LOC110508646 (LOC106599672)


Basic Information

Item Value
gene id LOC110508646
gene name LOC106599672
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17254319 ~ 17260420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589323.2
tatgcatattcttgcttcaggtcctgagctacaggcagttagatttgggtatgtcattttaggtgaaaattgacaaaaaaggggcggatccttattAAGTTTGGTCGAAAACTCTGTGCTATGCCAAACAGTAAACTACTTGTAACTACGAATGGAGCATCACATTAGCCCGTTACAGTTTGTTAGCTAGCCTACAGATGCTTTACAGTTAAAAGTTAAATACACCTTTGTCGCACTAAGCCAATAGTGATGGGAATTTCCGTTATATTATTTGATGTAGAAATACCGGCATGATATACTGTCAGATGAGCTATCTGGTAGTTGGATCAAATGCTACATAGTAGCAGGCCAACTGTACGTGTGCGTGACAACATTATTTCGCAGCAACAATACCCCTCCATTATGACGCAATTATTGAGTGATCATGTTATCGCTAGTAGCCTTCATTACTGCTCTCAGCGCATTGGACAATTATTGGAGTCCATCAATAATGCATTGGACGAGCGCGTTCATTACATTTAGTCAGTAAATAAATATTTGAACGACTTTACTCTTGTGATTTGGAATTTCGTGCGTCTACGCTTGTGTTCATAAGCAGCAAGATGCCTTATCCACATAGAGTGGTGAATATTCCCACGGGATTCAAGGACTTGCTTGAGGGAGTGAGCAAGGCTGTGATGAAGTATCAACCGGAGAGTATCCCCGCCTTCGCAGCGGGCTTCTTCAATGCGCTTCTTATCTTCAGAGACGAGAAGCCAGGCATGCCTATCCATGAGCTTATTAAAGAATTCAGGGCTACAAAAGGCTCTCATTTCTACAGGAAGAAGAATAAAGCTGTACAACCACAAGTACAGCCGCAGGTCACTGTCCAAGGTCCTGAAAGGTCCCCCCATCCCAAGCCAATCCCGGAGTGGGAGGCAGGCCCGTTGCTAATGGAAGCTAGATGTGAGGATGTCAGGGAGCCTTTCTCCTTCATCTCTAGTGACCAGCCCTGCAGCAGCCGAGACATCCAGGCTATGGATGCAGTGGCAGGAGCTTCTACTGACGGTGGCCAGAACGAGTTTGGCCTGCAGGTCTCTGCCACCACCATCACACTGTCCCCAGGGCCCATCCCAGCAGACGTTGCCCAGGGCCTGGCCCTGTACCGACGCAAGATTGACCTAGAGTCATCCCCCCGGGACTCTCCTCCACTCGGGGCTTCCGCCAACAACTCCTGTGCGCGTGTCCGTTCGGCCCTCTTCGAGCGGGTCTCCATCAGTGAGATCAGCCAGGAGTTGGATGCGGTGCTGATCCGGACTGGCGTGCTCCCATCAGAGTCCCTGATCATCGTGCAGACAGAGCATGTACCCAAGATGATTGTGTTCCAGGCTCATCCCCTATTGGCTGAGAACGCAGCAGTGGCTCCGCCTCCGTGTGACGCCCCTGTCAGGTATAAGTGCAGCTGTGCCTCAATGGTGGGCGCCATCGAAGACGTGGTGGCACCATTGGAGATGGCCGGTGCATCTCAGCCCAGCTATCCCATCTGTGAGAGAGCAGGTCCCGTGGTGGAGAGACCAGCTGCTATGGTCGCTGAGCCTGAGGAGTCTCCAGCCCTTGGAGACAAGGTTGTACCCCTTGAGGTCCACTCTGCACCAGTCGAACCCCAGGAGATGACACCCTCAAGGCCCTCCATCCCAGTTGGAACACTGGAGCTCCCTGTTTCAGCCCCTGCTGTGTCTGACTCCCCTGCTGTGTCTGACTCCCCTGCTATGGCTGTCCAAGAGGTGCAGATTAGTTTGACCGATCGTCCTCTCTCAGTCATCCTACACTCCCTCTCTGGTGCAACTTCACCATCCGAGACAGCAGAGGATGTGATGCTGGTTCCTATGGTAGTGTCCCCTCCTGAATCAGTCAAAAGGGTGGTGAGAGAGTCCTCTGATCTTCTGTGTCCTCTTCCTGCAGCGACATTGGAGACTGAGTCTGTTAGTGTGATTTGTCCCCCTCCTTCTCCAGTGACTGTGCAGATCCAGTCTTCCATTCTGGCTTCTCCCCTTACTGCTGCAACCGTGGAGACAGAATCCTCCAATCGGATTTGTCCTTCTTCTGTGGTCAGCGTGGAGACTGAATTGGCCGATATGCTATCTCCTTCTGCTGCAGAGACAGCGGAGGCCGAATGTTCTGTTTTGACCTGCCCCCATACTGCAGTGACCGACGACTTTGTGGCCCCTGTTTCTGTGTACCTTCCTGTTGTGGCACCAGAAGAGACCGGTGTCCCCAGTGTGCAGCTCCCAGCTCCCGCGCCTGCCTTGACAGAGGAAACTCAGTGCCAGTCTGCTTCACCATGCCTACCCACCCTCACGGCCGCAGGAGAGTCCAGAACCCCCTTCTTGGTCTACCTCCCACTGCCTGCTCCAGAGCTGGCTAAGACCCCTGGTCTGTTGTGCCAACTGGGCCTGGGACCAGAGGAAGCCAAGAGCTTCCCTTTCCTGTGTCTCCCTATTTCTGACATCCCCAGGACCCCAAGTCTTGTGACTGCCAGTCTGGCTCCAGCTCAGACTGCGGCTGTGGCTCCTGCTGCTGCTCCGGATTTACCAAGGACCAACCTCCCTGGAGTGACAGATATCCCCAGGACCCTGAGTTATGTGGCGGCTGGAGCTCAGGAGCTACCACGGCTCCAGAGCTATGCGGCTAACACCGCTGAAGTCCAGGAGCCACTGAGGACCCTCAGCTATCTGGCTAACACCCCTGGAGTTCAGGAAATACCACACAACCCCAGCTATCTGAAAAACTCAGCTGTCTTCCAAGATATGTGCTTTATGTGCCCCTCCGTTACCGCCTCCAATCTGTCCAGGAACAATAGCTTTGTGCACTCTCCGGCTGCCATGGCTCCACAGCAGCTGATTAGGGGCCCGTGTATGATGTCTCTGTACCCCCAGGGAGGGCCTGTGATGGGCCACTGTACCCACTCCCCAGGACAGTGTCCTGCGTCTTTGCAGCAGCAGGCTGGCATGGCTCCGCTCAACCACGGACAGCAGACCAACACCAACTTCATGCCCATTTGTTCTCAAGGGCCAAgCCTGTGTAGCTGCCTCGGCAGAACTGGCAGTCACTGGCGCCTCTGTCACCTGACGCGACCCGAGTCCCAGGGCAGGGTGGGCGGCATGATCTGCCCCTACCAGAACTCCCAGACCATGATGCACTGCAACAGCCTGGATCACATGGCCAACATCCCCATGTACCAGGACTGTGGCCACTACTCTAGCAGCTGCCACCTGCTGCCACCGTGCTCCCAGTCGTCCCACAGCAGCCTGCACACCCACCACGTGGCCGAGCCCCGTTGCTCTGCTCACAACCTGGGCACCTCCTTCGTCCAGCCCCAGAACTGCTCCTCCGACCCCCTCTTCCACTACCCCCAGCAGTACCACCTGGTGGCCACCCCCTCCCAGGAGAGGCAGCAGGCCCTGTGCCCTCTCCAGTGCCCACTGCTGCAGCAGCGCCACAGCTCCCTGCTCTTCTGTGGGCACCAGGGGGAGCTGAGCAGGCTGGGCTCCTCCAGCTGTGTCCCTGCCACCAaccagagacagaaccagggagGGGTGGAGCAGAAGAACAACAACCCCAGCTGCGTATCGCTTCATAACAAAAGATTAGACACGAGCGCAAACAACAATCAAGGCTGCGTCATGAACTGCAATCCCCAGGGCAACTAATCCTGTCTTCACATGAGAAGGACCTTATTTTTGCAGTTGCCAATGTCTCTTTTGCATTCTTTTAAACTGATAATGAGGAATAAATATACTTACATTGCATGAATTTCGATAGTGCACCGACCCTCAATCAATCACTACAAAAACATACAACTTAAGGTAATTGCAGCTATGTAAAGGCAGTAGATGGAGGGTAAACTTCCACATTGATACAAAAGTTTGACAAAGATTCGGTATTGGGCTGTTTAAAGATAGAATCCTTAGTCGCTATATCAATTTTTGGACTCTAACTTATAAATCCCTCtcgagcttagttcaactgtcgtaccccatcagaaaccaaaatataagcttgttttactccaatgtttgtaaacaatgtaaacaaacactttatACCCTCCAAACATGgttcaaactataattttgatatcactGATGGTCAGTCCTTACGTCAatggctctgtctatgaatttgagagaggcatggagaaatgtaaccaatctctcaactttttaccaaaacagtggcgaGGTGTCACTTTGTTCTATTTTtaaactaaggattctagctttaggACCACTGTTTCTATGGAATGAATAGAACCATTGCAACACTCACAAAATGAGTCATAATGTCACATCCATGTTGCATAGTAACAGATTCCATGGGTGGAAGTGGGAGTAAAACAAGAAGAAATAGAAAATCACCATCAAACTTTAAAATCTGACTTAGACAGTCTGGACTGACTGAGCCTAAGGCCATGTCATCCTTCTAACATCTGCTCAGTTACTCGTCAGAACTCAAAATGACCTGTTCGCCAGGTTGTTAGGACATAGATCCAAATGTTGCATGGGGTAAGGAATGCATTAAATAGAAAAGCTCAATTAGCTTGCAGGTAATGTTAGCTATTATACATGTTGTTTGTTTCCCTGCTATTGAAGCTCATCACAACATTATTTGACTATCTAATGAGAAGATGTTAGAGCAACTACACCATATTATTTAAAAAGTACAACCATACGGTATACAGAAAGTGATACATTGTTACTTTTGGCTTTGTTGTGGTGGATGAGCTAAACAATGGAACATTGCCCGTGTCTGTCGATtgccaccaacaacaacaagcaaAACTCTCTATGCAAGTGCCCACTACCAGTTACCAACAACAAGCAATACTATCATTACCAGTGCCTACTGCCAGTTCAATGAAAAAGGATTTCAACTCTACAGTCTGACCTTCAACTCTCACTGAGCCAAAGTACAGTCCACTCAATCCAACTGGGACAACAGCTGGTTCAGAACCAAAGGAGAGAGTCAAATCTCCCCAAACATGACaacagagaaaataaataaagaggTCAATCGAACTCAACCTAAAAAATGGAATCACCAAGGAAATGTGTGGGGTAAAGATCCcaaacatattcttattcattcctttacacttgtgtgttttaaggtagttgttgtgaaactgttagattacttgttagatattactgcacggttggaactagaag
>TU2414937
TGCTTTATGTGCCCCTCCGTTACCGCCTCCAATCTGTCCAGGAACAATAGCTTTGTGCACTCTCCGGCTGCCATGGCTCCACAGCAGCTGATTAGGGGCCCGTGTATGATGTCTCTGTACCCCCAGGGAGGGCCTGTGATGGGCCACTGTACCCACTCCCCAGGACAGTGTCCTGCGTCTTTGCAGCAGCAGGCTGGCATGGCTCCGCTCAACCACGGACAGCAGACCAACACCAACTTCATGCCCATTTGTTCTCAAGGGCCAAgCCTGTGTAGCTGCCTCGGCAGAACTGGCAGTCACTGGCGCCTCTGTCACCTGACGCGACCCGAGTCCCAGGGCAGGGTGGGCGGCATGATCTGCCCCTACCAGAACTCCCAGACCATGATGCACTGCAACAGCCTGGATCACATGGCCAACATCCCCATGTACCAGGACTGTGGCCACTACTCTAGCAGCTGCCACCTGCTGCCACCGTGCTCCCAGTCGTCCCACAGCAGCCTGCACACCCACCACGTGGCCGAGCCCCGTTGCTCTGCTCACAACCTGGGCACCTCCTTCGTCCAGCCCCAGAACTGCTCCTCCGACCCCCTCTTCCACTACCCCCAGCAGTACCACCTGGTGGCCACCCCCTCCCAGGAGAGGCAGCAGGCCCTGTGCCCTCTCCAGTGCCCACTGCTGCAGCAGCGCCACAGCTCCCTGCTCTTCTGTGGGCACCAGGGGGAGCTGAGCAGGCTGGGCTCCTCC

Function

NR:

description
BCL-6 corepressor-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589323.2 False 5210 mRNA 0.50 5 17254319 17260420
TU2414937 True 744 TUCP 0.63 2 17256208 17257395

Neighbor

gene id symbol gene type direction distance location
LOC110508644 LOC106599691 coding downstream 352755 16889532 ~ 16901564 (-)
LOC110508642 NA coding downstream 426042 16819286 ~ 16828277 (-)
LOC110508637 LOC106599711 coding downstream 1102562 16143163 ~ 16151757 (-)
LOC110508634 LOC106569165 coding downstream 1199973 16029118 ~ 16054346 (-)
LOC110508633 LOC106599720 coding downstream 1236369 15934185 ~ 16017950 (-)
LOC110508647 LOC106599671 coding upstream 2803 17263223 ~ 17285064 (-)
LOC110508648 LOC106599664 coding upstream 26536 17286956 ~ 17401108 (-)
LOC100653470 LOC106599250 coding upstream 305332 17565752 ~ 17622150 (-)
LOC110508653 LOC106599252 coding upstream 368577 17628997 ~ 17767340 (-)
LOC110508654 LOC106599254 coding upstream 726642 17987062 ~ 18074154 (-)
G2111742 NA non-coding downstream 882 17233570 ~ 17253437 (-)
G2111700 NA non-coding downstream 74779 17179338 ~ 17179540 (-)
G2111655 NA non-coding downstream 99405 17153145 ~ 17154914 (-)
G2111573 NA non-coding downstream 291123 16958347 ~ 16963196 (-)
G2111565 NA non-coding downstream 315062 16939029 ~ 16939257 (-)
G2111812 NA non-coding upstream 144154 17404574 ~ 17404836 (-)
G2111810 NA non-coding upstream 148369 17408789 ~ 17410656 (-)
G2111889 NA non-coding upstream 266901 17527321 ~ 17603063 (-)
G2111912 NA non-coding upstream 306754 17567174 ~ 17570878 (-)
G2110939 NA other downstream 454450 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 1543390 15703333 ~ 15793545 (-)
G2109705 NA other downstream 1649856 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 1699422 15539768 ~ 15554897 (-)
G2105419 LOC104953893 other downstream 5754247 11499126 ~ 11500072 (-)
G2112905 NA other upstream 1200754 18461174 ~ 18461538 (-)
G2112922 NA other upstream 1239121 18499541 ~ 18499966 (-)
G2113211 NA other upstream 1397133 18657553 ~ 18659728 (-)
G2113287 NA other upstream 1481498 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 1524477 18784897 ~ 18785322 (-)

Expression


Co-expression Network