LOC118944847


Basic Information

Item Value
gene id LOC118944847
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18958044 ~ 18966479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040223.1
TCTACTTGAGGGGCATGCATTACTCGTAACTGATATAGATGTTCACACTGCCTTTTTAgactctgttttcatgttttTCCATGTCATTGCCGCTCTGTAGGGTGAAACTGGGCTCAGAGGCAGAAAAGGAGAGGTCtacaggctgctcgttatggcgcacacctgtcaccatcgttacgcgcacctgcacgtcgtcagactcacctggacatCACTTcgttgattacctgccctatatatgtccctccctttggctcccctgcctcagccggctcgacaggctcccctgcctcagccggcttGTCGGGCTTTCATGCCTTTGCCAGATCCCCTGCGTCCACTGACTCGTCAGGCTCTCATACCTCaaccggatcgccaggctcccctgcctcagccggtcTGGCAGGTTCCCTCGTCCCAGCCGGCGACAGGTTCCTGCGCATCAGCGGGGGTGACCGGTCCGCCCCTGATCCCCAGGATCGTCCCTTGGGTTGGCATCCTGCGGCTGGTGCCAAACACGCCCGGGAGGGGGTACCGTCAGTTATGCTCTCTCTCCGGCACTCTAGGTCGCCATGCTCCTGCGTCTCAGCCGGATAGAGTTTCCTGTGCCTCTGCAGAGGTGTCCGGTCCGCTCCTGTTCACCGGGATAGTCACTTTGGGTGGCGTTCtgcagctggagccgcgcgtcgggAAGGGGATACtgtcatgtgtgctccctctccgacCTCGTTACGCGCatcgtcagactcacctggactccatcacttcgttgattacctgccc
>TU2416848
CCTCAGGCAGAAAACGTTGACTTTGGATTTCTCAGCATCATAAACTCACAACACATATCATTATACTGCTGGCTGTAGGCATATAATTCCTGTGCTTTTGGCCTTGTGCCATTCAATACTAACTGGTAGAAGTCCCCTGAGAATTAAATACAAATTGCAGGACATGGAAAGGAAATAAATTAGTGTGGCTTCATTTTAATGTCACAGAGAAGGCAGAGTCAACTTGCATGTACATGTATTATTGTTATACAGTTTACAGTACTGTAATTGTTCAAGTGTTTCCTGTTGTTTCTCtagggagcagagggagaaacGGGGATTCAAGGGTTACCTTGTGACCAAGGACTGCCGGGTGGTTCAAAGgGTGAGAGGGGGAATAATGGTGTGCCTGAGACCCCTGGGACAAGCGGTGAAACTGGGCTCAGAGGCAGAAAAGGAGAGGTCtacaggctgctcgttatggcgcacacctgtcaccatcgttacgcgcacctgcacgtcgtcagactcacctggacatCACTTcgttgattacctgccctatatatgtccctccctttggctcccctgcctcagccggctcgacaggctcccctgcctcagccggcttGTCGGGCTTTCATGCCTTTGCCAGATCCCCTGCGTCCACTGACTCGTCAGGCTCTCATACCTCaaccggatcgccaggctcccctgcctcagccggtcTGGCAGGTTCCCTCGTCCCAGCCGGCGACAGGTTCCTGCGCATCAGCGGGGGTGACCGGTCCGCCCCTGATCCCCAGGATCGTCCCTTGGGTTGGCATCCTGCGGCTGGTGCCAAACACGCCCGGGAGGGGGTACCGTCAGTTATGCTCTCTCTCCGGCACTCTAGGTCGCCATGCTCCTGCGTCTCAGCCGGATAGAGTTTCCTGTGCCTCTGCAGAGGTGTCCGGTCCGCTCCTGTTCACCGGGATAGTCACTTTGGGTGGCGTTCtgcagctggagccgcgcgtcgggAAGGGGATACtgtcatgtgtgctccctctccgacCTCGTTACGCGCatcgtcagactcacctggactccatcacttcgttgattacctgccctatatatgtccctccctttggttccttccccagtcatcattgtttctgtttcatgtgtgtgtgttgttcgaggttcttgttttatattatgttctgttttattttattaaaacactcactccctga
>TU2416847
CCTCAGGCAGAAAACGTTGACTTTGGATTTCTCAGCATCATAAACTCACAACACATATCATTATACTGCTGGCTGTAGGCATATAATTCCTGTGCTTTTGGCCTTGTGCCATTCAATACTAACTGGTAGAAGTCCCCTGAGAATTAAATACAAATTGCAGGACATGGAAAGGAAATAAATTAGTGTGGCTTCATTTTAATGTCACAGAGAAGGCAGAGTCAACTTGCATGTACATGTATTATTGTTATACAGTTTACAGTACTGTAATTGTTCAAGTGTTTCCTGTTGTTTCTCtagggagcagagggagaaacGGGGATTCAAGGGTTACCTTGTGACCAAGGACTGCCGGGTGGTTCAAAGgGTGAGAGGGGGAATAATGGTGTGCCTGAGACCCCTGGGACAAGCGGTGAAACTGGGCTCAGAGGCAGAAAAGGAGAGGTCtacaggctgctcgttatggcgcacacctgtcaccatcgttacgcgcacctgcacgtcgtcagactcacctggacatCACTTcgttgattacctgccctatatatgtccctccctttggctcccctgcctcagccggctcgacaggctcccctgcctcagccggctcgacaggctcccctgcctcagccggcttGTCGGGCTTTCATGCCTTTGCCAGATCCCCTGCGTCCACTGACTCGTCAGGCTCTCATACCTCaaccggatcgccaggctcccctgcctcagccggtcTGGCAGGTTCCCTCGTCCCAGCCGGCGACAGGTTCCTGCGCATCAGCGGGGGTGACCGGTCCGCCCCTGATCCCCAGGATCGTCCCTTGGGTTGGCATCCTGCGGCTGGTGCCAAACACGCCCGGGAGGGGGTACCGTCAGTTATGCTCTCTCTCCGGCACTCTAGGTCGCCATGCTCCTGCGTCTCAGCCGGATAGAGTTTCCTGTGCCTCTGCAGAGGTGTCCGGTCCGCTCCTGTTCACCGGGATAGTCACTTTGGGTGGCGTTCtgcagctggagccgcgcgtcgggAAGGGGATACtgtcatgtgtgctccctctccgacCTCGTTACGCGCatcgtcagactcacctggactccatcacttcgttgattacctgccctatatatgtccctccctttggttccttccccagtcatcattgtttctgtttcatgtgtgt
>TU2416849
gttgaagtgtacctatgatgaaaattaccggcctctcatctttttaagtgggagaacttgcacaattggtggcttgtgtctgagccgttgaattgcgactctactttgtctctattctggcgcttagcttgtttgattgccttgcggagggaatagctacactttgtattcggtcatgtttccggtcaccttgccctggttaaaaactgtggttcgcgctttcagttttatgtgaatgctgccatcaatccactgtttctggtttgggaatgttttaatcgttgctatgggtacGACATCGTCAATatactttctaatgaactcgctcaccgaatcagcgtattcgtcaatgttgttgtttgaggtGAGTCTGGGGTGAGGTAATCGATAGTAAGGCTAATGTAGGGTTGACTACCCCCCTTTTACTGGTCTAGAGATCAGTAGTTGCAAGAAACCATGTGGCTTGAGCCAAACTTTTTCGAACATCAGCTTTAACCTGGTTGTACAGGTTTCAGTCTTGGAAAATAATGTTTGTGATGACACTTTGTAGTGAGGCACGGGAACCTTTATTATCCTCAGAAAGCCAGGCCTCTCAACAATTTGAAATGGCATCATGTCCTTTGCAATGTAATATGAAAGGGCTGCAGTGAGGTCTTGAGCATGTTTTGATAGGGTTGCATAAGCTGCCTGCCTTTTAAATGGTTGCTCGAGTGTCTGTGTCACAACTGTAGATGAGGAGGGGGCCCACTATGTAAACAAGGGAATagcaaatgtattattattattatgtgttaCATTATTATTCACTCactctgtcacgtgtgctccctctctgacCTCTAGGTCtacaggctgctcgttatggcgcacacctgtcaccatcgttacgcgcacctgcacgtcgtcagactcacctggacatCACTTcgttgattacctgccctatatatgtccctccctttggctcccctgcctcagccggctcgacaggctcccctgcctcagccggctcgacaggctcccctgcctcagccggctcgacaggctcccctgcctcagccggcttGTCGGGCTTTCATGCCTTTGCCAGATCCCCTGCGTCCACTGACTCGTCAGGCTCTCATACCTCaaccggatcgccaggctcccctgcctcagccggtcTGGCAGGTTCCCTCGTCCCAGCCGGCGACAGGTTCCTGCGCATCAGCGGGGGTGACCGGTCCGCCCCTGATCCCCAGGATCGTCCCTTGGGTTGGCATCCTGCGGCTGGTGCCAAACACGCCCGGGAGGGGGTACCGTCAGTTATGCTCTCTCTCCGGCACTCTAGGTCGCCATGCTCCTGCGTCTCAGCCGGATAGAGTTTCCTGTGCCTCTGCAGAGGTGTCCGGTCCGCTCCTGTTCACCGGGATAGTCACTTTGGGTGGCGTTCtgcagctggagccgcgcgtcgggAAGGGGATACtgtcatgtgtgctccctctccgacCTCGTTACGCGCatcgtcagactcacctggactccatcacttcgttgattacctgccctatatatgtccctccctttggttccttccccagtcatcattgtttctgtttcatgtgtgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040223.1 False 783 mRNA 0.59 3 18958170 18965727
TU2416848 False 1217 TUCP 0.53 5 18958044 18966479
TU2416847 False 1178 TUCP 0.55 5 18958110 18966479
TU2416849 True 1607 TUCP 0.52 2 18958110 18959832

Neighbor

gene id symbol gene type direction distance location
LOC110508673 LOC106599588 coding downstream 10982 18945248 ~ 18947188 (-)
LOC110508176 LOC106599291 coding downstream 31157 18880690 ~ 18927013 (-)
LOC110508671 LOC106599289 coding downstream 78847 18864839 ~ 18879323 (-)
LOC110508670 LOC106599287 coding downstream 109031 18838313 ~ 18849139 (-)
LOC110508666 LOC106599276 coding downstream 440973 18484345 ~ 18517197 (-)
LOC110508676 LOC106599297 coding upstream 49414 19015141 ~ 19025982 (-)
LOC118944890 LOC106599299 coding upstream 61641 19027368 ~ 19028856 (-)
LOC110508177 LOC106599299 coding upstream 63572 19029299 ~ 19067614 (-)
LOC110508178 LOC106569286 coding upstream 103308 19069035 ~ 19070878 (-)
LOC110508677 LOC106599302 coding upstream 115811 19081538 ~ 19095065 (-)
G2113461 NA non-coding downstream 16924 18940813 ~ 18941246 (-)
G2113424 NA non-coding downstream 22046 18935904 ~ 18936124 (-)
G2113418 NA non-coding downstream 25657 18932290 ~ 18932513 (-)
G2113416 NA non-coding downstream 27264 18930504 ~ 18930906 (-)
G2113342 NA non-coding downstream 150420 18807499 ~ 18807750 (-)
G2113479 NA non-coding upstream 7563 18973290 ~ 18973588 (-)
G2113482 NA non-coding upstream 10759 18976486 ~ 18976771 (-)
G2113483 NA non-coding upstream 12338 18978065 ~ 18978479 (-)
G2113484 NA non-coding upstream 14739 18980466 ~ 18980751 (-)
G2113465 NA non-coding upstream 16350 18982077 ~ 18982376 (-)
G2113320 LOC100194703 other downstream 172848 18784897 ~ 18785322 (-)
G2113287 NA other downstream 215886 18741918 ~ 18742284 (-)
G2113211 NA other downstream 298442 18657553 ~ 18659728 (-)
G2112922 NA other downstream 458204 18499541 ~ 18499966 (-)
G2112905 NA other downstream 496632 18461174 ~ 18461538 (-)
G2113520 LOC106599295 other upstream 41505 19007232 ~ 19011635 (-)
LOC110508678 LOC105024244 other upstream 150363 19116082 ~ 19185326 (-)
G2115838 NA other upstream 1893413 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2904958 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2907489 21873216 ~ 21876709 (-)

Expression


Co-expression Network