LOC118944890 (LOC106599299)


Basic Information

Item Value
gene id LOC118944890
gene name LOC106599299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19027368 ~ 19028856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967111.1
ATACATTTTGTCACGGTTCCCAGTGACAAGAGACATTGTTCCTCCAGAGGCTCATATGACAGCAGTGACTTACTGTTTCTGAATTGGTCCAGCAGCACTACCAGAGAACCCTGCCACTACACCCCATGGACACCCCTCTCCAAAGACGGCACCAGGTACAAGAACGATAGCTACTACACCCAGGAGGAGCCCCTGAACTTCTGCCTATCCTCCATGAGTGGTGGGCCCAAACCTCAGAGCATGGATCATCCATGGGACATCCGCACAGGGTCCGCCATGCGAAAGGGCCCCAGCGGGACCTACACACCAGGCAGACAAAGCAAGTACAATCACCTGGGGAAGACTAGATCCTACAGGATATCTCCAGGATATCACGCTAACAGACAGGAAGCATCTCAGAACAAGCTGTACGGAGGCCTCCACAGCCCTGAGGTGGAGAGCTACTGCGAAGATGGCATGAAGACAGACAACAGGTACATGGGCGGCCATCTTGACTGTTACAATGGCATGGTGTTGCCTGAGACGGCCATAAAAACAGAGCAGGACTCTGACTCAGAAAACGGTTGCAATATCTACGGCATGCCCCAAAATAGAGCCTGGGTGGGGAACGAAAAGCGCTACATGGGCTACTCAGAAGAACCACAGGTGAAGTCAGAAGCTGACTACTGTGAACAATACACCACCTGCCAAAAGAACAAGACCAACATGAGCCCAATGCTCAATGGACACCATAAATACTTATATACAGCGGGGAACAGGGCTCAGAAGGATCATAGGATACCACACTCAGACTCTCTGTGTAGCAGTCAGGGAGAAAACTGTATGGACATCAGTGTATATGGCTACATGGAGCAAGACAACAAACTGAACTACGAGTTCAGGAATCACCTGGTCCACGCTATAAAGAGGGAACCCATGGACTCACCTCCATGGTCTGACAGTGGCCATGACATTAGCCAAATACCCATGCAGAGAAATATGATTCCCAACTCATCAATGAATGCTATTGTATACAAACCAAACCCATATATCTACATGCAATGAGCTCAAGGGACAATCTTAAAAACCATCTGGACTCCACCTTGCTTCTTTATTGTATTGATTCTTAAAATAGCAGGGTGGGTTTATACTCAACTCAGGTAATCAACAGTGTTACAAAGCAGAAAGATATGGAAGCAATGGAGAGATGTTTTTATATGACATGAATATGACTTGCAGAACCTACTGCAATTCACATGAGttctacatttgttttttttaacacatTTCATAACTTAACGTTTTTAAACCAAGCCATGTCACCCGTCATGTCAAATTAACTGTATTTCTATTCAATGCATTTTACAGCAAATGGAACAGAAAATACATGCATTGATTAATTAAATTGGGGGCTCCTGAGTTgcgcagcggtctatggcactgcattgcagttctagaggcatcactacagaccctggttcgatcccgggctgtatcacaaccggctgtg

Function

NR:

description
aryl hydrocarbon receptor repressor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967111.1 True 1489 mRNA 0.46 1 19027368 19028856

Neighbor

gene id symbol gene type direction distance location
LOC110508676 LOC106599297 coding downstream 1386 19015141 ~ 19025982 (-)
LOC118944847 NA coding downstream 61641 18958044 ~ 18966479 (-)
LOC110508673 LOC106599588 coding downstream 80180 18945248 ~ 18947188 (-)
LOC110508176 LOC106599291 coding downstream 100355 18880690 ~ 18927013 (-)
LOC110508671 LOC106599289 coding downstream 148045 18864839 ~ 18879323 (-)
LOC110508177 LOC106599299 coding upstream 443 19029299 ~ 19067614 (-)
LOC110508178 LOC106569286 coding upstream 40179 19069035 ~ 19070878 (-)
LOC110508677 LOC106599302 coding upstream 52682 19081538 ~ 19095065 (-)
LOC110508678 LOC105024244 coding upstream 87226 19116082 ~ 19185326 (-)
sc61g NA coding upstream 164952 19193808 ~ 19197058 (-)
G2113770 NA non-coding downstream 81 19026362 ~ 19027287 (-)
G2113520 LOC106599295 non-coding downstream 15733 19007232 ~ 19011635 (-)
G2113519 NA non-coding downstream 20972 19006195 ~ 19006396 (-)
G2113518 NA non-coding downstream 22624 19004495 ~ 19004744 (-)
G2113513 NA non-coding downstream 29859 18997277 ~ 18997509 (-)
G2113781 NA non-coding upstream 7836 19036692 ~ 19037180 (-)
G2113782 NA non-coding upstream 9179 19038035 ~ 19038270 (-)
G2113787 NA non-coding upstream 15598 19044454 ~ 19045152 (-)
G2113769 NA non-coding upstream 21616 19050472 ~ 19051048 (-)
G2113793 NA non-coding upstream 27776 19056632 ~ 19057097 (-)
G2113320 LOC100194703 other downstream 242046 18784897 ~ 18785322 (-)
G2113287 NA other downstream 285084 18741918 ~ 18742284 (-)
G2113211 NA other downstream 367640 18657553 ~ 18659728 (-)
G2115838 NA other upstream 1830284 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2841829 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2844360 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2914125 21942981 ~ 21948557 (-)

Expression


Co-expression Network