cdc20 (cdc20)


Basic Information

Item Value
gene id cdc20
gene name cdc20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18361064 ~ 18365995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589353.2
TAATTTAAAGAAAGTTCGTCATTGGTTGTTGAAATTTTAAACCTGAGCTGCGGCAGAAAGGAACACGTTTCAGTGAAGTTTGTGAGTTGATTTTCCCTTCCAGTAGTTCTAAAAGTACATTTTTATCATCAACGACGTGTGGAATTAATTTTATAGAAGTCCGAAAGTCAGATTCAGACATGGCTCAATTTGGATTCGACAACGACATTCACAGCATTCTGAAGCTGGATATGCCAATCACAAACGCGCCCATGGCGAGGTGGCAGAGAAAAGCCAGTTCGTCGATGTCGACCAGCTGTGCCAACACCAGCGCTCTATCACCTGGCAAATCCGGAAACCGATCTCTTAGTCTGTCCAAGACGCCCAGTAAAACACCAGGTAAAAATGGAAAGACACAGTGCACACCTTCCAAGGCAGGTGGTGACCGTTTCATTCCCACTAGAAACAACAAACAGATGGATGTGGCAAGCTTCCTGCTCTCAAAGGAAAATGAACCCATGGACACAAACCCCTCAGCAGCAACATCAGAGAACCAGAAAGCATGGTCTGTTACACTCAATGGATATGACATTGAGGAGGCAAAGATCTTGCATCTGggaggaaaacccttgaatgctCCAGAAGGTTACCAGAACAACCTAAAAGTTCTCTACAGTCAGATTCCTACCCCAGTTTCCACCAAAAAGAACCGATACATACCATCAGTGCCTGACAGAATCTTAGACGCTCCTGAACTCCGAAATGATTTCTATCTGAACCTACTAGACTGGAGCAGCCGGAACCTTCTAGCAGTTGCCCTTCACAGCAATCTTTATCTGTGGGACGCCACCCAGGGTGACATCGTCCTACTGATGAAGATGGAGCAGGTGGAGGACTACATCTGCTCTGTGTCATGGATCAAGGAGGGCAACTTCCTTGCCCTTGGTACCAGTGACTGCAAAGTTCAGTTGTGGGATGTGGAGAACCAGAAGCGTCTACGCAGCATGTCTGGCCACACTGCCAGAGTTGGCAGTCTGAGTTGGAACAATCACATTCTTTCCAGTGGCTCCAGATCTGGTCACATCCACCACCATGATGTAAGGGTAGCAGACCACCACATCTTCACCCTGTCCGGACACTCTCAGGAGGTGTGTGGGCTGGAGTGGTCCCCTGATGGAAGATACCTGGCCAGTGGCGGCAACGACAACCTTGTGTACGTGTGGCCAGGTGTGCAGGAGGGCAGCGGCCAAGGCAGTAATGCTGTCCACAGCTTCAATGAGCACCAAGGTGCAGTCAAGGCTTTGGCCTGGTGCCCATGGCAACCTAACATTCTTGCGTCTGGAGGGGGCACCAGTGACCGTCACATCCGCATCTGGAACGTCACCAGTGGCTCTTGCATCAGTGCCCTGGACACTCAGTCTCAGGTGTCCTCTTTGAAGTTTGCGCCAAACTACAAGGAATTGGTCTCCGGCCACGGATATGCCCACGACAACGTAGTCATCTGGAAGTATCCCTCCTTGACTAAAGTGGCAGAGCTCAATGgTCATGAGGGCAGGGTCTTGAACATTACCATGAGTCCAGACTGCTCGACTATCGCCACTGTAGCCGGTGATGAAACTGTCCGCCTCTGGAAGAGCTTTGAGCTGGATCCAGTCAAGAAGAAGGCCAAAGAGAGGATGGTGAAGTCCACCAGCAGCAGCATCCACCAATCTATCCGATAATTAACCTTTTTGTATTGTGTGTTCAAGTTAGTTATTGATCAACTCCTAATTCTTTACTAATGTACAAAATGTTTATTCACTGTAAAATAATAAAGATTGCCACTTTTAAA
>XM_021589355.2
GCTTCCATGGTAACCTCCCAAATCTTTTGAACAAACCAATCACGACAGCGCATTTAGTAATTTAAAGAAAGTTCGTCATTGGTTGTTGAAATTTTAAACCTGAGCTGCGGCAGAAAGGAACACGTTTCAGTGAAGTTTGAAGTCCGAAAGTCAGATTCAGACATGGCTCAATTTGGATTCGACAACGACATTCACAGCATTCTGAAGCTGGATATGCCAATCACAAACGCGCCCATGGCGAGGTGGCAGAGAAAAGCCAGTTCGTCGATGTCGACCAGCTGTGCCAACACCAGCGCTCTATCACCTGGCAAATCCGGAAACCGATCTCTTAGTCTGTCCAAGACGCCCAGTAAAACACCAGGTAAAAATGGAAAGACACAGTGCACACCTTCCAAGGCAGGTGGTGACCGTTTCATTCCCACTAGAAACAACAAACAGATGGATGTGGCAAGCTTCCTGCTCTCAAAGGAAAATGAACCCATGGACACAAACCCCTCAGCAGCAACATCAGAGAACCAGAAAGCATGGTCTGTTACACTCAATGGATATGACATTGAGGAGGCAAAGATCTTGCATCTGggaggaaaacccttgaatgctCCAGAAGGTTACCAGAACAACCTAAAAGTTCTCTACAGTCAGATTCCTACCCCAGTTTCCACCAAAAAGAACCGATACATACCATCAGTGCCTGACAGAATCTTAGACGCTCCTGAACTCCGAAATGATTTCTATCTGAACCTACTAGACTGGAGCAGCCGGAACCTTCTAGCAGTTGCCCTTCACAGCAATCTTTATCTGTGGGACGCCACCCAGGGTGACATCGTCCTACTGATGAAGATGGAGCAGGTGGAGGACTACATCTGCTCTGTGTCATGGATCAAGGAGGGCAACTTCCTTGCCCTTGGTACCAGTGACTGCAAAGTTCAGTTGTGGGATGTGGAGAACCAGAAGCGTCTACGCAGCATGTCTGGCCACACTGCCAGAGTTGGCAGTCTGAGTTGGAACAATCACATTCTTTCCAGTGGCTCCAGATCTGGTCACATCCACCACCATGATGTAAGGGTAGCAGACCACCACATCTTCACCCTGTCCGGACACTCTCAGGAGGTGTGTGGGCTGGAGTGGTCCCCTGATGGAAGATACCTGGCCAGTGGCGGCAACGACAACCTTGTGTACGTGTGGCCAGGTGTGCAGGAGGGCAGCGGCCAAGGCAGTAATGCTGTCCACAGCTTCAATGAGCACCAAGGTGCAGTCAAGGCTTTGGCCTGGTGCCCATGGCAACCTAACATTCTTGCGTCTGGAGGGGGCACCAGTGACCGTCACATCCGCATCTGGAACGTCACCAGTGGCTCTTGCATCAGTGCCCTGGACACTCAGTCTCAGGTGTCCTCTTTGAAGTTTGCGCCAAACTACAAGGAATTGGTCTCCGGCCACGGATATGCCCACGACAACGTAGTCATCTGGAAGTATCCCTCCTTGACTAAAGTGGCAGAGCTCAATGgTCATGAGGGCAGGGTCTTGAACATTACCATGAGTCCAGACTGCTCGACTATCGCCACTGTAGCCGGTGATGAAACTGTCCGCCTCTGGAAGAGCTTTGAGCTGGATCCAGTCAAGAAGAAGGCCAAAGAGAGGATGGTGAAGTCCACCAGCAGCAGCATCCACCAATCTATCCGATAATTAACCTTTTTGTATTGTGTGTTCAAGTTAGTTATTGATCAACTCCTAATTCTTTACTAATGTACAAAATGTTTATTCACTGTAAAATAATAAAGATTGCCACTTTTAAA

Function

symbol description
cdc20 Predicted to enable anaphase-promoting complex binding activity and ubiquitin ligase activator activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and positive regulation of anaphase-promoting complex-dependent catabolic process. Predicted to act upstream of or within cell division and positive regulation of ubiquitin protein ligase activity. Predicted to be part of anaphase-promoting complex. Is expressed in proliferative region. Orthologous to human CDC20 (cell division cycle 20).

NR:

description
cell division cycle protein 20 homolog

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
K03363 CDC20; cell division cycle 20, cofactor of APC complex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589353.2 False 1810 mRNA 0.48 11 18361064 18365938
XM_021589355.2 True 1793 mRNA 0.49 11 18361064 18365995

Neighbor

gene id symbol gene type direction distance location
LOC110508660 LOC105019197 coding downstream 60080 18295288 ~ 18300984 (-)
LOC118944819 LOC106599263 coding downstream 138219 18215198 ~ 18222845 (-)
LOC110508659 LOC106599263 coding downstream 145993 18190804 ~ 18215071 (-)
LOC110508658 LOC106599262 coding downstream 185492 18102546 ~ 18175572 (-)
LOC110508654 LOC106599254 coding downstream 286910 17987062 ~ 18074154 (-)
fitm1l LOC106599271 coding upstream 6658 18372653 ~ 18375659 (-)
LOC110508665 LOC106599272 coding upstream 62829 18428824 ~ 18481333 (-)
LOC110508666 LOC106599276 coding upstream 118350 18484345 ~ 18517197 (-)
LOC110508670 LOC106599287 coding upstream 472318 18838313 ~ 18849139 (-)
LOC110508671 LOC106599289 coding upstream 498844 18864839 ~ 18879323 (-)
G2112605 NA non-coding downstream 129071 18231609 ~ 18231993 (-)
G2112604 gs04 non-coding downstream 132413 18167839 ~ 18228651 (-)
G2112324 NA non-coding downstream 407995 17949564 ~ 17953069 (-)
G2112879 NA non-coding upstream 16238 18382233 ~ 18382467 (-)
G2112880 NA non-coding upstream 16617 18382612 ~ 18382899 (-)
G2112888 NA non-coding upstream 25268 18391263 ~ 18391594 (-)
G2112892 NA non-coding upstream 30297 18396292 ~ 18396515 (-)
G2112867 LOC105009935 non-coding upstream 47567 18413562 ~ 18420017 (-)
LOC110508646 LOC106599672 other downstream 1103669 17254319 ~ 17260420 (-)
G2110939 NA other downstream 1561195 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 2650135 15703333 ~ 15793545 (-)
G2109705 NA other downstream 2756601 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 2806167 15539768 ~ 15554897 (-)
G2112905 NA other upstream 95179 18461174 ~ 18461538 (-)
G2112922 NA other upstream 133546 18499541 ~ 18499966 (-)
G2113211 NA other upstream 291558 18657553 ~ 18659728 (-)
G2113287 NA other upstream 375923 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 418902 18784897 ~ 18785322 (-)

Expression


Co-expression Network