LOC110508659 (LOC106599263)


Basic Information

Item Value
gene id LOC110508659
gene name LOC106599263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18190804 ~ 18215071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966072.1
CAGCATATTATTAACAAACATAATTTaaatcccctgtctgtctgtcattgtaGAGGATTATCTTCAGTGCAGCGCCAACCTCATCTCTCAGATCCCCAAGATGAGATATGTTTCTCCGGACATAATTTTTGCAGCTCAGGATCTGGTTATCAAATCTCTGGAGGCAACCTGGTTCAAAAAGTACCAAGATACCTTTCCTCCTTGTACCAATGTTACTGACACCAGCACAAGAACCATCGTCCTTACAAACAAACTAAAACATGTGTGGAGCGTCTTCTCCGGGTTCATCAAAAGCATCTGTAAATTCCGACATGCCATGAAGGACAATCTGACCAGAAGCAAGTTTGAGGGCTACCTCAGACACAACTGGCAAGACTTCTCTCTTCGGTACATGCCATCAATGGGGAGCCGGCAAATTGAATCTGTTGACCTGTCCTCGGAGGAGGTAGACTCGTCCCACTTGAAGAGGCGAGTCATCAACCACAAACTGATAACAGTGGAGTTCCTTGTTAACGATCTGTCGTTctacctggagacagagagTTTCAGGAACATGGCAGACTCGGGCACTATGATGGCGTCTGCGGGCATGTATGGGGAGAATGACAATGCTCTGCTACACCAGAAAGCAGAGATGATCATCAAGCTCTTTCTCAAGTCAGAGATCTCTCCCAAACTGAGGGTTAACATAGCAGAAACTGCCAGGGATTCCATCCAGCAGGCCTTTGCCATGGGCAAGGTGGACCGAGGGCTCTTCCATGAAGCCATCATGGTTGTCTTCCCTAACCTCATCTTCTGCTGGAAAAAATTCTGTAGCCAAAAGGTGAAAAAAGGTATAGTCGGAGATAATTCTAAGAAAGAAGACTCCACCGAGCTTCATGACTACCTCCATCCCTTCAACTCTGACTGGTACCGGAAGGTACAAACTACCATGTCCATGATGGACGATTACACCACCCTTAGGTTTACTGTGCATGATGGTCTCAATCTGGTCCTGCCTCAAACCAGACTAGAATTGTGTGCCAGTGTTCTCAGCCCTGCCAAGAGCTCCATGGCTAGGCGGAGATCTGTCTCTACGCCTGCCTCCTCTGAATTTCCACAACTGGAGGTGTCCAACCAACGCAGAAGGTCCATTGGTCCCTTTCTCAGCAGCTGAAGCATCAGCCAGGTGGGTGCTACACTGTCGGTAATGGAGGATCCGCTACCTATGGAGGTGTGGATACCATGGAGGATCTGTAAACGTCGATCAAGGCGATGGGCCCTGATGAAGAGCTCCTGGCTTGTCTGGCAGGCTGTCTTTCTCCCTCGCTGTACTGTATCATTGATGCGCCCTCCGCTAACACCATACTGACTTTTCCAAACTGCCTCAACACTATTAGTTTTCCATCTTTCATTTCTTGTTCATTGAAGAATGATATTTTTTGTTAACAAGAGGACCATAATTTAAATAAATGTCAAAACTTTTTTTACGCTTTCCTAAATGGTTTTTAAACATATTGTATCCACATGTGTAGTTGTA
>XM_036966071.1
AGCATATTATTAACAAACATAATTTaaatcccctgtctgtctgtcattgtaGAGGATTATCTTCAGTGCAGCGCCAACCTCATCTCTCAGATCCCCAAGATGAGATATGTTTCTCCGGACATAATTTTTGCAGCTCAGGATCTGGTTATCAAATCTCTGGAGGCAACCTGGTTCAAAAAGTACCAAGATACCTTTCCTCCTTGTACCAATGTTACTGACACCAGCACAAGAACCATCGTCCTTACAAACAAACTAAAACATGTGTGGAGCGTCTTCTCCGGGTTCATCAAAAGCATCTGTAAATTCCGACATGCCATGAAGGACAATCTGACCAGAAGCAAGTTTGAGGGCTACCTCAGACACAACTGGCAAGACTTCTCTCTTCGGTACATGCCATCAATGGGGAGCCGGCAAATTGAATCTGTTGACCTGTCCTCGGAGGAGGTAGACTCGTCCCACTTGAAGAGGCGAGTCATCAACCACAAACTGATAACAGTGGAGTTCCTTGTTAACGATCTGTCGTTctacctggagacagagagTTTCAGGAACATGGCAGACTCGGGCACTATGATGGCGTCTGCGGGCATGTATGGGGAGAATGACAATGCTCTGCTACACCAGAAAGCAGAGATGATCATCAAGCTCTTTCTCAAGTCAGAGATCTCTCCCAAACTGAGGGTTAACATAGCAGAAACTGCCAGGGATTCCATCCAGCAGGCCTTTGCCATGGGCAAGGTGGACCGAGGGCTCTTCCATGAAGCCATCATGGTTGTCTTCCCTAACCTCATCTTCTGCTGGAAAAAATTCTGTAGCCAAAAGGTGAAAAAAGGTATAGTCGGAGATAATTCTAAGAAAGAAGACTCCACCGAGCTTCATGACTACCTCCATCCCTTCAACTCTGACTGGTACCGGAAGGTACAAACTACCATGTCCATGATGGACGATTACACCACCCTTAGGTTTACTGTGCATGATGGTCTCAATCTGGTCCTGCCTCAAACCAGACTAGAATTGTGTGCCAGTGTTCTCAGCCCTGCCAAGAGCTCCATGGCTAGGCGGAGATCTGTCTCTACGCCTGCCTCCTCTGAATTTCCACAACTGGAGGTGTCCAACCAACGCAGAAGGTCCATTGGTCCCTTTCTCAGTCCTCAAACGTCTCTGCCTCATTCTGACCTTACCCACTCATCTTCGGGATCCTTGCTCTCAAAAATCAAGGAGGACTAGTCTTATCTTTTGATAATACAAATAAAGACCATATATTTTCTATGTAAAAGTTGCATCAAGTGTATTTCCTTCAAATGGATAGTCAGGACAAGTCAGCACAAACAGCCACAGTACAGATGTGAATGTGGAAAGCCTTTTTTAAACATGTCTGATCATTCACCAGAAGGGGGAACCACTGACCAATACGGAACACTGCTATCAGCTCTATTATGGCGATGACATAGATTACTTGCCATATAGATTTGTAGCATGTTATGAAAAAGTCTAAAAATTGTTTTGGTAGTAATGCCTCCCATTCCATTAGGAAGAAAATACATAAACTTTAGTCAAACGTTTTTGGCTGACTGTGTGTTGTCTCATCCATGACAATAATCGCCCTACGGAGCTCAGTCCTCTTTGTCCCAGGAGATCCAGAGGTTTGTCTGAGGCTACGATGAGTAGGGACAAAGCATTAAGAGAGGTTCACTTTCCATACAGGTCTTTCATCCATGACACTCATCTTTCCCCCAACCTCGCCAACTGCACAGACTaggtcctctccttcctctcaaaACACTTATCCCCTCTCTTCTATcaaccctccatccccctctctctacctctaccacctcAACCCCCCGTTGTCCCGTGTCTCTCACATATCATTGTCTCGCCGTCCTCAGGACCTGTCTAACCCCAGGATAGGAGTCCACCTTAAAAACGTACAAGGCTTACAATGTGTCTCTTAGCTTTAAATGTCCTATGCATTATATCACTATGCCAATGACCCAAAGTCTTCTCCTGTGACATGTCACCACTAGAGCCGTAAAGCTAAAGGAGTCTTTTGGGATTCTGCTTCCttaaacactttatttggatcATCGATAACCAAAGATTACATACATTAATTTATATGGCATCATTAAATACTATAAATTGTACTTCCTTCAGTGCCGTAACTCAGATCACAAAGTAGAAGATTTTCAGCATAACATTTTGTTTTATATTGTGGTACACTcaatataaaacatatcattTGTATGGTACATACTCGGAACTGAGTTTTAAGATGTGAGTTTTGAATGAAGACACTGAGATTGATTTCCCATGATGCTTTGCCCTCCTCTTCTATGTCAATAATGGAGCCGCTGACGGAGAAAGAGACTCAGTGCTATAGGCATCATGGGTTTTATTTAATCCAGCTTTGCTCTTCTTTGGGATAATAACTTTGTTGCTTCATTCCCGGGCCTTGCCTGTCAGCTTGACATAGCAATATCTCCCAACTGCACTGTTTCATAGTCAGTTTCATTTATTTCAAAACACCATTTCACACCCTGCTGGCTTTCGCTAGGTATTATACAGCGTTTGGGGAGAGGGCTGTAGATTGAATCGTGACAGAGACCGTGTCTCTTCCTGTGAAAAAATAAGTAAATGTTGTAAATGGCAGACTATATCAAATGGTTTTTTTTCTCCCCATAATGTTTGGGGTGTTTTCTGTTCTAGTCTCTTATATCCTTGTTGGTTGTCAAGACTTGATAAAATATTTCTTGTTCAAAAGGCATTgcccctcattttgtctgccgTTATTGTTGGATTTTAGCATACACTGTACATTTTGGTGATCTCCAAAGCAGTAGAAACCAATAAACATGTTTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966072.1 False 1519 mRNA 0.46 11 18190804 18215071
XM_036966071.1 True 2864 mRNA 0.43 11 18206497 18215070

Neighbor

gene id symbol gene type direction distance location
LOC110508658 LOC106599262 coding downstream 15232 18102546 ~ 18175572 (-)
LOC110508654 LOC106599254 coding downstream 116650 17987062 ~ 18074154 (-)
LOC110508653 LOC106599252 coding downstream 423464 17628997 ~ 17767340 (-)
LOC100653470 LOC106599250 coding downstream 568654 17565752 ~ 17622150 (-)
LOC110508648 LOC106599664 coding downstream 789775 17286956 ~ 17401108 (-)
LOC118944819 LOC106599263 coding upstream 127 18215198 ~ 18222845 (-)
LOC110508660 LOC105019197 coding upstream 81369 18295288 ~ 18300984 (-)
cdc20 cdc20 coding upstream 145993 18361064 ~ 18365995 (-)
fitm1l LOC106599271 coding upstream 157582 18372653 ~ 18375659 (-)
LOC110508665 LOC106599272 coding upstream 213753 18428824 ~ 18481333 (-)
G2112324 NA non-coding downstream 237735 17949564 ~ 17953069 (-)
G2112232 NA non-coding downstream 373963 17816606 ~ 17816841 (-)
G2112062 NA non-coding downstream 379115 17811102 ~ 17811689 (-)
G2112035 NA non-coding downstream 400486 17790031 ~ 17790318 (-)
G2112018 NA non-coding downstream 413518 17777055 ~ 17777286 (-)
G2112605 NA non-coding upstream 16538 18231609 ~ 18231993 (-)
G2112879 NA non-coding upstream 167162 18382233 ~ 18382467 (-)
G2112880 NA non-coding upstream 167541 18382612 ~ 18382899 (-)
LOC110508646 LOC106599672 other downstream 933409 17254319 ~ 17260420 (-)
G2110939 NA other downstream 1390935 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 2479875 15703333 ~ 15793545 (-)
G2109705 NA other downstream 2586341 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 2635907 15539768 ~ 15554897 (-)
G2112905 NA other upstream 246103 18461174 ~ 18461538 (-)
G2112922 NA other upstream 284470 18499541 ~ 18499966 (-)
G2113211 NA other upstream 442482 18657553 ~ 18659728 (-)
G2113287 NA other upstream 526847 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 569826 18784897 ~ 18785322 (-)

Expression


Co-expression Network