Item | Value |
---|---|
gene id | LOC110508668 |
gene name | LOC106599284 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048592.1 |
NCBI id | CM023246.2 |
chromosome length | 43716683 |
location | 18673302 ~ 18724171 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
collagen alpha-1(XVIII) chain-like isoform X4 |
id | description |
---|---|
K08135 | COL15A; collagen type XV alpha |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021589376.2 | False | 5400 | mRNA | 0.52 | 44 | 18673302 | 18724171 |
XM_021589371.2 | False | 5815 | mRNA | 0.53 | 43 | 18694512 | 18724171 |
XM_021589372.2 | False | 5806 | mRNA | 0.53 | 43 | 18694512 | 18724171 |
XM_021589374.2 | False | 5773 | mRNA | 0.53 | 42 | 18694512 | 18724171 |
XM_021589375.2 | True | 5719 | mRNA | 0.53 | 42 | 18694512 | 18724171 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110508667 | LOC106599281 | coding | upstream | 14742 | 18579463 ~ 18658560 (+) |
LOC100136150 | LOC105009935 | coding | upstream | 253295 | 18406183 ~ 18420007 (+) |
LOC110508663 | LOC106599269 | coding | upstream | 302418 | 18366089 ~ 18370884 (+) |
LOC110508661 | LOC106599266 | coding | upstream | 318559 | 18316616 ~ 18354743 (+) |
gs04 | gs04 | coding | upstream | 444912 | 18225312 ~ 18228390 (+) |
LOC110508669 | LOC106599285 | coding | downstream | 2083 | 18726254 ~ 18816586 (+) |
LOC110508672 | NA | coding | downstream | 125015 | 18849186 ~ 18865414 (+) |
LOC110508675 | LOC106599295 | coding | downstream | 262526 | 18986697 ~ 19011641 (+) |
LOC110508679 | LOC106599305 | coding | downstream | 481201 | 19205372 ~ 19209070 (+) |
LOC110508681 | LOC106599307 | coding | downstream | 493310 | 19217481 ~ 19322102 (+) |
G2113037 | NA | non-coding | upstream | 46145 | 18602787 ~ 18627157 (+) |
G2112996 | NA | non-coding | upstream | 102122 | 18570906 ~ 18571180 (+) |
G2112979 | NA | non-coding | upstream | 111712 | 18561307 ~ 18561590 (+) |
G2112976 | NA | non-coding | upstream | 114460 | 18558622 ~ 18558842 (+) |
G2112974 | NA | non-coding | upstream | 115493 | 18557598 ~ 18557809 (+) |
G2113088 | NA | non-coding | downstream | 16077 | 18740248 ~ 18740739 (+) |
G2113017 | NA | non-coding | downstream | 44668 | 18768839 ~ 18769063 (+) |
G2113089 | NA | non-coding | downstream | 54319 | 18778490 ~ 18778729 (+) |
G2113090 | NA | non-coding | downstream | 63575 | 18787746 ~ 18787986 (+) |
G2113091 | NA | non-coding | downstream | 69218 | 18793389 ~ 18793687 (+) |
G2113059 | NA | other | upstream | 4806 | 18667115 ~ 18668496 (+) |
G2112127 | NA | other | upstream | 769378 | 17903198 ~ 17903924 (+) |
G2111491 | NA | other | upstream | 917721 | 17754937 ~ 17755581 (+) |
G2111457 | NA | other | upstream | 964673 | 17708256 ~ 17708629 (+) |
G2111300 | NA | other | upstream | 1257070 | 17411144 ~ 17416232 (+) |
G2113578 | NA | other | downstream | 351906 | 19076077 ~ 19076418 (+) |
LOC110508695 | LOC106599333 | other | downstream | 899297 | 19623468 ~ 19636825 (+) |
G2115369 | NA | other | downstream | 1717562 | 20441733 ~ 20442169 (+) |
LOC110508722 | LOC106569260 | other | downstream | 2116399 | 20840508 ~ 20842019 (+) |
G2116347 | NA | other | downstream | 2650324 | 21374495 ~ 21375078 (+) |