sc61g


Basic Information

Item Value
gene id sc61g
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19193808 ~ 19197058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588582.2
TAGAATTACCCTATCACATTAATTTACATATCTATTTTTGTGTTGTTAATAGTTTAGAATGTTCATCAAGACACGCAGTGATCAAAACCTTTCCAACATGGACCAAGTAATGCAATTTGTGGAGCCCAGCCGGCAGTTTGTGAAGGACTCAATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGaATTCTCAAAGATTGCAATGGCCACAGCAATAGGTTTTGCTATAATGGGTTTCATTGGTTTCTTTGTCAAACTCATCCACATCCCCATCAACAACATCATTGTTGGTGGTTGAATATCTCTCcggactgactgactagctgcaacaagacatgggttcaaatgccgagaagtgttttttttcttctttgtatATTATTATCTTCAGTTCATATTTGTTTGCTCTGTAAATAAATCTGGCTTAGTAAGAATTCAAA
>NM_001160688.2
AGAACATACGTGGCCTTTACATAGAGCAGTCACATAAATAGGTCTTCAGAAGAGAACTCCGGATCAAAACCTTTCCAACATGGACCAAGTAATGCAATTTGTGGAGCCCAGCCGGCAGTTTGTGAAGGACTCAATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGaATTCTCAAAGATTGCAATGGCCACAGCAATAGGTTTTGCTATAATGGGTTTCATTGGTTTCTTTGTCAAACTCATCCACATCCCCATCAACAACATCATTGTTGGTGGTTGAATATCTCTCcggactgactgactagctgcaacaagacatgggttcaaatgccgagaagtgttttttttcttctttgtatATTATTATCTTCAGTTCATATTTGTTTGCTCTGTAAATAAATCTGGCTTAGTAAGAATTC
>TU2417266
CGACGTCGACTTTTAGAACATACGTGGCCTTTACATAGAGCAGTCACATAAATAGGTCTTCAGAAGAGAACTCCGGATCAAAACCTTTCCAACATGGACCAAGTAATGCAATTTGTGGAGCCCAGCCGGCAGTTTGTGAAGGACTCAATAAGGCTTGTGAAGAGGTGTACCAAGCCAGACAGAAAAGaATTCTCAAAGATTGCAATGGCCACAGCAATAGGTTTTGCTATAATGGGTTTCATTGGTTTCTTTGTCAAACTCATCCACATCCCCATCAACAACATCATTGTTGGTGGTTGAATATCTCTCcggactgactgactagctgcaacaagacatgggttcaaatgccgagaagtgttttttttcttctttgtatATTATTATCTTCAGTTCATATTTGTTTGCTCTGTAAATAAATCTGGCTTAGTAAGAATTCAAA

Function

NR:

description
transport protein Sec61 subunit gamma

GO:

id name namespace
GO:0071806 protein transmembrane transport biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006412 translation biological_process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588582.2 False 446 mRNA 0.37 4 19193808 19196973
NM_001160688.2 False 425 mRNA 0.40 4 19193811 19197044
TU2417266 True 442 lncRNA 0.40 4 19193808 19197058

Neighbor

gene id symbol gene type direction distance location
LOC110508678 LOC105024244 coding downstream 8482 19116082 ~ 19185326 (-)
LOC110508677 LOC106599302 coding downstream 98743 19081538 ~ 19095065 (-)
LOC110508178 LOC106569286 coding downstream 122930 19069035 ~ 19070878 (-)
LOC110508177 LOC106599299 coding downstream 126194 19029299 ~ 19067614 (-)
LOC118944890 LOC106599299 coding downstream 164952 19027368 ~ 19028856 (-)
pkia NA coding upstream 12155 19209199 ~ 19255933 (-)
LOC110508682 LOC106599592 coding upstream 136023 19333067 ~ 19341851 (-)
LOC110508683 LOC106599309 coding upstream 150262 19347306 ~ 19359854 (-)
atpsckmt LOC106599314 coding upstream 162473 19359517 ~ 19361133 (-)
LOC110508684 LOC106599312 coding upstream 164016 19361060 ~ 19367850 (-)
G2113823 NA non-coding downstream 88198 19105287 ~ 19105610 (-)
G2113802 NA non-coding downstream 129520 19063997 ~ 19064288 (-)
G2113793 NA non-coding downstream 136711 19056632 ~ 19057097 (-)
G2113769 NA non-coding downstream 142760 19050472 ~ 19051048 (-)
G2113787 NA non-coding downstream 148656 19044454 ~ 19045152 (-)
G2113871 NA non-coding upstream 7013 19204057 ~ 19204256 (-)
G2113872 NA non-coding upstream 7800 19204844 ~ 19205108 (-)
G2113873 NA non-coding upstream 8145 19205189 ~ 19205400 (-)
G2113953 LOC106599307 non-coding upstream 124597 19321641 ~ 19324735 (-)
G2113954 NA non-coding upstream 129028 19326072 ~ 19326720 (-)
G2113520 LOC106599295 other downstream 184143 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 227329 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 408486 18784897 ~ 18785322 (-)
G2113287 NA other downstream 451524 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1662096 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2673641 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2676172 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2745937 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3397489 22594533 ~ 22607806 (-)

Expression


Co-expression Network