LOC110508677 (LOC106599302)


Basic Information

Item Value
gene id LOC110508677
gene name LOC106599302
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19081538 ~ 19095065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589387.2
GCCAGAGCCGGACCCATAAAACCATATTAAAATTACAGGATGTTTTAGAATATGACGACACAAATTGTTTTCTGTTGTAGTAGGGGTATACATCATCATCAATCAGTTTTCCTTAGAAATTTTACAATCTCACAAACCAGGCTGTGACATGGAACAAAATGGCCTTATTATCCGCCGACCGTATACGGAACGTTAAATTCCACACTCAAATTCCATGGGACATCTTTCTGTGAACGCAGATTTATAAAGTGTTATTTCTATACACTGCCGCAGCTATTGTTGTGGCAGTGAAAGTAAATCATTTAGAGGGAAGGGGGATTTGTTTTAGAAAGGGGATTTTCCAATACTCTACTCGGATTATAAACGTAATATTTGTGCCTAATTTGCACTGTTTTATTTGATTTGGAGCCAAGAACGAGCACTACTGCTACTGGACGATGgtcTCTTGGCAGGGTGCTCCTGATTGCTACTTGAAGGGGGTCTTCCAATATTGTCTGCCACTCTGAAGAGAAGACCCCACCTTGTCTTGTGTTGGATTGTGGCCTCTCTCTTCATCACCTTATGGAGGAGTAGCTCTTGACAGGTTCATTACACACGATAAAACAAAACGTGACACAGCAACTGATAAGAGAGCAACAACAAGCAAAGAGACAATGTCCTCCAACAGAAGCCAGAACCCTCATGGGCTCAAACAGATTGGCCTAGACCAGATCTGGGATGACCTGCGAGCAGGAATACAGCAGGTGTACACCAGACAGAGCATGGCCAAAGCACGATACATGGAACTCTACACACATGTTTATAACTACTGTACCAGTGTGCACCAGTCTAATCAGGCCCGTGGGACAGGGCCCCCTCCATCCAAACCCTCCAAAAAGGCCCCCACCCCAGGAGGGGCCCAGTTTGTGGGCCTGGAGCTCTACAAGAGACTCAAGGAATTCCTCAAGAACTACCTGACCAACCTGCTCAAGGATGGAGAAGACCTGATGGATGAGAGTGTATTAAAGTTCTACACACAGCAGTGGGAAGACTACAGATTCTCCAGCAAAGTGCTGAATGGTATCTGTGCCTACCTCAACCGGCACTGGGTCCGCCGCGAGTGTGATGAGGGGCGCAAAGGGATCTATGAAATCTACTCCctCGCTTTGGTGACATGGAGGGAATGCCTTTTCAGACCTTTGAATAAACAAGTCACAAATGCTGTATTGAAGCTCATCGAGAAGGAACGAAACGGAGAGACCATCAACACCAGGCTTATCAGTGGAGTCGTCCAATCCTACGTTGAGTTGGGCCTCAATGAGGATGATGCCTTTGCCAAAGGCCCCACATTGTCGGTCTACAAAGAGTACTTTGAGACTCAGTTCTTGGCGGACACCGAGCGCTTCTACACACGAGAGAGCACAGAGTTCCTGCAACAAAACCCTGTTACTGAGTACATGAAGAAGgcGGAGGCACGTCTTTTGGAGGAGCAGCGGAGGGTGCAGGTGTACCTCCATGAGAGCACGCAGGACGAGTTGGCCCGCAAGTGTGAGCAGGTGCTCATCGAGAAGCACCTGGAGATTTTCCACACAGAGTTCCAGAATCTTCTGGACGCTGACAAAAATGAAGACCTTGGGCGGATGTACAATTTGGTGTCCCGGATCACTGATGGGTTGGGAGAGCTGAAGAAACTCCTGGAGACGCACATATACAACCAGGGCCTTGCTGCTATAGAGAAGTGTGGAGAAGCGGCTCTCAATGATCCCAAAATGTATGTCCAGACCATCTTAGACGTCCACAAAAAGTATAATGCCTTAGTAATGTCAGCGTTCAACAACGACGCTGGTTTTGTTGCTGCTCTGGACAAGGCCTGTGGACGCTTCATAAACAACAATGCTGTGACCAAGATGGTGCAGTCGTCCAGCAAATCTCCAGAGCTGCTGGCTAGATACTGTGACTCTCTGTTGAAGAAGAGCTCAAAGAACCCAGAGGAGGCAGAGCTGGAAGACACACTAAACCAAGTGATGGTGGTCTTTAAGTACATAGAGGACAAAGATGTGTTCCAGAAGTTCTACGCCAAGATGCTGGCTAAGCGGTTAGTCCATCAGAACAGCGCCAGTGACGATGCTGAAGCCAGTATGATCTCCAAACTGAAGCAAGCATGCGGCTTCGAGTACACCTCTAAACTCCAGCGCATGTTCCAGGACATCGGCGTCAGCAAAGACCTAAATGAACAATTCAAAAAGCACCTCACAAACTCTGAGCCTTTGGACTTGGACTTCAGCATCCAGGTCCTCAGTTCTGGTTCCTGGCCCTTCCAGCAGTCCTGTACATTCGCTTTGCCCTCTGAGCTGGAGAGGAGTTACCAAAGGTTCACGGCCTTCTACGCCAGCAGACACAGCGGGCGCAAGCTGACCTGGCTCTACCACCTGTCCAAAGGAGAGCTGGTCACCAACTGCTTTAAGAACAGATACACACTCCAGgCTTCTACCTTCCAGATGGCCAtcttactacaatacaacactgaggATGTCTACACAGTGCAGCAGCTCACTGACAGCACGCAGATCAAGATAGACATTTTGGTGCAAGTCTTGCAAATCTTGTTGAAGTCCAAATTGCTGGTCCTGGAGGATGAGAATGCAAATGTGGATGAAGTGGAGTTCAAACCAGACACCTTAATAAAACTCTTCCTGGGATACAAAAACAAGAAACTTCGGGTGAACATTAACGTGCCAATGAAGACAGAGCAGAAGCAGGAGCAGGAAACAACTCACAAGAacatagaggaggacaggaaaCTGCTAATACAGGCAGCCATCGTGAGAATCATGAAGATGCGTAAAGTGCTGAAACATCAGCAGCTCCTGGCAGAGGTTCTGAACCAGCTGTCATCCAGGTTTAAACCAAGAGTCCCCGTCATCAAGAAATGCATCGACATCCTGATAGAGAAGGAGTACCTGGAGCGTGTCGATGGAGAGAAAGACACGTACAGCTACTTGGCTTAAAACCTTTTCATTGTTCTCCACCCTTCCTCCTTTCTTTTTTTAAGTTGTTTCTTGATTAATAAACATCATTCTTTTTGACATTTGGCCAATGTTGTCAGGAATGCGAGCACAGAAGGAGAAAAATAAAAACCATAAAGAAGAAAGAAAAGTCTTCTGAATCATCAAGGTGGTTGCTAAAGCTGGACTTCCCTTTAAACTCGGAGATTATGGGATAGCTGCTCGCCCAGTGTTTGTTTGAAGATCCCATCTGAACTGCTCAGGTTCGACAGATACATTTTGATATGTAAATATGGACAGAGACCTTTACCCCTTTATCTTAACATTacaaaataaacaatcaaaaccCTTCACACCGAGGGTTGCATGCTACTGCCTATCTGCATTTAAGGAGCAAAAAGACGTAATAGGGGAGAAGCTATTGAGACACTGCTGCGTTACGTGGCAGGAGAACGTGTTTTAAAAAAGATGAGCAATTTTAGCTGCACTTCCAGAGCGCGATCTGTGTGTTTGAAAAAGGCCCTTAGAAGTGTAATCTGCATTGTTACCTGCTACCAGAAAACCATTTGTATAGTGtggttcacttttttttttttatgtggtaAATAAAAGTTAAAGGTTTCTGTATGCCCTCTGATGGTCTTTATTCCCTCAAAACCGATGTAAAAGTTTGGATGATATGTTAGACATTAATGGATATATACTGTGCCCTGAATTTATGCTCTGTGCTCAGGCTGTCACTTTGGGGGCCAGGGCCATCATGTAATTGGGGGTGCAGGAATGAAAAATGTCACCTGGATATTTTAAGTCAGTGCTGGTTACTTGACATTACAATCCCGAAATGACATACTTAGCTGTTCATCACTAGTCATTTGTAAACTGTTAAACTCAAATAAAGTTTGTCAACAGGA

Function

NR:

description
cullin-1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K03347 CUL1, CDC53; cullin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589387.2 True 3895 mRNA 0.46 22 19081538 19095065

Neighbor

gene id symbol gene type direction distance location
LOC110508178 LOC106569286 coding downstream 10660 19069035 ~ 19070878 (-)
LOC110508177 LOC106599299 coding downstream 13924 19029299 ~ 19067614 (-)
LOC118944890 LOC106599299 coding downstream 52682 19027368 ~ 19028856 (-)
LOC110508676 LOC106599297 coding downstream 55556 19015141 ~ 19025982 (-)
LOC118944847 NA coding downstream 115811 18958044 ~ 18966479 (-)
LOC110508678 LOC105024244 coding upstream 21017 19116082 ~ 19185326 (-)
sc61g NA coding upstream 98743 19193808 ~ 19197058 (-)
pkia NA coding upstream 114134 19209199 ~ 19255933 (-)
LOC110508682 LOC106599592 coding upstream 238002 19333067 ~ 19341851 (-)
LOC110508683 LOC106599309 coding upstream 252241 19347306 ~ 19359854 (-)
G2113802 NA non-coding downstream 17250 19063997 ~ 19064288 (-)
G2113793 NA non-coding downstream 24441 19056632 ~ 19057097 (-)
G2113769 NA non-coding downstream 30490 19050472 ~ 19051048 (-)
G2113787 NA non-coding downstream 36386 19044454 ~ 19045152 (-)
G2113782 NA non-coding downstream 43268 19038035 ~ 19038270 (-)
G2113823 NA non-coding upstream 10222 19105287 ~ 19105610 (-)
G2113871 NA non-coding upstream 108992 19204057 ~ 19204256 (-)
G2113872 NA non-coding upstream 109779 19204844 ~ 19205108 (-)
G2113873 NA non-coding upstream 110124 19205189 ~ 19205400 (-)
G2113520 LOC106599295 other downstream 71873 19007232 ~ 19011635 (-)
G2113320 LOC100194703 other downstream 296216 18784897 ~ 18785322 (-)
G2113287 NA other downstream 339254 18741918 ~ 18742284 (-)
G2113211 NA other downstream 421810 18657553 ~ 18659728 (-)
G2115838 NA other upstream 1764075 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2775620 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2778151 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2847916 21942981 ~ 21948557 (-)

Expression


Co-expression Network