LOC110508676 (LOC106599297)


Basic Information

Item Value
gene id LOC110508676
gene name LOC106599297
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19015141 ~ 19025982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589386.2
TGTATCAGTTTCTCACTCTGACGAGCTTGTAGTTATAACAAGTTCAACTACCTAAGACATTGTCTCGAATCTATATTGGGCATTCATATTTTGAAAAAATTAACAACTAAGGAAGAATTGTTCACTTATCTCATTGACTTCTTATACCCCAAACCCCGACCAGGTCTGTTTCCCAACGTTCCCGGAAGTCTTGCGATGTTatgcctctgggtttagaaactgtgTTGCAGCTAATGACTTCTGTTTATAGAAATCAACGGTAACATAAAATACAGTTGTGAGAAATTGCATACTCTTTCAAAAGTCGCGCACACATGATGCTCTCAAGCGCGCTGTGTCAGCTGCTACTGGGGCGGCGCACGAGAAAGGTCAACCAGGAACTGAACCACGAGAAGCAGTGTTGGAATTTAAATTAGATCATTTGAACGACAGTTTACCTATTCAAACGTATTATTAGAGTTGACCCAGCTTGGcgttgttgtcatggaggagacgAACAGGGAGGCTGTCGCTACCGCGGTGCAGAGGGTGGCTGGGATGCTGCAGCGCTCGGACCAGTTGGACAAAGTAGAGCAGTACCGCCGGCGAGAGGCTCGCAAGAAAGCTTCAGTAGAAGCCCGACTGAAGgCTGCCATCCAGTCCCAGTTGGACGGGGTCCGCACAGGGCTCAGTCAGCTCCATAATGCCCTGCGGGATGTCAAGGACATACAGAACTCCCTGGCAGACGTCAGTAAGGACTGGAGGCAGAGTATTAACACGATTGAGAACCTCAAAGATGTGAAAGACGCCGTTGTCCAGCACAGTCAGCTTGCCTCAGCTGTCGAGAATTTAAAGAATATCTTCTCAGTGCCTGAGATAGTGGCAGACACCCAGGTGCTGATTGAGCAGGCTGAGCTGCTGGAGGCCCACCGTAAACTGATGGATCTGGAATGCTCGCGGGACGACCTCATGTATGAGCAGTACCGAATGGACAGCAAAAACACTCACGACATGAACCTGATCCGCAACTACTTTGGCGCGGTGCAGGGCCTGTCTGACGACCTGGCCAAGCAGCTGTGGATGGTGCTGCAGCGCGCCATGGGCACGGTGCGCCGCGACCCCACCATGCTGGTTTCCGTGGTGCGCATCATTGAGCGTGAGGAGAAGATTGACCGGCGCATGCTGGACCGCAAGAAGCAGATGGGCTTTATCCCCCCAAGTCGGCCCAAGAGCTGGAAAGAGAAGATGTTTGAGGTGCTGGAGGGCACGGTCACCACACGCATCGAGGGCAGCCAGTCGGTGACGCGAGAGGCAGACAAGATGTGGATGGTGAGGCTCTTGGAGATCACCAGGAAGTACGTGCTGGACGACCTGATTGTGGTGAAGAACCTGATGGTGCAGTGCTTCCCGCCACACTACAACACCTTTGACAGGTTTTTAAAGCTGTACCACAACGCCGTGTCCATGCGGGTGCAGGAGCTGGCTGCAGAAGACCTGGAGGCCAACGAGATCGTGTCCCTCCTCACCTGGGTCCTCAACACATACAAAAGtGTGGAGATGATGGGTCACCCAGATCTGGTGACAGAGTATGACATCCACCTGATGGATCCTCTGCTACCTCAGAAGGTGGTGGATGAGCTTCTCAGCAAATACGTCCAGACCTTCACTTCTAACATCACTGGCTGGCTTCGCAAGGCTCTGGAGACAGACAAGAAGGACTGGTTTAAAGAGACAGAACCAGAGGCGGATCAAGATGGATACTACCAGACCACCCTCCCTGCCATCGTCTTCCAAATGTTTGAGCAGAATCTCCAAGTGGCAGCCCAGATCGACGAGACCTTCAAAGAGGAGGTCCTGAAGCTCTgtttaaaacaaatgaattcattCCTCATCAGATACAGGGAAGAGGCGATCGCCTACAAGGAGGACCACTTGAGAGACCGGCAGCTCCCTCAGTGCTACGTCCAATACATGATCGCCATTATAAACAACTGTCATACATTCAAGGAGTCTATTAACAGTCTAAAGAAGAAATACTTAAAATGTACGGAGCCCACCCAGAATGATGCTGCCATCGAGAGGACCCTGAACGATGTGGCCAAAGATGGATGCCAGTTTCTACTGGATGAAGTTTTCCTGGATTTGGAGCATCATCTCAGTGAGTTGCTGACCCGGAAGTGGTTGACGGGGACCCATGCAGTGGACACCATCTGTGTGACCGTCGAGGATTACTTCAACGACTTCGCCAAGATCAAGAAGCCTTTCAATACGGAGATGACCAGCGAGGCTCATCGCAGGGTGGTGGTGGAGTATATCAAGGCAGTGATGCAGAAACGGATCACCTTCAAGAACgcagatgagaggagggagggagcggaCAGGATGATTAAAGAGGCTGAGCAGTTCAAGTTCCTCTTCAGGAAACTCACTGCTGGTGAGGAGACTGATCGGCTGTGCGACGCCATCGCTGCTATAGCTGAGGTGTTTAAACTCACAGACCCCACCCTGCTTTACCTGGAGGTCTCCACGCTGGTGTCCAAATACCCTGACATCAGGGAAGAGCACATCGTGGCCTTACTAGCGGTGAGAGGGGACGCTAGCCGAGAAATGAAGCAGATGATCATTGAGACGCTGAACCAGAACAAGCCTTCCTATGCCGGCAACACCCAGCCCATCTTCAAGGACATCACGATCCCCACCGTGACCATGACCTCCATGTCCTCCTCTATGGCCGCCACTGCCAACAAACTGCTGAAATAAATAACTAGattctggagagagatggagacacctGGGTCCTATTCATTAATGCATTATTCATTAATGCACAAGGTTCAATTGTTCATTattgcagggtttcccaaactcggtcctgggaaACTCTGCCTTATTGGACACGTTTggatagtccctccctgttttagtGCCTAGTGATTACGACCCCggcacaaaaaaaacacacttcAAAAAATCAtgatttttcttttcttttgcaCTTTTGAAACCTATTCCACAGACCTCCGATGAAAGGCTTGGACTGTAGTCCTTGAGGATCTGTAAGCGTATGATACTTGATGAATGAACCATCAAACACTACCAAGTGGTTTTGTTACTGAAATAAGACCTTGCTCACACCACCCACCCTCCTTGCTTGCCTTATACAATTAACAGTTTGAAATTGTTTCTTAAACTTTTTCAGTGTGTGATGCTGAATGTCTGTCAGAAAATCTATTAAAGAAATCCTTTCCCCTGTC

Function

NR:

description
exocyst complex component 3-like

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
K06110 EXOC3, SEC6; exocyst complex component 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589386.2 True 3233 mRNA 0.50 13 19015141 19025982

Neighbor

gene id symbol gene type direction distance location
LOC118944847 NA coding downstream 49414 18958044 ~ 18966479 (-)
LOC110508673 LOC106599588 coding downstream 67953 18945248 ~ 18947188 (-)
LOC110508176 LOC106599291 coding downstream 88128 18880690 ~ 18927013 (-)
LOC110508671 LOC106599289 coding downstream 135818 18864839 ~ 18879323 (-)
LOC110508670 LOC106599287 coding downstream 166002 18838313 ~ 18849139 (-)
LOC118944890 LOC106599299 coding upstream 1386 19027368 ~ 19028856 (-)
LOC110508177 LOC106599299 coding upstream 3317 19029299 ~ 19067614 (-)
LOC110508178 LOC106569286 coding upstream 43053 19069035 ~ 19070878 (-)
LOC110508677 LOC106599302 coding upstream 55556 19081538 ~ 19095065 (-)
LOC110508678 LOC105024244 coding upstream 90100 19116082 ~ 19185326 (-)
G2113520 LOC106599295 non-coding downstream 3506 19007232 ~ 19011635 (-)
G2113519 NA non-coding downstream 8745 19006195 ~ 19006396 (-)
G2113518 NA non-coding downstream 10397 19004495 ~ 19004744 (-)
G2113513 NA non-coding downstream 17632 18997277 ~ 18997509 (-)
G2113492 NA non-coding downstream 29976 18984962 ~ 18985165 (-)
G2113770 NA non-coding upstream 380 19026362 ~ 19027287 (-)
G2113781 NA non-coding upstream 10710 19036692 ~ 19037180 (-)
G2113782 NA non-coding upstream 12053 19038035 ~ 19038270 (-)
G2113787 NA non-coding upstream 18472 19044454 ~ 19045152 (-)
G2113769 NA non-coding upstream 24490 19050472 ~ 19051048 (-)
G2113320 LOC100194703 other downstream 229819 18784897 ~ 18785322 (-)
G2113287 NA other downstream 272857 18741918 ~ 18742284 (-)
G2113211 NA other downstream 355413 18657553 ~ 18659728 (-)
G2115838 NA other upstream 1833158 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2844703 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2847234 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2916999 21942981 ~ 21948557 (-)

Expression


Co-expression Network