAGATATGACAGGGCGATCACTGTGTTTTCTCCCGACGGTCACCTTTTTCAGGTGGAATATGCACAAGAGGCTGTGAAGAAAGGCTCCACTGCTGTGGGCATCCGGGGCAAAGACATTGTTGTCCTTGGAGTTGAGAAGAAGTCTGTCGCCAAACTACAGGAGGAAAGAACAGTCCGCAAGATCTGCGCCCTAGACGAACATGTTTGCATGGCATTCGCAGGTCTGACAGCAGATGCCCGCATTGTGATCAACAGAGCTCGGGTGGAGTGCCAGAGTCACAGGCTCACAGTGGAGGACCCAGTCACCGTTGAGTACATCACACGGCACATCGCCACCCTGAAACAGCGTTACACTCAGAGTAATGGACGAAGACCGTTTGGCATCTCGGCGTTGATCGTGGGTTTTGACTACGATGGGACCCCCAGGCTTTATCAGACTGACCCCTCAGGAACATACCATGCATGGAAGGCAAATGCAATTGGCCGCAGTGCTAAGACAGTGAGGGAATTCCTGGAGAAGAACTACACAGATGAAGCCATCGCCACTGACAACGAGGCGATTAAGCTGGCAATCAAAGCCTTGCTTGAGGTGGTTCAGTCTGGTGGGAAGAACATTGATCTCGCTGTGATCAGAAGAAACCAGCCACTGAAGTTATTGGAGTCCAAAGAAATTGAGACCCTGGTGGCTGAGatcgagaaagagaaagaagatgAGGCAGAGAAGAAAAAACAGAAGAAATCTACTTGAAGTCGTTACTCAACCACTGGCTTTCATTTAGCCCTTGGGTAAAGGCAGTGTATTTGGTCGGTAAATATAGAAAAGTGTCAAGGTTTATAGGCCCAAATATAGCTTTCATGTCACACACTAAGGTTCGTATGTTGAATTTTCACATAAATATCCCACCGGCATTGCCATCAATGCATGGTTTATGTGGAAGTTGAGCTGTGTggatctcaagttaggattcagAACTTGGAGATCTCACCTCTGCCCTCTTTTAAGAACAGTATGTTATTTATTTTAAGTGAATTTAGACCGACATACTTAATAAAGTCAACTTGTTTATGTA

Function

NR:

description
proteasome subunit alpha type-7

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02731 PSMA7; 20S proteasome subunit alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589320.2 True 1385 mRNA 0.45 7 16889532 16901564

Neighbor

gene id symbol gene type direction distance location
LOC110508642 NA coding downstream 61255 16819286 ~ 16828277 (-)
LOC110508637 LOC106599711 coding downstream 737775 16143163 ~ 16151757 (-)
LOC110508634 LOC106569165 coding downstream 835186 16029118 ~ 16054346 (-)
LOC110508633 LOC106599720 coding downstream 871582 15934185 ~ 16017950 (-)
LOC110508632 igfbp-3b2 coding downstream 968682 15908442 ~ 15920850 (-)
LOC110508646 LOC106599672 coding upstream 352755 17254319 ~ 17260420 (-)
LOC110508647 LOC106599671 coding upstream 361659 17263223 ~ 17285064 (-)
LOC110508648 LOC106599664 coding upstream 385392 17286956 ~ 17401108 (-)
LOC100653470 LOC106599250 coding upstream 664188 17565752 ~ 17622150 (-)
LOC110508653 LOC106599252 coding upstream 727433 17628997 ~ 17767340 (-)
G2111501 NA non-coding downstream 49309 16840013 ~ 16840223 (-)
G2110980 NA non-coding downstream 52679 16835836 ~ 16836853 (-)
G2110948 NA non-coding downstream 78175 16811139 ~ 16811357 (-)
G2110941 NA non-coding downstream 88059 16801271 ~ 16801473 (-)
G2111565 NA non-coding upstream 37465 16939029 ~ 16939257 (-)
G2111573 NA non-coding upstream 56783 16958347 ~ 16963196 (-)
G2111655 NA non-coding upstream 251581 17153145 ~ 17154914 (-)
G2111700 NA non-coding upstream 277774 17179338 ~ 17179540 (-)
G2111742 NA non-coding upstream 332006 17233570 ~ 17253437 (-)
G2110939 NA other downstream 89663 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 1178603 15703333 ~ 15793545 (-)
G2109705 NA other downstream 1285069 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 1334635 15539768 ~ 15554897 (-)
G2105419 LOC104953893 other downstream 5389460 11499126 ~ 11500072 (-)
G2112905 NA other upstream 1559610 18461174 ~ 18461538 (-)
G2112922 NA other upstream 1597977 18499541 ~ 18499966 (-)
G2113211 NA other upstream 1755989 18657553 ~ 18659728 (-)
G2113287 NA other upstream 1840354 18741918 ~ 18742284 (-)

Expression


Co-expression Network