LOC110508683 (LOC106599309)


Basic Information

Item Value
gene id LOC110508683
gene name LOC106599309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19347306 ~ 19359854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589399.2
AGTTGCTGTGCATAGCAGTTTTTACCGTAGCTAGCCTAGCCCCCGGAGTGCCTGATAAAATTGCTACATTGTATCCCCACGGGGAATCAAATAGTGAAGTTACATTGTAACCAGTCATCGAATCGAACGTCATTCTGAGATGTGTTTTTTTAGTTCGCTGGCTGCTAGGCTTTTCACCAACAAGCCAGGCGGTGTTGTGTGTTGACTGAAAAGAGGACAGTGTGCGTCAGCATTCAAGATGGACACCGCCGAGGAAGGGGATATATGCCGGGTCTGCCGGTCTGAAGGAACCCAGGACAAGCCACTATATCACCCCTGTGTTTGCACAGGAAGTATAAAATTCATCCATCAAGAATGCTTGGTACAATGGCTAAAACACAGCAGAAAAGAATACTGTGAGTTATGCAAACACAGATTTGCTTTTACGCCAATCTATTCTCCAGACATGCCTTCCCGACTGCCTGTTCAGGACATATTTGCGGGGCTGGTGACAAGTGTAGGCACAGCTATTAGATACTGGTTTCACTACACACTAGTTGCCTTTGCTTGGCTGGGAGTCGTTCCTCTCACAGCATGTCGCATCTACAAGTGTCTGTTTACCGGCTCTGTGAGCTCACTCCTTACCCTGCCATTAGATATGCTTTCTACAGAGAACTTGATGGCGGACTGCTTGCAGGGTTGTTTTGTGGTGACGTGTACACTCTGCGCCTTCATCAGTCTGGTGTGGCTGCGGGAGCAGATTGTTCATGGTGGCGCCCCCCAgtggctggagcagaatcagcAGCAGCAGCCACAACATGCACCAGCTCCACAACTTAATGAGCAGGGTCCTGGGCAGGGGGTGGGTGAGAACCagcctgctcctgctgctgctgcgcCCCTGGCGGACAATGGTCCAGCGGCTGAGGTCCCTGACATCCAGGTGGACCCGGTAGAGGACATGGAGCTGGAGGacgaggctggggctgaggatgTAGGGGACGCCAACAATGGTGCACAAGATGACATGAATTGGAATGCCCTGGAATGGGACCGGGCAGCAGAGGAGCTAACATGGGAGAGGATGCTCGGTCTTGATGGCTCCTTGGTTTTCCTGGAGCATGTCTTCTGGGTGGTCTCACTAAACACACTCTTCATTTTGGTGTTCGCTTTTTGTCCGTATCATATTGGACATTTCTCAGTTGTGGGTCTTGGCTTTGAAAATAATGTGCAGGCCTCCCACTTCGAAGGCCTCATCACCACCATCGTAGGCTACATCTTCCTGGCCATGACATTAATACTGTGCCATGGATTGGCAGCGTTGGTGAGATTCCAAAGATCCAGACACCTTTTAGGAGTGTGCTACATTGTTGTCAAGGTATCCCTGCTGGTAGTTGTGGAGATCGGTGTGTTCCCTGTCATCTGTGGCTGGTGGCTCGACATCTGCTCACTGGAGATGTTTGATGCCTCTCTGAAGGACAGAGAGCTGAGTTTTGAGTCTGCTCCCGGCACCACCATGTTCCTCCACTGGCTTGTAGGGATGGTCTACGTCTTCTACTTTGCCTCGTTCATCCTCTTACTGCGAGAGGTGCTGAGACCTGGTGTTTTATGGTTTCTCAGAAACCTGAACGATCCTGATTTTAATCCTGTCCAAGAAATGATTCACCTGCCAATATACAGACATCTCAGAAGATTAATTTTATCAGTGGTGGTGTTTGGCTCCATAGTTTTACTAATGTTGTGGCTTCCCATAAGGACGATCAAATTCATCCTCCCAGCCTTCCTCCCCTACAATGTCATGCTGTACAGTGATGCTCCAGTCAGTGAGCTCTCTCTGGAGCTGCTGCTACTTCAGGTGGTTCTGCCTGCGCTGCTGGAACAAGGTCACACACGCCAGTGGCTCAAAGGCCTGGTCAGAGCCTGGACCGTCACCGCTGGATATCTGCTAGACCTCCACTCGTACCTGTTGGGTGACCAGGAGGAGAATGACGATGATGCGGACCAGCAGGACAACAACAATCTGCAGGGGAGGAATAACAACGCCATCCCTGATGGGCTGCACGCTGCCCACCAGGCTATCCTACAGCAGGGAGGTCCTGTCGGCTTCCAGCCCTACCACCAACCCATTAAATTCAGCTTCAGGATTGTGCTGCTggttgtgttcatgtgtgtgacACTGCTGGTGGCCAGTCTGGTGTGCCTCACGTTGCCAGTATTCGCCGGCCGGtacctgatgtctctctggacgGGCAGCGCAAAGATCCACGAGCTGTACACGGCAGCGTGCGGCCTATACGTGTGCTGGCTGTCCATCAGGGCCATCACCGTTCTGCTGGCCTGGATGCCCCAGGGCAGGAGGGTCATTCTGCTCAAGGTCCAGGAGTGGACCCTCATGGTAATGCTCTGCAACACGATCCTGAAGACGGTGGTTGTTGCTGTGCTGCTGGTTGGAGCCATCCCTCTGCTGCTGGGCCTGCTATTTGAGCTGGTCATAGTAGCTCCTCTCAGGGTGCCATTGGACCAGACACCACTCTTCTACCCCTGGCAGGACTGGGCTCTCGGAGTGCTCCATGCCAAAATTATTGCTGCCATTACTCTGATGGGTCCCCAGTGGTGGCTGAAAGCCGTGATCGAACAGGTGTACGCTAATGGAATTCGCAACATTGATCTCCATTTCATCATCCGTAAGCTGGCTGCTCCGGTTATCTGTGTGCTactggtgtctctctgtgtgcccTATGTCATCTCTGCTGGCATCGTCCCCATCGTAGCTCAATATTCCCCAGGAGTTACCATGGAGATGCAGAATTTGGTGCAGAGGAGAATCTACCCGTTACTGGTCATGGTAGTCATGCTGGTGGGAATCCTCTCCTTCCAGATCCGTCAATTTAAGCGCCTTTATGAGCACATTAAGAATGACAAgtaccTGGTGGGACAGAGACTGGTGAACTATGAACGCAAGGCGGCAGGCAGAAGCACCACAGCCACACACAGCAGCTCTTCCCAAGAGTAGGAGCCGTTATCACCTGACCTGAGAAAACAGACTCTAGCTGTGAGACCTCTCTTCACATTCATGACTCAAGCACTCGCCTCTCGCAATGTCTTCTTTCACTCCCTGCTTACAAGCGTAGCCGGAGAACTGAGAAGTTTGTTTTACAAAAAAGATTAAAAGGCAAAATGACCCTGATAACCAACCAACTTGGATTTGAAAAAATTGTTTAATCTTTGTACATCTTGAAAGAAAAAAATTGTATTTTGTGAATTAATTTATTGAAGACTTTGTGTGAGTTCCTGTCGTTAGGTCTGGATGGACTGCTACAGTACCTAACCTGTTTGAATAGGAGGAGGCAGAGTCCCGGGAAGCCTCTTTTCAGCTCTGCTCTATGGGATAATCCCATTGGAACACATGATGGATGCTCTGCTTTAGAGGGAGCAATGTGAGACAAGGCTGAAGAACTTTGGGATCAGTTTTTGTAGGTTGTATTTATTAGTTTCGATTTCCCTTTTTAGGGGTTTAGTATTACAGTGTGTGGGTGAGAGGTATTACAGTGTGTGGGTGAGAGGTATTACAGTGTGTGGGTGAGAGGTTATTTGCAAGAAAAAAAAGTTCCTATTGGAATGGGTGATTTAGTCTTTCTGTAGCAGGGCTTAAAGCAAGGGACTTTTTAATTCAGATTTATAGATTTCGGTTCACTGACCGGCCACAAAGGAGCTAATGAGTGTGTCAGGCTTCCCTGAATAGCAATATACTGACTTGATGGTCTCCTGTCTCAGGCTGGGGTTATTAATTAACCTAGCTAGACATATGATGTAGCTTTAGTGTTTAGTTTCATTTGAGAGAACCCTAAAAGGCAGAGTATCTGCTGAGTTTGGCATTAGGAATTTACAACATTGTAACTGCTCATGAAATTTGGATAATTTCTACTCTACATTTCTTGCTACACCTGTTATTACTTATGCACGAATATCAGTCTATTGCACTTTTAAAAAAGCTTTAGCATAGTGGCAATCATTCATAAACCATTTTAGTTAAATCAAGTCAGTATTTCAATCTGGGGGTGAGGACactaaaattaaattaaatatgaGTTTTCGATCTAGTTTGACACTTTTAGGGGCTGTGTGTTGAGATGTTTGTAAATAaagcttcttttttttccatttcactGTGTACCATTGTCTTATCGGTTCAAGGTTTAAGACTTGATTTCCAATTTACAGAGAGTGTATTAAATCCTAAGATTCTATAAGTGACCTTCTAGTAACTTAATATACAAAACTGGATGCTGGTGTTTACCTGTTGAGTTTATGCTGACTCATTTTAAGCAAATGTTCTATTTTTATAAGTGCATATAGAGGCAGTTTCAAGTTGTGTAAATCTTGTGTTGCTGTTTTATACGCTTCatgttgtttttctgtgtgttCCTGAGTGGTCAAGTGTGTATTGGTCATCTTAATAAATGGCTACTTGAAAAACCCCATAGAGGTGAATAATAGCATAAAA
>XM_021589400.2
GGATAAGTTGGAGGGCAAACTGCAGACAGAACTACAGAGCACAGCTAAAGTGGTGGCCTGCCGTttcccttttcccacctgggcaCCTGATGGCACTGCTGGAGAAGGAATAGACACTGTTTCGCTGGCTGCTAGGCTTTTCACCAACAAGCCAGGCGGTGTTGTGTGTTGACTGAAAAGAGGACAGTGTGCGTCAGCATTCAAGATGGACACCGCCGAGGAAGGGGATATATGCCGGGTCTGCCGGTCTGAAGGAACCCAGGACAAGCCACTATATCACCCCTGTGTTTGCACAGGAAGTATAAAATTCATCCATCAAGAATGCTTGGTACAATGGCTAAAACACAGCAGAAAAGAATACTGTGAGTTATGCAAACACAGATTTGCTTTTACGCCAATCTATTCTCCAGACATGCCTTCCCGACTGCCTGTTCAGGACATATTTGCGGGGCTGGTGACAAGTGTAGGCACAGCTATTAGATACTGGTTTCACTACACACTAGTTGCCTTTGCTTGGCTGGGAGTCGTTCCTCTCACAGCATGTCGCATCTACAAGTGTCTGTTTACCGGCTCTGTGAGCTCACTCCTTACCCTGCCATTAGATATGCTTTCTACAGAGAACTTGATGGCGGACTGCTTGCAGGGTTGTTTTGTGGTGACGTGTACACTCTGCGCCTTCATCAGTCTGGTGTGGCTGCGGGAGCAGATTGTTCATGGTGGCGCCCCCCAgtggctggagcagaatcagcAGCAGCAGCCACAACATGCACCAGCTCCACAACTTAATGAGCAGGGTCCTGGGCAGGGGGTGGGTGAGAACCagcctgctcctgctgctgctgcgcCCCTGGCGGACAATGGTCCAGCGGCTGAGGTCCCTGACATCCAGGTGGACCCGGTAGAGGACATGGAGCTGGAGGacgaggctggggctgaggatgTAGGGGACGCCAACAATGGTGCACAAGATGACATGAATTGGAATGCCCTGGAATGGGACCGGGCAGCAGAGGAGCTAACATGGGAGAGGATGCTCGGTCTTGATGGCTCCTTGGTTTTCCTGGAGCATGTCTTCTGGGTGGTCTCACTAAACACACTCTTCATTTTGGTGTTCGCTTTTTGTCCGTATCATATTGGACATTTCTCAGTTGTGGGTCTTGGCTTTGAAAATAATGTGCAGGCCTCCCACTTCGAAGGCCTCATCACCACCATCGTAGGCTACATCTTCCTGGCCATGACATTAATACTGTGCCATGGATTGGCAGCGTTGGTGAGATTCCAAAGATCCAGACACCTTTTAGGAGTGTGCTACATTGTTGTCAAGGTATCCCTGCTGGTAGTTGTGGAGATCGGTGTGTTCCCTGTCATCTGTGGCTGGTGGCTCGACATCTGCTCACTGGAGATGTTTGATGCCTCTCTGAAGGACAGAGAGCTGAGTTTTGAGTCTGCTCCCGGCACCACCATGTTCCTCCACTGGCTTGTAGGGATGGTCTACGTCTTCTACTTTGCCTCGTTCATCCTCTTACTGCGAGAGGTGCTGAGACCTGGTGTTTTATGGTTTCTCAGAAACCTGAACGATCCTGATTTTAATCCTGTCCAAGAAATGATTCACCTGCCAATATACAGACATCTCAGAAGATTAATTTTATCAGTGGTGGTGTTTGGCTCCATAGTTTTACTAATGTTGTGGCTTCCCATAAGGACGATCAAATTCATCCTCCCAGCCTTCCTCCCCTACAATGTCATGCTGTACAGTGATGCTCCAGTCAGTGAGCTCTCTCTGGAGCTGCTGCTACTTCAGGTGGTTCTGCCTGCGCTGCTGGAACAAGGTCACACACGCCAGTGGCTCAAAGGCCTGGTCAGAGCCTGGACCGTCACCGCTGGATATCTGCTAGACCTCCACTCGTACCTGTTGGGTGACCAGGAGGAGAATGACGATGATGCGGACCAGCAGGACAACAACAATCTGCAGGGGAGGAATAACAACGCCATCCCTGATGGGCTGCACGCTGCCCACCAGGCTATCCTACAGCAGGGAGGTCCTGTCGGCTTCCAGCCCTACCACCAACCCATTAAATTCAGCTTCAGGATTGTGCTGCTggttgtgttcatgtgtgtgacACTGCTGGTGGCCAGTCTGGTGTGCCTCACGTTGCCAGTATTCGCCGGCCGGtacctgatgtctctctggacgGGCAGCGCAAAGATCCACGAGCTGTACACGGCAGCGTGCGGCCTATACGTGTGCTGGCTGTCCATCAGGGCCATCACCGTTCTGCTGGCCTGGATGCCCCAGGGCAGGAGGGTCATTCTGCTCAAGGTCCAGGAGTGGACCCTCATGATCCTGAAGACGGTGGTTGTTGCTGTGCTGCTGGTTGGAGCCATCCCTCTGCTGCTGGGCCTGCTATTTGAGCTGGTCATAGTAGCTCCTCTCAGGGTGCCATTGGACCAGACACCACTCTTCTACCCCTGGCAGGACTGGGCTCTCGGAGTGCTCCATGCCAAAATTATTGCTGCCATTACTCTGATGGGTCCCCAGTGGTGGCTGAAAGCCGTGATCGAACAGGTGTACGCTAATGGAATTCGCAACATTGATCTCCATTTCATCATCCGTAAGCTGGCTGCTCCGGTTATCTGTGTGCTactggtgtctctctgtgtgcccTATGTCATCTCTGCTGGCATCGTCCCCATCGTAGCTCAATATTCCCCAGGAGTTACCATGGAGATGCAGAATTTGGTGCAGAGGAGAATCTACCCGTTACTGGTCATGGTAGTCATGCTGGTGGGAATCCTCTCCTTCCAGATCCGTCAATTTAAGCGCCTTTATGAGCACATTAAGAATGACAAgtaccTGGTGGGACAGAGACTGGTGAACTATGAACGCAAGGCGGCAGGCAGAAGCACCACAGCCACACACAGCAGCTCTTCCCAAGAGTAGGAGCCGTTATCACCTGACCTGAGAAAACAGACTCTAGCTGTGAGACCTCTCTTCACATTCATGACTCAAGCACTCGCCTCTCGCAATGTCTTCTTTCACTCCCTGCTTACAAGCGTAGCCGGAGAACTGAGAAGTTTGTTTTACAAAAAAGATTAAAAGGCAAAATGACCCTGATAACCAACCAACTTGGATTTGAAAAAATTGTTTAATCTTTGTACATCTTGAAAGAAAAAAATTGTATTTTGTGAATTAATTTATTGAAGACTTTGTGTGAGTTCCTGTCGTTAGGTCTGGATGGACTGCTACAGTACCTAACCTGTTTGAATAGGAGGAGGCAGAGTCCCGGGAAGCCTCTTTTCAGCTCTGCTCTATGGGATAATCCCATTGGAACACATGATGGATGCTCTGCTTTAGAGGGAGCAATGTGAGACAAGGCTGAAGAACTTTGGGATCAGTTTTTGTAGGTTGTATTTATTAGTTTCGATTTCCCTTTTTAGGGGTTTAGTATTACAGTGTGTGGGTGAGAGGTATTACAGTGTGTGGGTGAGAGGTATTACAGTGTGTGGGTGAGAGGTTATTTGCAAGAAAAAAAAGTTCCTATTGGAATGGGTGATTTAGTCTTTCTGTAGCAGGGCTTAAAGCAAGGGACTTTTTAATTCAGATTTATAGATTTCGGTTCACTGACCGGCCACAAAGGAGCTAATGAGTGTGTCAGGCTTCCCTGAATAGCAATATACTGACTTGATGGTCTCCTGTCTCAGGCTGGGGTTATTAATTAACCTAGCTAGACATATGATGTAGCTTTAGTGTTTAGTTTCATTTGAGAGAACCCTAAAAGGCAGAGTATCTGCTGAGTTTGGCATTAGGAATTTACAACATTGTAACTGCTCATGAAATTTGGATAATTTCTACTCTACATTTCTTGCTACACCTGTTATTACTTATGCACGAATATCAGTCTATTGCACTTTTAAAAAAGCTTTAGCATAGTGGCAATCATTCATAAACCATTTTAGTTAAATCAAGTCAGTATTTCAATCTGGGGGTGAGGACactaaaattaaattaaatatgaGTTTTCGATCTAGTTTGACACTTTTAGGGGCTGTGTGTTGAGATGTTTGTAAATAaagcttcttttttttccatttcactGTGTACCATTGTCTTATCGGTTCAAGGTTTAAGACTTGATTTCCAATTTACAGAGAGTGTATTAAATCCTAAGATTCTATAAGTGACCTTCTAGTAACTTAATATACAAAACTGGATGCTGGTGTTTACCTGTTGAGTTTATGCTGACTCATTTTAAGCAAATGTTCTATTTTTATAAGTGCATATAGAGGCAGTTTCAAGTTGTGTAAATCTTGTGTTGCTGTTTTATACGCTTCatgttgtttttctgtgtgttCCTGAGTGGTCAAGTGTGTATTGGTCATCTTAATAAATGGCTACTTGAAAAACCCCATAGAGGTGAATAATAGCATAAAA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH6-like isoform X2

GO: NA

KEGG:

id description
K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589399.2 False 4483 mRNA 0.47 26 19347306 19359361
XM_021589400.2 True 4432 mRNA 0.48 27 19347306 19359854

Neighbor

gene id symbol gene type direction distance location
LOC110508682 LOC106599592 coding downstream 5455 19333067 ~ 19341851 (-)
pkia NA coding downstream 91373 19209199 ~ 19255933 (-)
sc61g NA coding downstream 150262 19193808 ~ 19197058 (-)
LOC110508678 LOC105024244 coding downstream 161980 19116082 ~ 19185326 (-)
LOC110508677 LOC106599302 coding downstream 252241 19081538 ~ 19095065 (-)
LOC110508684 LOC106599312 coding upstream 1206 19361060 ~ 19367850 (-)
socs6 socs6 coding upstream 31510 19391364 ~ 19394722 (-)
crispld1b LOC106599318 coding upstream 55850 19415704 ~ 19426343 (-)
tmem70 LOC106599322 coding upstream 109981 19469835 ~ 19472417 (-)
LOC110508691 LOC106599325 coding upstream 125096 19484950 ~ 19488548 (-)
G2113954 NA non-coding downstream 20586 19326072 ~ 19326720 (-)
G2113953 LOC106599307 non-coding downstream 22571 19321641 ~ 19324735 (-)
G2113873 NA non-coding downstream 141906 19205189 ~ 19205400 (-)
G2113872 NA non-coding downstream 142198 19204844 ~ 19205108 (-)
G2113871 NA non-coding downstream 143050 19204057 ~ 19204256 (-)
G2113978 NA non-coding upstream 36859 19396713 ~ 19397180 (-)
G2113982 NA non-coding upstream 43594 19403448 ~ 19403721 (-)
G2113988 NA non-coding upstream 47267 19407121 ~ 19407379 (-)
G2114754 NA non-coding upstream 114013 19473867 ~ 19474185 (-)
G2114757 NA non-coding upstream 115977 19475831 ~ 19476031 (-)
G2113520 LOC106599295 other downstream 337641 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 380827 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 561984 18784897 ~ 18785322 (-)
G2113287 NA other downstream 605022 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1499286 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2510831 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2513362 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2583127 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3234679 22594533 ~ 22607806 (-)

Expression


Co-expression Network