LOC110508682 (LOC106599592)


Basic Information

Item Value
gene id LOC110508682
gene name LOC106599592
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19333067 ~ 19341851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589398.2
ATGGTGCAGATCACAGAGGAcccaggtggaggtggagggaccTTGTTAAATGTTCAGCAGAATGGGATTGTCAGGGGTCGCAAAGATGAGGAGTCGTCTATATTGTCGGAGACGGTCGCAGGCAATGAAAATGAGGATCCTAATGAGGGAGACAATGAGGAAAGCAACTATTACGACGATGACGACGATGATGTCTATCAGGAATTTGAAGAGTTTGACTTTGACACATTGCCAGATCTGCCGAAGGATACCAAGAGTATTGACTCTGATAACTCCTTCTATCCACCCGATGACTCTCTCAAATACAGGACTCCCAGCCCAAACACCCCCGAACCTCTGTCCTTCTTCAAGGCCTGCTCCAATAACAATTCCATCATAGTGAAGATTATGATAAGGCAAGGGGTGACAAAGGAGGAAGTGAATGAAACAGACAAGAACAACAGAAATGGGCTGATAGTAGCCTGTTACATGGGCTGGGTGGATGTGGTCATAGCGCTTTCTCAGTGTCCCCATATCGATGTCAACTGGCAAGACAACGAGGGGAATACAGCCCTCATGACAGCTGCTCAAGCAGGCCACATTATGATATCCAGCTACTTGATCAACTACTTCCCCAACCTGGACCTAGAGCGTAGGAACTGCCATGGATTCACCGCTTTGATGAAGGCAGCCATGCAAGGGAGGGCAGATGTTGTTTGTTTGCTCATGATGTCAGGAGCGGACGTGGAGGCGAGGGACTACAGCCGCAAGATGACCTCCAGGGAGTGGGCTTTGTTCACATGTCGCTATGAGACGGGCTATCTGATGATGCGTCTGATGGCCCAGCCATGCGCCCAGCAGTTCTGTGACTCCTACAAGCTGGAATGGCCCATGCTGCAGGAACTAGTGGCCCAACGCCAGGAGTCCAAGAGCTGCTGGCAGAAGGTGGCAGACAAGGTCTGCTGCAGGTTCTCTCTCCGCATGAAGACGGACCCCGTGGACGATGGTGTGATGGACCACATGGTACGCATCACTACCGCTCTGTCCAGCCCATTGATCGCCACCGCCTGCCACACTGTGGCCCCAAGAAGTCCCCCCTGCATCGGGAAGCGGCGCTATGCCGTGCCAGAGATCCTCAGGAAGCAGCGAGTGGACGAACTGAAGTGCCTGGGCCCCGAgcacttcaacaacaacaagaagctGTTCAATAACTCCCGGGTGCAGTTGGTTCCTAAGAAGAGGGACCGGAGGGCCAGCCTGCAGACCCAAATGTTGCAAGAGGTTGCGGTGGCTGGTACTTCGGCTCTGAGGCGCACCAGCTTGCTGCCCCTGAACATGATGAGGAGGAGTAGTGTCAGGCCGGGCATTGTGGTCCCCAAGGTGAGGCTGTGCAAGGTCCCCTCATGGCCCAACCCTGAAAAGAGAAAAAATAGCAAGGACCCCGAGCTCCTTCAGCTCCCCAAGTGGAGGTACAAAGAGgccaaggaggagaggaggaggcaagaggaagaggggaagaagagACGTTTACCCACAGTGAGGATGCGCTGAAAGACTTGAGCTACGAGGAGAGGTCAAATTGCTTTTCAAGAGCCTTGGGGTGCGAGCTAACCTTTAACTGTAATTGGTTCTGAACTGAGGAGATGAAGTTATCACCAGCGTTTTAGATTTTAAAGACTGTGCCACTTGATTCAGCTGTAGCCATGGAGCACTATCTTTTCCTGTCCTAGATTGGTTACTCTGTTTTCTGGCTTTTGACAGTAATGGGGAAGGAATACTTGGCTTGAACTGTGTACTCATTGTGAGGAATTCATAATTGAACTTTTATGCAGATGTATTTTTGTATGCATTCTTCCATTTTCTTCAGATTATGCATTTCTCCATTCAATCTGCATTTCTTCAGATTATGACTGTTTGATATCTCCATTGTAAAAAGGATAACTCAAACACATACAATACTTTGCACGTTGTTTATTGTGTCAATGTTTTGGTCAGAGACCTTTTCATCTCcaccaaaaaaatgtatgtttgtcTGGTGGATATTCTCAAAGCAGATAATACACAAATCAGTTGGAtgtatgtacaggtaactgccaaaataaagtgtcttaatagggcgttgggccacca

Function

NR:

description
ankyrin repeat domain-containing protein 33B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589398.2 True 2109 mRNA 0.49 4 19333067 19341851

Neighbor

gene id symbol gene type direction distance location
pkia NA coding downstream 77134 19209199 ~ 19255933 (-)
sc61g NA coding downstream 136023 19193808 ~ 19197058 (-)
LOC110508678 LOC105024244 coding downstream 147741 19116082 ~ 19185326 (-)
LOC110508677 LOC106599302 coding downstream 238002 19081538 ~ 19095065 (-)
LOC110508178 LOC106569286 coding downstream 262189 19069035 ~ 19070878 (-)
LOC110508683 LOC106599309 coding upstream 5455 19347306 ~ 19359854 (-)
atpsckmt LOC106599314 coding upstream 17666 19359517 ~ 19361133 (-)
LOC110508684 LOC106599312 coding upstream 19209 19361060 ~ 19367850 (-)
socs6 socs6 coding upstream 49513 19391364 ~ 19394722 (-)
crispld1b LOC106599318 coding upstream 73853 19415704 ~ 19426343 (-)
G2113954 NA non-coding downstream 6347 19326072 ~ 19326720 (-)
G2113953 LOC106599307 non-coding downstream 8332 19321641 ~ 19324735 (-)
G2113873 NA non-coding downstream 127667 19205189 ~ 19205400 (-)
G2113872 NA non-coding downstream 127959 19204844 ~ 19205108 (-)
G2113871 NA non-coding downstream 128811 19204057 ~ 19204256 (-)
G2113978 NA non-coding upstream 54862 19396713 ~ 19397180 (-)
G2113982 NA non-coding upstream 61597 19403448 ~ 19403721 (-)
G2113988 NA non-coding upstream 65270 19407121 ~ 19407379 (-)
G2114754 NA non-coding upstream 132016 19473867 ~ 19474185 (-)
G2114757 NA non-coding upstream 133980 19475831 ~ 19476031 (-)
G2113520 LOC106599295 other downstream 323402 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 366588 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 547745 18784897 ~ 18785322 (-)
G2113287 NA other downstream 590783 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1517289 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2528834 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2531365 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2601130 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3252682 22594533 ~ 22607806 (-)

Expression


Co-expression Network