LOC110508672


Basic Information

Item Value
gene id LOC110508672
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18849186 ~ 18865414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471341.2
ACTCACGTGATGGACATCTCGTCGGAAGTTATGTGgttagatttttgttgttgttataaaACAAATACAGACCTGCTATGACTCTAGTCTACTCCCCAGGGTCGTCTTGACACTGGTACAGAGTGTGTGCTACTCAGAGCAACAATCATTAGGGTCTCACCAAGCAAACTCCAGCAGATGGCCATCTACACCACCTTGTTGACTGGTGCTGGATGATGCATTACCTTCTGCAAATTAAGTATCACTTAGAGATCTTCTCCAGGTTGGACTACCACAGTCCTAGCCCTTGAGCAGCTGGAAGCCAACCAGACAGCCATGGACATTCTGGGAGCACCACCCCCGAAGGTCCACAACATCCATCTGTCTGAACCGGCACAACTATGTGGAACGTTACTGCTCATTCCTCCTACATGGGAGCCAACTAGCAGCATAACTGTTTGCTATCAAAATTCTAGTGGCAATATTATTCTATCGAAAGACAGAAAATTGATTGATACATAGAATGTAAGTCCACACTGACCTTCAAAGTACATGAAGGTCGTTTGACCTAATGCATACAGTACCTTTGTCTTCTCCCTGGCAGCGCTAGGCGGAATTTAACAGGCAGTGCTGTAGAGGGTCAGCTTAGACCACACCACTGTCAGATAAGACAGGACTTGACACAGCCAAACTGGTCTTCCTGATCTGCTCACCAGAACTAGTGCGATGAAGGTATAACTGCTGCACTCGTCCGTCTCCTCATGTCAGTCGCAGACTTGTAGCCATAGCACTTTGACATGCATTCTTTCAGGACACCATTGGACCTCGTTTTGACAACGGCAGACACAAGATGCTTCCCAGTTTAAAATCACCACAGAAATATAATTGCTTTGACCAATGTTTATTGATGCTTTGTACATCCTCAAGACATTTACATACATTGTACAAGGAAATAAGTGCCATTTATGCATCACATGTCATGCACATTCATTATAAACAGTGCTGTCCTGAGCAATATGTACATGCCTTAGGAGAATGAAGGTACTGTAAAGAGCAAATTAACAATGTAATTGCTTAGTACAAAGCCATCATATCTTTATAGCCGGCACTTGGAAAAAATAAATTTAGTTATTGGTTCCAGTTGTACTATACACAATCTGTGCAACCAGAAAATGTCTCCCATAGTGTTCTATTGCACTGATGTATGATTGATTAATTAGGACATTACTATTTATTCACAGTGAAAATGAAATATAAGACATGGAAATAATCAGTGATATAGATTAATTGAAGTTATGAACAATTGTACTCATGAAAGCTGAACGTACTGCATGAATATTAGGAAAAGAATGGTAAACAAGCAGAACATGAACGACATTGACCGAATGTGAAAGAATGGCAAACAAAACGTCAGTTCATTAAAATTGTTttaaaattaataaaaatgtgATGCAGACAGAG

Function

NR:

description
PREDICTED: cytochrome c oxidase assembly factor 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471341.2 True 1440 mRNA 0.41 3 18849186 18865414

Neighbor

gene id symbol gene type direction distance location
LOC110508669 LOC106599285 coding upstream 32600 18726254 ~ 18816586 (+)
LOC110508668 LOC106599284 coding upstream 125015 18673302 ~ 18724171 (+)
LOC110508667 LOC106599281 coding upstream 190626 18579463 ~ 18658560 (+)
LOC100136150 LOC105009935 coding upstream 429179 18406183 ~ 18420007 (+)
LOC110508663 LOC106599269 coding upstream 478302 18366089 ~ 18370884 (+)
LOC110508675 LOC106599295 coding downstream 121283 18986697 ~ 19011641 (+)
LOC110508679 LOC106599305 coding downstream 339958 19205372 ~ 19209070 (+)
LOC110508681 LOC106599307 coding downstream 352067 19217481 ~ 19322102 (+)
LOC110508686 LOC106599593 coding downstream 506595 19372009 ~ 19374568 (+)
LOC110508689 LOC106599321 coding downstream 574211 19439625 ~ 19458620 (+)
G2113100 NA non-coding upstream 45536 18803447 ~ 18803650 (+)
G2113098 NA non-coding upstream 46163 18802802 ~ 18803023 (+)
G2113096 NA non-coding upstream 49843 18799125 ~ 18799343 (+)
G2113095 NA non-coding upstream 50348 18798526 ~ 18798838 (+)
G2113147 NA non-coding downstream 24966 18890380 ~ 18890616 (+)
G2113433 NA non-coding downstream 77865 18943279 ~ 18943482 (+)
G2113438 NA non-coding downstream 81925 18947339 ~ 18947749 (+)
G2113439 NA non-coding downstream 83068 18948482 ~ 18948794 (+)
G2113442 NA non-coding downstream 85726 18951140 ~ 18951366 (+)
G2113059 NA other upstream 180690 18667115 ~ 18668496 (+)
G2112127 NA other upstream 945262 17903198 ~ 17903924 (+)
G2111491 NA other upstream 1093605 17754937 ~ 17755581 (+)
G2111457 NA other upstream 1140557 17708256 ~ 17708629 (+)
G2111300 NA other upstream 1432954 17411144 ~ 17416232 (+)
G2113578 NA other downstream 210663 19076077 ~ 19076418 (+)
LOC110508695 LOC106599333 other downstream 758054 19623468 ~ 19636825 (+)
G2115369 NA other downstream 1576319 20441733 ~ 20442169 (+)
LOC110508722 LOC106569260 other downstream 1975156 20840508 ~ 20842019 (+)
G2116347 NA other downstream 2509081 21374495 ~ 21375078 (+)

Expression


Co-expression Network